data_6JZO # _model_server_result.job_id XEOvqC30EL23BouOI7bsGg _model_server_result.datetime_utc '2024-11-15 12:05:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":801}' # _entry.id 6JZO # _exptl.entry_id 6JZO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JZO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 I N N ? 2 K N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 549 A CYS 549 1_555 A SG CYS 554 A CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? disulf ? disulf2 C SG CYS 549 C CYS 549 1_555 C SG CYS 554 C CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? covale ? covale1 A CE1 PHE 378 A PHE 378 1_555 E CAA Y01 . A Y01 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? metalc ? metalc1 A OE2 GLU 417 A GLU 417 1_555 H NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A OE1 GLN 420 A GLN 420 1_555 H NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc3 A OD1 ASN 435 A ASN 435 1_555 H NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc4 A OD2 ASP 438 A ASP 438 1_555 H NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc5 B OE2 GLU 417 B GLU 417 1_555 J NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc6 B OE1 GLN 420 B GLN 420 1_555 J NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc7 B OD2 ASP 438 B ASP 438 1_555 J NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc8 C OE2 GLU 417 C GLU 417 1_555 M NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc9 C OE1 GLN 420 C GLN 420 1_555 M NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc10 C OD2 ASP 438 C ASP 438 1_555 M NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc11 D OE2 GLU 417 D GLU 417 1_555 P NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc12 D OE1 GLN 420 D GLN 420 1_555 P NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc13 D OD2 ASP 438 D ASP 438 1_555 P NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6JZO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Y01 A 1 801 4 Y01 Y01 . F 3 LPP A 1 802 1 LPP LPP . G 3 LPP A 1 803 2 LPP LPP . H 4 NA A 1 804 1 NA NA . I 2 Y01 B 1 801 1 Y01 Y01 . J 4 NA B 1 802 2 NA NA . K 2 Y01 C 1 801 2 Y01 Y01 . L 3 LPP C 1 802 3 LPP LPP . M 4 NA C 1 803 3 NA NA . N 2 Y01 D 1 801 3 Y01 Y01 . O 3 LPP D 1 802 4 LPP LPP . P 4 NA D 1 803 4 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . I 2 171.249 184.009 182.067 1 20 ? CAA Y01 801 B 1 HETATM 2 C CBA Y01 . . . I 2 172.589 183.408 181.642 1 20 ? CBA Y01 801 B 1 HETATM 3 C CAB Y01 . . . I 2 173.674 184.485 181.713 1 20 ? CAB Y01 801 B 1 HETATM 4 C CAN Y01 . . . I 2 172.478 182.876 180.21 1 20 ? CAN Y01 801 B 1 HETATM 5 C CAJ Y01 . . . I 2 173.219 181.541 180.099 1 20 ? CAJ Y01 801 B 1 HETATM 6 C CAO Y01 . . . I 2 172.888 180.865 178.766 1 20 ? CAO Y01 801 B 1 HETATM 7 C CBB Y01 . . . I 2 173.469 181.691 177.613 1 20 ? CBB Y01 801 B 1 HETATM 8 C CAC Y01 . . . I 2 174.965 181.9 177.851 1 20 ? CAC Y01 801 B 1 HETATM 9 C CBE Y01 . . . I 2 173.27 180.974 176.269 1 20 ? CBE Y01 801 B 1 HETATM 10 C CAP Y01 . . . I 2 171.853 180.384 176.153 1 20 ? CAP Y01 801 B 1 HETATM 11 C CAQ Y01 . . . I 2 171.424 180.597 174.691 1 20 ? CAQ Y01 801 B 1 HETATM 12 C CBG Y01 . . . I 2 172.688 181.111 174.04 1 20 ? CBG Y01 801 B 1 HETATM 13 C CBI Y01 . . . I 2 173.27 181.963 175.128 1 20 ? CBI Y01 801 B 1 HETATM 14 C CAE Y01 . . . I 2 172.38 183.18 175.436 1 20 ? CAE Y01 801 B 1 HETATM 15 C CAU Y01 . . . I 2 174.644 182.421 174.698 1 20 ? CAU Y01 801 B 1 HETATM 16 C CAS Y01 . . . I 2 174.489 183.282 173.443 1 20 ? CAS Y01 801 B 1 HETATM 17 C CBF Y01 . . . I 2 173.754 182.514 172.344 1 20 ? CBF Y01 801 B 1 HETATM 18 C CBD Y01 . . . I 2 172.413 181.982 172.85 1 20 ? CBD Y01 801 B 1 HETATM 19 C CAK Y01 . . . I 2 171.718 181.175 171.736 1 20 ? CAK Y01 801 B 1 HETATM 20 C CAI Y01 . . . I 2 171.812 181.724 170.441 1 20 ? CAI Y01 801 B 1 HETATM 21 C CAZ Y01 . . . I 2 172.664 182.794 170.141 1 20 ? CAZ Y01 801 B 1 HETATM 22 C CAV Y01 . . . I 2 172.709 183.28 168.836 1 20 ? CAV Y01 801 B 1 HETATM 23 C CBH Y01 . . . I 2 173.482 183.417 171.126 1 20 ? CBH Y01 801 B 1 HETATM 24 C CAD Y01 . . . I 2 172.723 184.634 171.636 1 20 ? CAD Y01 801 B 1 HETATM 25 C CAT Y01 . . . I 2 174.851 183.92 170.595 1 20 ? CAT Y01 801 B 1 HETATM 26 C CAR Y01 . . . I 2 175.303 183.294 169.258 1 20 ? CAR Y01 801 B 1 HETATM 27 C CBC Y01 . . . I 2 174.136 183.215 168.238 1 20 ? CBC Y01 801 B 1 HETATM 28 O OAW Y01 . . . I 2 174.294 184.288 167.301 1 20 ? OAW Y01 801 B 1 HETATM 29 C CAY Y01 . . . I 2 174.595 183.892 166.031 1 20 ? CAY Y01 801 B 1 HETATM 30 O OAG Y01 . . . I 2 174.876 182.749 165.686 1 20 ? OAG Y01 801 B 1 HETATM 31 C CAM Y01 . . . I 2 174.567 185.009 165.002 1 20 ? CAM Y01 801 B 1 HETATM 32 C CAL Y01 . . . I 2 175.914 185.062 164.299 1 20 ? CAL Y01 801 B 1 HETATM 33 C CAX Y01 . . . I 2 175.883 184.116 163.108 1 20 ? CAX Y01 801 B 1 HETATM 34 O OAH Y01 . . . I 2 175.829 184.638 161.974 1 20 ? OAH Y01 801 B 1 HETATM 35 O OAF Y01 . . . I 2 175.912 182.892 163.359 1 20 ? OAF Y01 801 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #