data_6JZO # _model_server_result.job_id CymREi95n4Nx734Llqc70A _model_server_result.datetime_utc '2024-11-15 12:10:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6jzo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":803}' # _entry.id 6JZO # _exptl.entry_id 6JZO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 648.891 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6JZO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6JZO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 549 A CYS 549 1_555 A SG CYS 554 A CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? disulf ? disulf2 C SG CYS 549 C CYS 549 1_555 C SG CYS 554 C CYS 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? covale ? covale1 A CE1 PHE 378 A PHE 378 1_555 E CAA Y01 . A Y01 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.635 ? metalc ? metalc1 A OE2 GLU 417 A GLU 417 1_555 H NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 A OE1 GLN 420 A GLN 420 1_555 H NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc3 A OD1 ASN 435 A ASN 435 1_555 H NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.98 ? metalc ? metalc4 A OD2 ASP 438 A ASP 438 1_555 H NA NA . A NA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc5 B OE2 GLU 417 B GLU 417 1_555 J NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc6 B OE1 GLN 420 B GLN 420 1_555 J NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc7 B OD2 ASP 438 B ASP 438 1_555 J NA NA . B NA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc8 C OE2 GLU 417 C GLU 417 1_555 M NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc9 C OE1 GLN 420 C GLN 420 1_555 M NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc10 C OD2 ASP 438 C ASP 438 1_555 M NA NA . C NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.839 ? metalc ? metalc11 D OE2 GLU 417 D GLU 417 1_555 P NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc12 D OE1 GLN 420 D GLN 420 1_555 P NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc13 D OD2 ASP 438 D ASP 438 1_555 P NA NA . D NA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? # _chem_comp.formula 'C35 H69 O8 P' _chem_comp.formula_weight 648.891 _chem_comp.id LPP _chem_comp.mon_nstd_flag . _chem_comp.name '2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE;L-B,G-DIPALMITOYL-A-PHOSPHATIDIC ACID DISODIUM SALT;3-SN-PHOSPHATIDIC ACID;1,2-DIPALMITOYLDISODIUM SALT' # _atom_sites.entry_id 6JZO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Y01 A 1 801 4 Y01 Y01 . F 3 LPP A 1 802 1 LPP LPP . G 3 LPP A 1 803 2 LPP LPP . H 4 NA A 1 804 1 NA NA . I 2 Y01 B 1 801 1 Y01 Y01 . J 4 NA B 1 802 2 NA NA . K 2 Y01 C 1 801 2 Y01 Y01 . L 3 LPP C 1 802 3 LPP LPP . M 4 NA C 1 803 3 NA NA . N 2 Y01 D 1 801 3 Y01 Y01 . O 3 LPP D 1 802 4 LPP LPP . P 4 NA D 1 803 4 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 LPP . . . G 3 148.97 172.968 190.77 1 20 ? P1 LPP 803 A 1 HETATM 2 O O2 LPP . . . G 3 147.953 174.045 190.512 1 20 ? O2 LPP 803 A 1 HETATM 3 O O3 LPP . . . G 3 150.39 173.39 190.492 1 20 ? O3 LPP 803 A 1 HETATM 4 O O4 LPP . . . G 3 148.788 172.226 192.07 1 20 ? O4 LPP 803 A 1 HETATM 5 O O5 LPP . . . G 3 148.652 171.868 189.648 1 20 ? O5 LPP 803 A 1 HETATM 6 C C6 LPP . . . G 3 148.946 172.099 188.279 1 20 ? C6 LPP 803 A 1 HETATM 7 C C7 LPP . . . G 3 148.51 173.506 187.923 1 20 ? C7 LPP 803 A 1 HETATM 8 C C8 LPP . . . G 3 149.586 174.138 187.051 1 20 ? C8 LPP 803 A 1 HETATM 9 O O9 LPP . . . G 3 147.256 173.467 187.245 1 20 ? O9 LPP 803 A 1 HETATM 10 O O27 LPP . . . G 3 150.033 173.222 186.062 1 20 ? O27 LPP 803 A 1 HETATM 11 C C11 LPP . . . G 3 146.131 173.225 188.136 1 20 ? C11 LPP 803 A 1 HETATM 12 O O10 LPP . . . G 3 145.885 174.022 189.019 1 20 ? O10 LPP 803 A 1 HETATM 13 C C12 LPP . . . G 3 145.265 172.001 187.967 1 20 ? C12 LPP 803 A 1 HETATM 14 C C13 LPP . . . G 3 144.345 172.171 186.769 1 20 ? C13 LPP 803 A 1 HETATM 15 C C14 LPP . . . G 3 145.155 172.367 185.499 1 20 ? C14 LPP 803 A 1 HETATM 16 C C15 LPP . . . G 3 145.115 171.134 184.61 1 20 ? C15 LPP 803 A 1 HETATM 17 C C16 LPP . . . G 3 146.192 171.226 183.537 1 20 ? C16 LPP 803 A 1 HETATM 18 C C17 LPP . . . G 3 145.624 170.946 182.153 1 20 ? C17 LPP 803 A 1 HETATM 19 C C18 LPP . . . G 3 146.687 171.133 181.078 1 20 ? C18 LPP 803 A 1 HETATM 20 C C19 LPP . . . G 3 147.03 169.807 180.414 1 20 ? C19 LPP 803 A 1 HETATM 21 C C20 LPP . . . G 3 148.505 169.481 180.59 1 20 ? C20 LPP 803 A 1 HETATM 22 C C21 LPP . . . G 3 148.715 167.984 180.754 1 20 ? C21 LPP 803 A 1 HETATM 23 C C22 LPP . . . G 3 148.76 167.303 179.394 1 20 ? C22 LPP 803 A 1 HETATM 24 C C23 LPP . . . G 3 149.02 165.812 179.547 1 20 ? C23 LPP 803 A 1 HETATM 25 C C24 LPP . . . G 3 149.182 165.142 178.189 1 20 ? C24 LPP 803 A 1 HETATM 26 C C25 LPP . . . G 3 148.684 163.704 178.224 1 20 ? C25 LPP 803 A 1 HETATM 27 C C26 LPP . . . G 3 147.266 163.628 177.708 1 20 ? C26 LPP 803 A 1 HETATM 28 C C29 LPP . . . G 3 149.532 173.369 184.714 1 20 ? C29 LPP 803 A 1 HETATM 29 O O28 LPP . . . G 3 148.336 173.49 184.548 1 20 ? O28 LPP 803 A 1 HETATM 30 C C30 LPP . . . G 3 150.462 173.379 183.534 1 20 ? C30 LPP 803 A 1 HETATM 31 C C31 LPP . . . G 3 149.85 174.229 182.433 1 20 ? C31 LPP 803 A 1 HETATM 32 C C32 LPP . . . G 3 149.898 173.497 181.103 1 20 ? C32 LPP 803 A 1 HETATM 33 C C33 LPP . . . G 3 151.3 173.556 180.52 1 20 ? C33 LPP 803 A 1 HETATM 34 C C34 LPP . . . G 3 151.508 174.842 179.736 1 20 ? C34 LPP 803 A 1 HETATM 35 C C35 LPP . . . G 3 151.376 174.591 178.24 1 20 ? C35 LPP 803 A 1 HETATM 36 C C36 LPP . . . G 3 152.744 174.435 177.593 1 20 ? C36 LPP 803 A 1 HETATM 37 C C37 LPP . . . G 3 152.898 175.383 176.412 1 20 ? C37 LPP 803 A 1 HETATM 38 C C38 LPP . . . G 3 153.69 174.735 175.286 1 20 ? C38 LPP 803 A 1 HETATM 39 C C39 LPP . . . G 3 155.157 174.575 175.661 1 20 ? C39 LPP 803 A 1 HETATM 40 C C40 LPP . . . G 3 156.06 175.33 174.691 1 20 ? C40 LPP 803 A 1 HETATM 41 C C41 LPP . . . G 3 157.421 174.654 174.558 1 20 ? C41 LPP 803 A 1 HETATM 42 C C42 LPP . . . G 3 158.447 175.275 175.499 1 20 ? C42 LPP 803 A 1 HETATM 43 C C43 LPP . . . G 3 158.523 176.787 175.319 1 20 ? C43 LPP 803 A 1 HETATM 44 C C44 LPP . . . G 3 157.38 177.481 176.027 1 20 ? C44 LPP 803 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #