data_6K0F # _model_server_result.job_id PYsGTHBbthQkAwn29_sfCQ _model_server_result.datetime_utc '2024-11-05 03:42:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6K0F # _exptl.entry_id 6K0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K0F _cell.length_a 73.839 _cell.length_b 120.943 _cell.length_c 66.722 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 153 B HIS 134 1_555 B FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A OD1 ASP 155 B ASP 136 1_555 B FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 A NE2 HIS 230 B HIS 211 1_555 B FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc4 B FE FE . B FE 401 1_555 C O5 AKG . B AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc5 B FE FE . B FE 401 1_555 C O1 AKG . B AKG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 B FE FE . B FE 401 1_555 E O1 PEO . B PEO 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 6K0F _atom_sites.fract_transf_matrix[1][1] 0.013543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008268 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014988 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE B 1 401 1 FE FE . C 3 AKG B 1 402 1 AKG AKG . D 4 CQ9 B 1 403 1 CQ9 H1 . E 5 PEO B 1 404 1 PEO PEO . F 6 HOH B 1 501 31 HOH HOH . F 6 HOH B 2 502 126 HOH HOH . F 6 HOH B 3 503 289 HOH HOH . F 6 HOH B 4 504 112 HOH HOH . F 6 HOH B 5 505 109 HOH HOH . F 6 HOH B 6 506 182 HOH HOH . F 6 HOH B 7 507 143 HOH HOH . F 6 HOH B 8 508 94 HOH HOH . F 6 HOH B 9 509 15 HOH HOH . F 6 HOH B 10 510 146 HOH HOH . F 6 HOH B 11 511 162 HOH HOH . F 6 HOH B 12 512 101 HOH HOH . F 6 HOH B 13 513 203 HOH HOH . F 6 HOH B 14 514 305 HOH HOH . F 6 HOH B 15 515 229 HOH HOH . F 6 HOH B 16 516 131 HOH HOH . F 6 HOH B 17 517 150 HOH HOH . F 6 HOH B 18 518 179 HOH HOH . F 6 HOH B 19 519 11 HOH HOH . F 6 HOH B 20 520 204 HOH HOH . F 6 HOH B 21 521 170 HOH HOH . F 6 HOH B 22 522 60 HOH HOH . F 6 HOH B 23 523 4 HOH HOH . F 6 HOH B 24 524 25 HOH HOH . F 6 HOH B 25 525 28 HOH HOH . F 6 HOH B 26 526 130 HOH HOH . F 6 HOH B 27 527 117 HOH HOH . F 6 HOH B 28 528 62 HOH HOH . F 6 HOH B 29 529 198 HOH HOH . F 6 HOH B 30 530 41 HOH HOH . F 6 HOH B 31 531 274 HOH HOH . F 6 HOH B 32 532 201 HOH HOH . F 6 HOH B 33 533 125 HOH HOH . F 6 HOH B 34 534 176 HOH HOH . F 6 HOH B 35 535 128 HOH HOH . F 6 HOH B 36 536 33 HOH HOH . F 6 HOH B 37 537 214 HOH HOH . F 6 HOH B 38 538 119 HOH HOH . F 6 HOH B 39 539 91 HOH HOH . F 6 HOH B 40 540 67 HOH HOH . F 6 HOH B 41 541 72 HOH HOH . F 6 HOH B 42 542 148 HOH HOH . F 6 HOH B 43 543 56 HOH HOH . F 6 HOH B 44 544 30 HOH HOH . F 6 HOH B 45 545 315 HOH HOH . F 6 HOH B 46 546 188 HOH HOH . F 6 HOH B 47 547 3 HOH HOH . F 6 HOH B 48 548 174 HOH HOH . F 6 HOH B 49 549 6 HOH HOH . F 6 HOH B 50 550 92 HOH HOH . F 6 HOH B 51 551 66 HOH HOH . F 6 HOH B 52 552 14 HOH HOH . F 6 HOH B 53 553 276 HOH HOH . F 6 HOH B 54 554 178 HOH HOH . F 6 HOH B 55 555 184 HOH HOH . F 6 HOH B 56 556 77 HOH HOH . F 6 HOH B 57 557 75 HOH HOH . F 6 HOH B 58 558 13 HOH HOH . F 6 HOH B 59 559 290 HOH HOH . F 6 HOH B 60 560 39 HOH HOH . F 6 HOH B 61 561 116 HOH HOH . F 6 HOH B 62 562 252 HOH HOH . F 6 HOH B 63 563 97 HOH HOH . F 6 HOH B 64 564 175 HOH HOH . F 6 HOH B 65 565 307 HOH HOH . F 6 HOH B 66 566 115 HOH HOH . F 6 HOH B 67 567 16 HOH HOH . F 6 HOH B 68 568 35 HOH HOH . F 6 HOH B 69 569 46 HOH HOH . F 6 HOH B 70 570 59 HOH HOH . F 6 HOH B 71 571 134 HOH HOH . F 6 HOH B 72 572 73 HOH HOH . F 6 HOH B 73 573 26 HOH HOH . F 6 HOH B 74 574 38 HOH HOH . F 6 HOH B 75 575 139 HOH HOH . F 6 HOH B 76 576 20 HOH HOH . F 6 HOH B 77 577 168 HOH HOH . F 6 HOH B 78 578 80 HOH HOH . F 6 HOH B 79 579 185 HOH HOH . F 6 HOH B 80 580 34 HOH HOH . F 6 HOH B 81 581 187 HOH HOH . F 6 HOH B 82 582 189 HOH HOH . F 6 HOH B 83 583 19 HOH HOH . F 6 HOH B 84 584 192 HOH HOH . F 6 HOH B 85 585 190 HOH HOH . F 6 HOH B 86 586 107 HOH HOH . F 6 HOH B 87 587 2 HOH HOH . F 6 HOH B 88 588 64 HOH HOH . F 6 HOH B 89 589 55 HOH HOH . F 6 HOH B 90 590 272 HOH HOH . F 6 HOH B 91 591 191 HOH HOH . F 6 HOH B 92 592 10 HOH HOH . F 6 HOH B 93 593 44 HOH HOH . F 6 HOH B 94 594 32 HOH HOH . F 6 HOH B 95 595 70 HOH HOH . F 6 HOH B 96 596 51 HOH HOH . F 6 HOH B 97 597 95 HOH HOH . F 6 HOH B 98 598 316 HOH HOH . F 6 HOH B 99 599 85 HOH HOH . F 6 HOH B 100 600 247 HOH HOH . F 6 HOH B 101 601 294 HOH HOH . F 6 HOH B 102 602 106 HOH HOH . F 6 HOH B 103 603 235 HOH HOH . F 6 HOH B 104 604 257 HOH HOH . F 6 HOH B 105 605 18 HOH HOH . F 6 HOH B 106 606 133 HOH HOH . F 6 HOH B 107 607 213 HOH HOH . F 6 HOH B 108 608 27 HOH HOH . F 6 HOH B 109 609 108 HOH HOH . F 6 HOH B 110 610 83 HOH HOH . F 6 HOH B 111 611 96 HOH HOH . F 6 HOH B 112 612 124 HOH HOH . F 6 HOH B 113 613 23 HOH HOH . F 6 HOH B 114 614 103 HOH HOH . F 6 HOH B 115 615 256 HOH HOH . F 6 HOH B 116 616 197 HOH HOH . F 6 HOH B 117 617 212 HOH HOH . F 6 HOH B 118 618 301 HOH HOH . F 6 HOH B 119 619 24 HOH HOH . F 6 HOH B 120 620 7 HOH HOH . F 6 HOH B 121 621 279 HOH HOH . F 6 HOH B 122 622 90 HOH HOH . F 6 HOH B 123 623 54 HOH HOH . F 6 HOH B 124 624 100 HOH HOH . F 6 HOH B 125 625 1 HOH HOH . F 6 HOH B 126 626 53 HOH HOH . F 6 HOH B 127 627 270 HOH HOH . F 6 HOH B 128 628 69 HOH HOH . F 6 HOH B 129 629 87 HOH HOH . F 6 HOH B 130 630 254 HOH HOH . F 6 HOH B 131 631 99 HOH HOH . F 6 HOH B 132 632 113 HOH HOH . F 6 HOH B 133 633 49 HOH HOH . F 6 HOH B 134 634 12 HOH HOH . F 6 HOH B 135 635 86 HOH HOH . F 6 HOH B 136 636 208 HOH HOH . F 6 HOH B 137 637 48 HOH HOH . F 6 HOH B 138 638 317 HOH HOH . F 6 HOH B 139 639 248 HOH HOH . F 6 HOH B 140 640 120 HOH HOH . F 6 HOH B 141 641 40 HOH HOH . F 6 HOH B 142 642 111 HOH HOH . F 6 HOH B 143 643 98 HOH HOH . F 6 HOH B 144 644 195 HOH HOH . F 6 HOH B 145 645 58 HOH HOH . F 6 HOH B 146 646 171 HOH HOH . F 6 HOH B 147 647 265 HOH HOH . F 6 HOH B 148 648 141 HOH HOH . F 6 HOH B 149 649 199 HOH HOH . F 6 HOH B 150 650 52 HOH HOH . F 6 HOH B 151 651 17 HOH HOH . F 6 HOH B 152 652 251 HOH HOH . F 6 HOH B 153 653 93 HOH HOH . F 6 HOH B 154 654 230 HOH HOH . F 6 HOH B 155 655 318 HOH HOH . F 6 HOH B 156 656 104 HOH HOH . F 6 HOH B 157 657 129 HOH HOH . F 6 HOH B 158 658 262 HOH HOH . F 6 HOH B 159 659 121 HOH HOH . F 6 HOH B 160 660 118 HOH HOH . F 6 HOH B 161 661 244 HOH HOH . F 6 HOH B 162 662 84 HOH HOH . F 6 HOH B 163 663 237 HOH HOH . F 6 HOH B 164 664 74 HOH HOH . F 6 HOH B 165 665 206 HOH HOH . F 6 HOH B 166 666 132 HOH HOH . F 6 HOH B 167 667 43 HOH HOH . F 6 HOH B 168 668 157 HOH HOH . F 6 HOH B 169 669 239 HOH HOH . F 6 HOH B 170 670 219 HOH HOH . F 6 HOH B 171 671 81 HOH HOH . F 6 HOH B 172 672 227 HOH HOH . F 6 HOH B 173 673 232 HOH HOH . F 6 HOH B 174 674 243 HOH HOH . F 6 HOH B 175 675 155 HOH HOH . F 6 HOH B 176 676 167 HOH HOH . F 6 HOH B 177 677 231 HOH HOH . F 6 HOH B 178 678 161 HOH HOH . F 6 HOH B 179 679 154 HOH HOH . F 6 HOH B 180 680 253 HOH HOH . F 6 HOH B 181 681 151 HOH HOH . F 6 HOH B 182 682 147 HOH HOH . F 6 HOH B 183 683 314 HOH HOH . F 6 HOH B 184 684 320 HOH HOH . F 6 HOH B 185 685 142 HOH HOH . F 6 HOH B 186 686 22 HOH HOH . F 6 HOH B 187 687 281 HOH HOH . F 6 HOH B 188 688 177 HOH HOH . F 6 HOH B 189 689 282 HOH HOH . F 6 HOH B 190 690 268 HOH HOH . F 6 HOH B 191 691 228 HOH HOH . F 6 HOH B 192 692 114 HOH HOH . F 6 HOH B 193 693 218 HOH HOH . F 6 HOH B 194 694 319 HOH HOH . F 6 HOH B 195 695 159 HOH HOH . F 6 HOH B 196 696 180 HOH HOH . F 6 HOH B 197 697 50 HOH HOH . F 6 HOH B 198 698 234 HOH HOH . F 6 HOH B 199 699 169 HOH HOH . F 6 HOH B 200 700 241 HOH HOH . F 6 HOH B 201 701 110 HOH HOH . F 6 HOH B 202 702 224 HOH HOH . F 6 HOH B 203 703 47 HOH HOH . F 6 HOH B 204 704 45 HOH HOH . F 6 HOH B 205 705 287 HOH HOH . F 6 HOH B 206 706 196 HOH HOH . F 6 HOH B 207 707 264 HOH HOH . F 6 HOH B 208 708 88 HOH HOH . F 6 HOH B 209 709 127 HOH HOH . F 6 HOH B 210 710 42 HOH HOH . F 6 HOH B 211 711 57 HOH HOH . F 6 HOH B 212 712 193 HOH HOH . F 6 HOH B 213 713 166 HOH HOH . F 6 HOH B 214 714 71 HOH HOH . F 6 HOH B 215 715 238 HOH HOH . F 6 HOH B 216 716 138 HOH HOH . F 6 HOH B 217 717 173 HOH HOH . F 6 HOH B 218 718 220 HOH HOH . F 6 HOH B 219 719 240 HOH HOH . F 6 HOH B 220 720 5 HOH HOH . F 6 HOH B 221 721 135 HOH HOH . F 6 HOH B 222 722 209 HOH HOH . F 6 HOH B 223 723 140 HOH HOH . F 6 HOH B 224 724 79 HOH HOH . F 6 HOH B 225 725 273 HOH HOH . F 6 HOH B 226 726 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . C 3 -20.831 -22.184 -3.999 1 41.59 ? C1 AKG 402 B 1 HETATM 2 O O1 AKG . . . C 3 -21.843 -22.685 -4.57 1 39.02 ? O1 AKG 402 B 1 HETATM 3 O O2 AKG . . . C 3 -20.96 -21.225 -3.193 1 38.38 -1 O2 AKG 402 B 1 HETATM 4 C C2 AKG . . . C 3 -19.454 -22.761 -4.307 1 43.57 ? C2 AKG 402 B 1 HETATM 5 O O5 AKG . . . C 3 -19.389 -23.823 -4.836 1 42.07 ? O5 AKG 402 B 1 HETATM 6 C C3 AKG . . . C 3 -18.17 -22.005 -3.944 1 34.55 ? C3 AKG 402 B 1 HETATM 7 C C4 AKG . . . C 3 -16.963 -22.894 -4.259 1 26.14 ? C4 AKG 402 B 1 HETATM 8 C C5 AKG . . . C 3 -15.694 -22.349 -3.62 1 24.37 ? C5 AKG 402 B 1 HETATM 9 O O3 AKG . . . C 3 -14.581 -22.635 -4.141 1 23.42 -1 O3 AKG 402 B 1 HETATM 10 O O4 AKG . . . C 3 -15.762 -21.638 -2.577 1 24.3 ? O4 AKG 402 B 1 HETATM 11 H H31 AKG . . . C 3 -18.116 -21.188 -4.463 1 41.46 ? H31 AKG 402 B 1 HETATM 12 H H32 AKG . . . C 3 -18.176 -21.79 -2.998 1 41.46 ? H32 AKG 402 B 1 HETATM 13 H H41 AKG . . . C 3 -17.131 -23.788 -3.921 1 31.37 ? H41 AKG 402 B 1 HETATM 14 H H42 AKG . . . C 3 -16.842 -22.935 -5.22 1 31.37 ? H42 AKG 402 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #