data_6JZH # _model_server_result.job_id FLYH66sW02jAMP3vrlgzFw _model_server_result.datetime_utc '2024-11-08 13:42:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 6JZH # _exptl.entry_id 6JZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JZH _cell.length_a 40.17 _cell.length_b 179.59 _cell.length_c 142.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 B NA NA . A NA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A OG SER 116 A SER 91 1_555 B NA NA . A NA 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc3 B NA NA . A NA 2001 1_555 Z O HOH . A HOH 2118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc4 B NA NA . A NA 2001 1_555 Z O HOH . A HOH 2138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc5 B NA NA . A NA 2001 1_555 Z O HOH . A HOH 2150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JZH _atom_sites.fract_transf_matrix[1][1] 0.024894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 2001 2001 NA NA . C 3 ZMA A 1 2002 2002 ZMA ZMA . D 4 OLA A 1 2003 2008 OLA OLA . E 4 OLA A 1 2004 2009 OLA OLA . F 4 OLA A 1 2005 2010 OLA OLA . G 4 OLA A 1 2006 2011 OLA OLA . H 4 OLA A 1 2007 2012 OLA OLA . I 4 OLA A 1 2008 2013 OLA OLA . J 4 OLA A 1 2009 2014 OLA OLA . K 4 OLA A 1 2010 2015 OLA OLA . L 4 OLA A 1 2011 2016 OLA OLA . M 4 OLA A 1 2012 2018 OLA OLA . N 4 OLA A 1 2013 2019 OLA OLA . O 4 OLA A 1 2014 2020 OLA OLA . P 4 OLA A 1 2015 2023 OLA OLA . Q 4 OLA A 1 2016 2024 OLA OLA . R 4 OLA A 1 2017 2025 OLA OLA . S 4 OLA A 1 2018 2026 OLA OLA . T 4 OLA A 1 2019 2027 OLA OLA . U 4 OLA A 1 2020 2028 OLA OLA . V 4 OLA A 1 2021 2029 OLA OLA . W 5 CLR A 1 2022 2030 CLR CLR . X 5 CLR A 1 2023 2031 CLR CLR . Y 5 CLR A 1 2024 2032 CLR CLR . Z 6 HOH A 1 2101 3054 HOH HOH . Z 6 HOH A 2 2102 3029 HOH HOH . Z 6 HOH A 3 2103 3037 HOH HOH . Z 6 HOH A 4 2104 3019 HOH HOH . Z 6 HOH A 5 2105 3002 HOH HOH . Z 6 HOH A 6 2106 3025 HOH HOH . Z 6 HOH A 7 2107 3028 HOH HOH . Z 6 HOH A 8 2108 3001 HOH HOH . Z 6 HOH A 9 2109 3023 HOH HOH . Z 6 HOH A 10 2110 3008 HOH HOH . Z 6 HOH A 11 2111 3013 HOH HOH . Z 6 HOH A 12 2112 3017 HOH HOH . Z 6 HOH A 13 2113 3044 HOH HOH . Z 6 HOH A 14 2114 3021 HOH HOH . Z 6 HOH A 15 2115 3033 HOH HOH . Z 6 HOH A 16 2116 3007 HOH HOH . Z 6 HOH A 17 2117 3034 HOH HOH . Z 6 HOH A 18 2118 3004 HOH HOH . Z 6 HOH A 19 2119 3016 HOH HOH . Z 6 HOH A 20 2120 3009 HOH HOH . Z 6 HOH A 21 2121 3003 HOH HOH . Z 6 HOH A 22 2122 3051 HOH HOH . Z 6 HOH A 23 2123 3036 HOH HOH . Z 6 HOH A 24 2124 3042 HOH HOH . Z 6 HOH A 25 2125 3040 HOH HOH . Z 6 HOH A 26 2126 3045 HOH HOH . Z 6 HOH A 27 2127 3006 HOH HOH . Z 6 HOH A 28 2128 3010 HOH HOH . Z 6 HOH A 29 2129 3018 HOH HOH . Z 6 HOH A 30 2130 3065 HOH HOH . Z 6 HOH A 31 2131 3039 HOH HOH . Z 6 HOH A 32 2132 3011 HOH HOH . Z 6 HOH A 33 2133 3020 HOH HOH . Z 6 HOH A 34 2134 3026 HOH HOH . Z 6 HOH A 35 2135 3012 HOH HOH . Z 6 HOH A 36 2136 3031 HOH HOH . Z 6 HOH A 37 2137 3056 HOH HOH . Z 6 HOH A 38 2138 3048 HOH HOH . Z 6 HOH A 39 2139 3024 HOH HOH . Z 6 HOH A 40 2140 3063 HOH HOH . Z 6 HOH A 41 2141 3030 HOH HOH . Z 6 HOH A 42 2142 3027 HOH HOH . Z 6 HOH A 43 2143 3053 HOH HOH . Z 6 HOH A 44 2144 3005 HOH HOH . Z 6 HOH A 45 2145 3035 HOH HOH . Z 6 HOH A 46 2146 3059 HOH HOH . Z 6 HOH A 47 2147 3015 HOH HOH . Z 6 HOH A 48 2148 3014 HOH HOH . Z 6 HOH A 49 2149 3052 HOH HOH . Z 6 HOH A 50 2150 3047 HOH HOH . Z 6 HOH A 51 2151 3049 HOH HOH . Z 6 HOH A 52 2152 3061 HOH HOH . Z 6 HOH A 53 2153 3046 HOH HOH . Z 6 HOH A 54 2154 3057 HOH HOH . Z 6 HOH A 55 2155 3038 HOH HOH . Z 6 HOH A 56 2156 3022 HOH HOH . Z 6 HOH A 57 2157 3062 HOH HOH . Z 6 HOH A 58 2158 3058 HOH HOH . Z 6 HOH A 59 2159 3043 HOH HOH . Z 6 HOH A 60 2160 3041 HOH HOH . Z 6 HOH A 61 2161 3055 HOH HOH . Z 6 HOH A 62 2162 3032 HOH HOH . Z 6 HOH A 63 2163 3066 HOH HOH . Z 6 HOH A 64 2164 3064 HOH HOH . Z 6 HOH A 65 2165 3050 HOH HOH . Z 6 HOH A 66 2166 3060 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -23.978 _atom_site.Cartn_y -8.696 _atom_site.Cartn_z 16.729 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.6 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 2001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #