data_6JXT # _model_server_result.job_id qmk5fgLDR1eWQsooH8E9rg _model_server_result.datetime_utc '2024-11-23 15:16:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jxt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6JXT # _exptl.entry_id 6JXT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.607 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-{[4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6JXT _cell.length_a 86.749 _cell.length_b 86.749 _cell.length_c 103.939 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JXT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C9 _struct_conn.ptnr2_label_comp_id YY3 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id YY3 _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.801 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H33 N7 O2' _chem_comp.formula_weight 499.607 _chem_comp.id YY3 _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-{[4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Osimertinib;AZD 9291' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 N2 YY3 sing 376 n n N2 C11 YY3 sing 377 n n N2 C12 YY3 sing 378 n n C10 C11 YY3 sing 379 n n C10 N1 YY3 sing 380 n n C28 N1 YY3 sing 381 n n N1 C2 YY3 sing 382 n n C14 O1 YY3 sing 383 n n C3 C2 YY3 doub 384 n y C3 C4 YY3 sing 385 n y C2 C1 YY3 sing 386 n y O1 C4 YY3 sing 387 n n C4 C5 YY3 doub 388 n y C1 N YY3 sing 389 n n C1 C6 YY3 doub 390 n y N C7 YY3 sing 391 n n C7 C8 YY3 sing 392 n n C7 O YY3 doub 393 n n C5 C6 YY3 sing 394 n y C5 N3 YY3 sing 395 n n C8 C9 YY3 doub 396 n n N3 C15 YY3 sing 397 n n C15 N5 YY3 doub 398 n y C15 N4 YY3 sing 399 n y C24 C25 YY3 doub 400 n y C24 C23 YY3 sing 401 n y N5 C18 YY3 sing 402 n y N4 C16 YY3 doub 403 n y C25 C26 YY3 sing 404 n y C23 C22 YY3 doub 405 n y C18 C19 YY3 sing 406 n n C18 C17 YY3 doub 407 n y C26 C19 YY3 sing 408 n y C26 C21 YY3 doub 409 n y C16 C17 YY3 sing 410 n y C19 C20 YY3 doub 411 n y C22 C21 YY3 sing 412 n y C21 N6 YY3 sing 413 n y C20 N6 YY3 sing 414 n y N6 C27 YY3 sing 415 n n C13 H1 YY3 sing 416 n n C13 H2 YY3 sing 417 n n C13 H3 YY3 sing 418 n n C12 H5 YY3 sing 419 n n C12 H6 YY3 sing 420 n n C12 H7 YY3 sing 421 n n C11 H8 YY3 sing 422 n n C11 H9 YY3 sing 423 n n C10 H10 YY3 sing 424 n n C10 H11 YY3 sing 425 n n C28 H12 YY3 sing 426 n n C28 H13 YY3 sing 427 n n C28 H14 YY3 sing 428 n n C3 H15 YY3 sing 429 n n C14 H16 YY3 sing 430 n n C14 H17 YY3 sing 431 n n C14 H18 YY3 sing 432 n n N H19 YY3 sing 433 n n C8 H20 YY3 sing 434 n n C9 H22 YY3 sing 435 n n C9 H23 YY3 sing 436 n n C6 H25 YY3 sing 437 n n N3 H26 YY3 sing 438 n n C16 H27 YY3 sing 439 n n C17 H28 YY3 sing 440 n n C25 H29 YY3 sing 441 n n C24 H30 YY3 sing 442 n n C23 H31 YY3 sing 443 n n C22 H32 YY3 sing 444 n n C27 H33 YY3 sing 445 n n C27 H34 YY3 sing 446 n n C27 H35 YY3 sing 447 n n C20 H36 YY3 sing 448 n n # _atom_sites.entry_id 6JXT _atom_sites.fract_transf_matrix[1][1] 0.011528 _atom_sites.fract_transf_matrix[1][2] 0.006655 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013311 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YY3 A 1 1101 797 YY3 OVB . C 3 CL A 1 1102 1 CL CL . D 4 HOH A 1 1201 36 HOH HOH . D 4 HOH A 2 1202 46 HOH HOH . D 4 HOH A 3 1203 33 HOH HOH . D 4 HOH A 4 1204 31 HOH HOH . D 4 HOH A 5 1205 23 HOH HOH . D 4 HOH A 6 1206 14 HOH HOH . D 4 HOH A 7 1207 22 HOH HOH . D 4 HOH A 8 1208 19 HOH HOH . D 4 HOH A 9 1209 10 HOH HOH . D 4 HOH A 10 1210 3 HOH HOH . D 4 HOH A 11 1211 48 HOH HOH . D 4 HOH A 12 1212 20 HOH HOH . D 4 HOH A 13 1213 2 HOH HOH . D 4 HOH A 14 1214 9 HOH HOH . D 4 HOH A 15 1215 38 HOH HOH . D 4 HOH A 16 1216 7 HOH HOH . D 4 HOH A 17 1217 40 HOH HOH . D 4 HOH A 18 1218 45 HOH HOH . D 4 HOH A 19 1219 24 HOH HOH . D 4 HOH A 20 1220 43 HOH HOH . D 4 HOH A 21 1221 32 HOH HOH . D 4 HOH A 22 1222 44 HOH HOH . D 4 HOH A 23 1223 13 HOH HOH . D 4 HOH A 24 1224 4 HOH HOH . D 4 HOH A 25 1225 50 HOH HOH . D 4 HOH A 26 1226 41 HOH HOH . D 4 HOH A 27 1227 17 HOH HOH . D 4 HOH A 28 1228 25 HOH HOH . D 4 HOH A 29 1229 28 HOH HOH . D 4 HOH A 30 1230 34 HOH HOH . D 4 HOH A 31 1231 37 HOH HOH . D 4 HOH A 32 1232 47 HOH HOH . D 4 HOH A 33 1233 29 HOH HOH . D 4 HOH A 34 1234 16 HOH HOH . D 4 HOH A 35 1235 30 HOH HOH . D 4 HOH A 36 1236 8 HOH HOH . D 4 HOH A 37 1237 39 HOH HOH . D 4 HOH A 38 1238 35 HOH HOH . D 4 HOH A 39 1239 1 HOH HOH . D 4 HOH A 40 1240 5 HOH HOH . D 4 HOH A 41 1241 21 HOH HOH . D 4 HOH A 42 1242 49 HOH HOH . D 4 HOH A 43 1243 11 HOH HOH . D 4 HOH A 44 1244 6 HOH HOH . D 4 HOH A 45 1245 15 HOH HOH . D 4 HOH A 46 1246 12 HOH HOH . D 4 HOH A 47 1247 42 HOH HOH . D 4 HOH A 48 1248 26 HOH HOH . D 4 HOH A 49 1249 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 YY3 . . . B 2 -22.123 52.465 4.733 1 57.86 ? C13 YY3 1101 A 1 HETATM 2 N N2 YY3 . . . B 2 -21.086 53.235 5.385 1 77.27 ? N2 YY3 1101 A 1 HETATM 3 C C12 YY3 . . . B 2 -20.006 53.469 4.443 1 60.03 ? C12 YY3 1101 A 1 HETATM 4 C C11 YY3 . . . B 2 -20.572 52.455 6.487 1 58.3 ? C11 YY3 1101 A 1 HETATM 5 C C10 YY3 . . . B 2 -20.704 53.242 7.778 1 56.91 ? C10 YY3 1101 A 1 HETATM 6 N N1 YY3 . . . B 2 -19.681 54.258 7.841 1 57.12 ? N1 YY3 1101 A 1 HETATM 7 C C28 YY3 . . . B 2 -19.879 55.52 7.17 1 51.16 ? C28 YY3 1101 A 1 HETATM 8 C C3 YY3 . . . B 2 -18.57 53.693 9.922 1 51.23 ? C3 YY3 1101 A 1 HETATM 9 C C4 YY3 . . . B 2 -17.424 53.549 10.658 1 42.42 ? C4 YY3 1101 A 1 HETATM 10 O O1 YY3 . . . B 2 -17.5 53.156 11.977 1 53.73 ? O1 YY3 1101 A 1 HETATM 11 C C14 YY3 . . . B 2 -18.743 53.343 12.557 1 45.61 ? C14 YY3 1101 A 1 HETATM 12 C C2 YY3 . . . B 2 -18.468 54.078 8.608 1 54.17 ? C2 YY3 1101 A 1 HETATM 13 C C1 YY3 . . . B 2 -17.237 54.345 8.046 1 45.08 ? C1 YY3 1101 A 1 HETATM 14 N N YY3 . . . B 2 -17.237 54.732 6.652 1 43.89 ? N YY3 1101 A 1 HETATM 15 C C7 YY3 . . . B 2 -16.074 55.086 5.877 1 50.38 ? C7 YY3 1101 A 1 HETATM 16 O O YY3 . . . B 2 -15.01 55.101 6.36 1 44.47 ? O YY3 1101 A 1 HETATM 17 C C8 YY3 . . . B 2 -16.291 55.421 4.403 1 39.53 ? C8 YY3 1101 A 1 HETATM 18 C C9 YY3 . . . B 2 -15.691 56.728 3.908 1 42.29 ? C9 YY3 1101 A 1 HETATM 19 C C6 YY3 . . . B 2 -16.075 54.188 8.789 1 43.99 ? C6 YY3 1101 A 1 HETATM 20 C C5 YY3 . . . B 2 -16.191 53.788 10.109 1 48.57 ? C5 YY3 1101 A 1 HETATM 21 N N3 YY3 . . . B 2 -15.076 53.608 11.021 1 43.44 ? N3 YY3 1101 A 1 HETATM 22 C C15 YY3 . . . B 2 -13.696 53.426 10.663 1 45.29 ? C15 YY3 1101 A 1 HETATM 23 N N5 YY3 . . . B 2 -13.372 53.151 9.432 1 40.15 ? N5 YY3 1101 A 1 HETATM 24 N N4 YY3 . . . B 2 -12.811 53.532 11.617 1 51.28 ? N4 YY3 1101 A 1 HETATM 25 C C16 YY3 . . . B 2 -11.529 53.373 11.389 1 47.93 ? C16 YY3 1101 A 1 HETATM 26 C C17 YY3 . . . B 2 -11.14 53.086 10.099 1 40.91 ? C17 YY3 1101 A 1 HETATM 27 C C18 YY3 . . . B 2 -12.115 52.973 9.133 1 42 ? C18 YY3 1101 A 1 HETATM 28 C C19 YY3 . . . B 2 -11.727 52.662 7.693 1 37.25 ? C19 YY3 1101 A 1 HETATM 29 C C26 YY3 . . . B 2 -12.601 52.319 6.64 1 42.66 ? C26 YY3 1101 A 1 HETATM 30 C C25 YY3 . . . B 2 -13.992 52.136 6.538 1 43 ? C25 YY3 1101 A 1 HETATM 31 C C24 YY3 . . . B 2 -14.555 51.788 5.327 1 43.29 ? C24 YY3 1101 A 1 HETATM 32 C C23 YY3 . . . B 2 -13.74 51.618 4.221 1 44.44 ? C23 YY3 1101 A 1 HETATM 33 C C22 YY3 . . . B 2 -12.377 51.793 4.32 1 40.57 ? C22 YY3 1101 A 1 HETATM 34 C C21 YY3 . . . B 2 -11.804 52.148 5.558 1 46.31 ? C21 YY3 1101 A 1 HETATM 35 N N6 YY3 . . . B 2 -10.526 52.379 5.905 1 46.2 ? N6 YY3 1101 A 1 HETATM 36 C C27 YY3 . . . B 2 -9.393 52.299 5.018 1 49.85 ? C27 YY3 1101 A 1 HETATM 37 C C20 YY3 . . . B 2 -10.455 52.684 7.171 1 40.51 ? C20 YY3 1101 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 37 #