data_6K0K # _model_server_result.job_id -2aQD_ToUKjCajJG47eCZQ _model_server_result.datetime_utc '2024-11-26 03:18:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":502}' # _entry.id 6K0K # _exptl.entry_id 6K0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K0K _cell.length_a 117.693 _cell.length_b 137.3 _cell.length_c 139.221 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,L,M 1 1 C,D,G,H,I,J,K,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E MG MG . A MG 501 1_555 L O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc2 C NH1 ARG 274 C ARG 274 1_555 G MG MG . C MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc3 D OG1 THR 386 D THR 386 1_555 J MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 6K0K _atom_sites.fract_transf_matrix[1][1] 0.008497 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 501 3 MG MG . F 3 CIT A 1 502 2 CIT CIT . G 2 MG C 1 501 1 MG MG . H 2 MG C 1 502 2 MG MG . I 3 CIT C 1 503 1 CIT CIT . J 2 MG D 1 501 4 MG MG . K 3 CIT D 1 502 5 CIT CIT . L 4 HOH A 1 601 45 HOH HOH . L 4 HOH A 2 602 150 HOH HOH . L 4 HOH A 3 603 66 HOH HOH . L 4 HOH A 4 604 91 HOH HOH . L 4 HOH A 5 605 120 HOH HOH . L 4 HOH A 6 606 132 HOH HOH . L 4 HOH A 7 607 118 HOH HOH . L 4 HOH A 8 608 85 HOH HOH . L 4 HOH A 9 609 136 HOH HOH . L 4 HOH A 10 610 190 HOH HOH . L 4 HOH A 11 611 183 HOH HOH . L 4 HOH A 12 612 144 HOH HOH . L 4 HOH A 13 613 9 HOH HOH . L 4 HOH A 14 614 11 HOH HOH . L 4 HOH A 15 615 8 HOH HOH . L 4 HOH A 16 616 160 HOH HOH . L 4 HOH A 17 617 216 HOH HOH . L 4 HOH A 18 618 5 HOH HOH . L 4 HOH A 19 619 68 HOH HOH . L 4 HOH A 20 620 73 HOH HOH . L 4 HOH A 21 621 19 HOH HOH . L 4 HOH A 22 622 58 HOH HOH . L 4 HOH A 23 623 28 HOH HOH . L 4 HOH A 24 624 131 HOH HOH . L 4 HOH A 25 625 84 HOH HOH . L 4 HOH A 26 626 38 HOH HOH . L 4 HOH A 27 627 168 HOH HOH . L 4 HOH A 28 628 67 HOH HOH . L 4 HOH A 29 629 20 HOH HOH . L 4 HOH A 30 630 2 HOH HOH . L 4 HOH A 31 631 95 HOH HOH . L 4 HOH A 32 632 48 HOH HOH . L 4 HOH A 33 633 251 HOH HOH . L 4 HOH A 34 634 202 HOH HOH . L 4 HOH A 35 635 121 HOH HOH . L 4 HOH A 36 636 42 HOH HOH . L 4 HOH A 37 637 41 HOH HOH . L 4 HOH A 38 638 71 HOH HOH . L 4 HOH A 39 639 138 HOH HOH . L 4 HOH A 40 640 238 HOH HOH . L 4 HOH A 41 641 193 HOH HOH . L 4 HOH A 42 642 15 HOH HOH . L 4 HOH A 43 643 44 HOH HOH . L 4 HOH A 44 644 7 HOH HOH . L 4 HOH A 45 645 245 HOH HOH . L 4 HOH A 46 646 16 HOH HOH . L 4 HOH A 47 647 12 HOH HOH . L 4 HOH A 48 648 236 HOH HOH . L 4 HOH A 49 649 187 HOH HOH . L 4 HOH A 50 650 152 HOH HOH . L 4 HOH A 51 651 72 HOH HOH . L 4 HOH A 52 652 52 HOH HOH . L 4 HOH A 53 653 170 HOH HOH . L 4 HOH A 54 654 119 HOH HOH . L 4 HOH A 55 655 50 HOH HOH . L 4 HOH A 56 656 3 HOH HOH . L 4 HOH A 57 657 53 HOH HOH . L 4 HOH A 58 658 13 HOH HOH . L 4 HOH A 59 659 103 HOH HOH . L 4 HOH A 60 660 146 HOH HOH . L 4 HOH A 61 661 92 HOH HOH . L 4 HOH A 62 662 161 HOH HOH . L 4 HOH A 63 663 163 HOH HOH . L 4 HOH A 64 664 159 HOH HOH . L 4 HOH A 65 665 185 HOH HOH . L 4 HOH A 66 666 227 HOH HOH . L 4 HOH A 67 667 162 HOH HOH . L 4 HOH A 68 668 74 HOH HOH . L 4 HOH A 69 669 244 HOH HOH . L 4 HOH A 70 670 201 HOH HOH . L 4 HOH A 71 671 175 HOH HOH . L 4 HOH A 72 672 97 HOH HOH . L 4 HOH A 73 673 243 HOH HOH . L 4 HOH A 74 674 61 HOH HOH . L 4 HOH A 75 675 209 HOH HOH . L 4 HOH A 76 676 171 HOH HOH . L 4 HOH A 77 677 142 HOH HOH . M 4 HOH B 1 501 188 HOH HOH . M 4 HOH B 2 502 157 HOH HOH . M 4 HOH B 3 503 241 HOH HOH . M 4 HOH B 4 504 208 HOH HOH . M 4 HOH B 5 505 234 HOH HOH . M 4 HOH B 6 506 29 HOH HOH . M 4 HOH B 7 507 129 HOH HOH . M 4 HOH B 8 508 88 HOH HOH . M 4 HOH B 9 509 37 HOH HOH . M 4 HOH B 10 510 140 HOH HOH . M 4 HOH B 11 511 189 HOH HOH . M 4 HOH B 12 512 124 HOH HOH . M 4 HOH B 13 513 184 HOH HOH . M 4 HOH B 14 514 147 HOH HOH . M 4 HOH B 15 515 46 HOH HOH . M 4 HOH B 16 516 82 HOH HOH . M 4 HOH B 17 517 130 HOH HOH . M 4 HOH B 18 518 64 HOH HOH . M 4 HOH B 19 519 128 HOH HOH . M 4 HOH B 20 520 34 HOH HOH . M 4 HOH B 21 521 108 HOH HOH . M 4 HOH B 22 522 24 HOH HOH . M 4 HOH B 23 523 76 HOH HOH . M 4 HOH B 24 524 14 HOH HOH . M 4 HOH B 25 525 137 HOH HOH . M 4 HOH B 26 526 100 HOH HOH . M 4 HOH B 27 527 43 HOH HOH . M 4 HOH B 28 528 196 HOH HOH . M 4 HOH B 29 529 59 HOH HOH . M 4 HOH B 30 530 249 HOH HOH . M 4 HOH B 31 531 125 HOH HOH . M 4 HOH B 32 532 221 HOH HOH . M 4 HOH B 33 533 4 HOH HOH . M 4 HOH B 34 534 10 HOH HOH . M 4 HOH B 35 535 109 HOH HOH . M 4 HOH B 36 536 127 HOH HOH . M 4 HOH B 37 537 250 HOH HOH . M 4 HOH B 38 538 39 HOH HOH . M 4 HOH B 39 539 199 HOH HOH . M 4 HOH B 40 540 93 HOH HOH . M 4 HOH B 41 541 211 HOH HOH . M 4 HOH B 42 542 180 HOH HOH . M 4 HOH B 43 543 89 HOH HOH . M 4 HOH B 44 544 65 HOH HOH . M 4 HOH B 45 545 232 HOH HOH . M 4 HOH B 46 546 149 HOH HOH . M 4 HOH B 47 547 25 HOH HOH . M 4 HOH B 48 548 94 HOH HOH . M 4 HOH B 49 549 99 HOH HOH . M 4 HOH B 50 550 87 HOH HOH . M 4 HOH B 51 551 153 HOH HOH . M 4 HOH B 52 552 235 HOH HOH . M 4 HOH B 53 553 55 HOH HOH . M 4 HOH B 54 554 49 HOH HOH . M 4 HOH B 55 555 75 HOH HOH . M 4 HOH B 56 556 22 HOH HOH . M 4 HOH B 57 557 172 HOH HOH . M 4 HOH B 58 558 62 HOH HOH . M 4 HOH B 59 559 242 HOH HOH . M 4 HOH B 60 560 70 HOH HOH . M 4 HOH B 61 561 186 HOH HOH . M 4 HOH B 62 562 177 HOH HOH . M 4 HOH B 63 563 35 HOH HOH . M 4 HOH B 64 564 191 HOH HOH . M 4 HOH B 65 565 56 HOH HOH . M 4 HOH B 66 566 32 HOH HOH . M 4 HOH B 67 567 54 HOH HOH . M 4 HOH B 68 568 57 HOH HOH . M 4 HOH B 69 569 90 HOH HOH . M 4 HOH B 70 570 219 HOH HOH . M 4 HOH B 71 571 230 HOH HOH . M 4 HOH B 72 572 148 HOH HOH . M 4 HOH B 73 573 213 HOH HOH . M 4 HOH B 74 574 141 HOH HOH . M 4 HOH B 75 575 156 HOH HOH . M 4 HOH B 76 576 78 HOH HOH . M 4 HOH B 77 577 69 HOH HOH . M 4 HOH B 78 578 237 HOH HOH . M 4 HOH B 79 579 27 HOH HOH . M 4 HOH B 80 580 164 HOH HOH . M 4 HOH B 81 581 207 HOH HOH . M 4 HOH B 82 582 102 HOH HOH . M 4 HOH B 83 583 154 HOH HOH . M 4 HOH B 84 584 47 HOH HOH . M 4 HOH B 85 585 226 HOH HOH . M 4 HOH B 86 586 133 HOH HOH . M 4 HOH B 87 587 192 HOH HOH . M 4 HOH B 88 588 223 HOH HOH . M 4 HOH B 89 589 60 HOH HOH . M 4 HOH B 90 590 155 HOH HOH . M 4 HOH B 91 591 36 HOH HOH . M 4 HOH B 92 592 181 HOH HOH . M 4 HOH B 93 593 205 HOH HOH . M 4 HOH B 94 594 81 HOH HOH . M 4 HOH B 95 595 79 HOH HOH . M 4 HOH B 96 596 112 HOH HOH . M 4 HOH B 97 597 134 HOH HOH . M 4 HOH B 98 598 23 HOH HOH . M 4 HOH B 99 599 31 HOH HOH . M 4 HOH B 100 600 123 HOH HOH . M 4 HOH B 101 601 135 HOH HOH . M 4 HOH B 102 602 40 HOH HOH . M 4 HOH B 103 603 26 HOH HOH . M 4 HOH B 104 604 197 HOH HOH . M 4 HOH B 105 605 113 HOH HOH . N 4 HOH C 1 601 225 HOH HOH . N 4 HOH C 2 602 233 HOH HOH . N 4 HOH C 3 603 194 HOH HOH . N 4 HOH C 4 604 165 HOH HOH . N 4 HOH C 5 605 30 HOH HOH . N 4 HOH C 6 606 114 HOH HOH . N 4 HOH C 7 607 195 HOH HOH . N 4 HOH C 8 608 86 HOH HOH . N 4 HOH C 9 609 229 HOH HOH . N 4 HOH C 10 610 200 HOH HOH . N 4 HOH C 11 611 204 HOH HOH . N 4 HOH C 12 612 1 HOH HOH . N 4 HOH C 13 613 122 HOH HOH . N 4 HOH C 14 614 18 HOH HOH . N 4 HOH C 15 615 198 HOH HOH . N 4 HOH C 16 616 107 HOH HOH . N 4 HOH C 17 617 167 HOH HOH . N 4 HOH C 18 618 247 HOH HOH . N 4 HOH C 19 619 96 HOH HOH . N 4 HOH C 20 620 240 HOH HOH . N 4 HOH C 21 621 6 HOH HOH . N 4 HOH C 22 622 248 HOH HOH . N 4 HOH C 23 623 218 HOH HOH . N 4 HOH C 24 624 80 HOH HOH . N 4 HOH C 25 625 210 HOH HOH . N 4 HOH C 26 626 63 HOH HOH . N 4 HOH C 27 627 151 HOH HOH . N 4 HOH C 28 628 166 HOH HOH . N 4 HOH C 29 629 145 HOH HOH . N 4 HOH C 30 630 77 HOH HOH . N 4 HOH C 31 631 116 HOH HOH . N 4 HOH C 32 632 246 HOH HOH . N 4 HOH C 33 633 231 HOH HOH . N 4 HOH C 34 634 224 HOH HOH . N 4 HOH C 35 635 98 HOH HOH . N 4 HOH C 36 636 104 HOH HOH . N 4 HOH C 37 637 220 HOH HOH . N 4 HOH C 38 638 252 HOH HOH . N 4 HOH C 39 639 101 HOH HOH . N 4 HOH C 40 640 174 HOH HOH . N 4 HOH C 41 641 139 HOH HOH . N 4 HOH C 42 642 203 HOH HOH . N 4 HOH C 43 643 239 HOH HOH . N 4 HOH C 44 644 106 HOH HOH . N 4 HOH C 45 645 17 HOH HOH . N 4 HOH C 46 646 173 HOH HOH . N 4 HOH C 47 647 178 HOH HOH . O 4 HOH D 1 601 111 HOH HOH . O 4 HOH D 2 602 117 HOH HOH . O 4 HOH D 3 603 222 HOH HOH . O 4 HOH D 4 604 115 HOH HOH . O 4 HOH D 5 605 51 HOH HOH . O 4 HOH D 6 606 158 HOH HOH . O 4 HOH D 7 607 126 HOH HOH . O 4 HOH D 8 608 105 HOH HOH . O 4 HOH D 9 609 110 HOH HOH . O 4 HOH D 10 610 217 HOH HOH . O 4 HOH D 11 611 83 HOH HOH . O 4 HOH D 12 612 228 HOH HOH . O 4 HOH D 13 613 21 HOH HOH . O 4 HOH D 14 614 33 HOH HOH . O 4 HOH D 15 615 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . K 3 -49.877 30.222 26.605 1 65.35 ? C1 CIT 502 D 1 HETATM 2 O O1 CIT . . . K 3 -49.766 29.306 25.746 1 57.42 ? O1 CIT 502 D 1 HETATM 3 O O2 CIT . . . K 3 -50.161 31.395 26.232 1 65.56 ? O2 CIT 502 D 1 HETATM 4 C C2 CIT . . . K 3 -49.69 29.943 28.088 1 60.46 ? C2 CIT 502 D 1 HETATM 5 C C3 CIT . . . K 3 -48.306 30.357 28.6 1 67.52 ? C3 CIT 502 D 1 HETATM 6 O O7 CIT . . . K 3 -48.453 31.608 29.32 1 64.98 ? O7 CIT 502 D 1 HETATM 7 C C4 CIT . . . K 3 -47.727 29.255 29.488 1 66.45 ? C4 CIT 502 D 1 HETATM 8 C C5 CIT . . . K 3 -47.17 29.77 30.804 1 71.17 ? C5 CIT 502 D 1 HETATM 9 O O3 CIT . . . K 3 -47.318 30.962 31.161 1 67.36 ? O3 CIT 502 D 1 HETATM 10 O O4 CIT . . . K 3 -46.541 28.991 31.563 1 70.61 ? O4 CIT 502 D 1 HETATM 11 C C6 CIT . . . K 3 -47.31 30.564 27.46 1 74.08 ? C6 CIT 502 D 1 HETATM 12 O O5 CIT . . . K 3 -47.282 31.614 26.743 1 70.51 ? O5 CIT 502 D 1 HETATM 13 O O6 CIT . . . K 3 -46.497 29.628 27.249 1 69.46 ? O6 CIT 502 D 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #