data_6K0X # _model_server_result.job_id QX1bm3X0VEoodBJx7cqLJQ _model_server_result.datetime_utc '2024-12-01 23:21:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6K0X # _exptl.entry_id 6K0X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6K0X _cell.length_a 109.607 _cell.length_b 109.607 _cell.length_c 130.368 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K0X _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 6K0X _atom_sites.fract_transf_matrix[1][1] 0.009124 _atom_sites.fract_transf_matrix[1][2] 0.005267 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SAM A 1 301 301 SAM SAM . D 4 HOH A 1 401 139 HOH HOH . D 4 HOH A 2 402 28 HOH HOH . D 4 HOH A 3 403 5 HOH HOH . D 4 HOH A 4 404 11 HOH HOH . D 4 HOH A 5 405 103 HOH HOH . D 4 HOH A 6 406 51 HOH HOH . D 4 HOH A 7 407 39 HOH HOH . D 4 HOH A 8 408 132 HOH HOH . D 4 HOH A 9 409 25 HOH HOH . D 4 HOH A 10 410 55 HOH HOH . D 4 HOH A 11 411 44 HOH HOH . D 4 HOH A 12 412 134 HOH HOH . D 4 HOH A 13 413 111 HOH HOH . D 4 HOH A 14 414 16 HOH HOH . D 4 HOH A 15 415 27 HOH HOH . D 4 HOH A 16 416 107 HOH HOH . D 4 HOH A 17 417 13 HOH HOH . D 4 HOH A 18 418 114 HOH HOH . D 4 HOH A 19 419 50 HOH HOH . D 4 HOH A 20 420 47 HOH HOH . D 4 HOH A 21 421 46 HOH HOH . D 4 HOH A 22 422 7 HOH HOH . D 4 HOH A 23 423 57 HOH HOH . D 4 HOH A 24 424 100 HOH HOH . D 4 HOH A 25 425 19 HOH HOH . D 4 HOH A 26 426 110 HOH HOH . D 4 HOH A 27 427 29 HOH HOH . D 4 HOH A 28 428 116 HOH HOH . D 4 HOH A 29 429 60 HOH HOH . D 4 HOH A 30 430 94 HOH HOH . D 4 HOH A 31 431 67 HOH HOH . D 4 HOH A 32 432 78 HOH HOH . D 4 HOH A 33 433 80 HOH HOH . D 4 HOH A 34 434 97 HOH HOH . D 4 HOH A 35 435 56 HOH HOH . D 4 HOH A 36 436 127 HOH HOH . D 4 HOH A 37 437 88 HOH HOH . D 4 HOH A 38 438 21 HOH HOH . D 4 HOH A 39 439 81 HOH HOH . D 4 HOH A 40 440 95 HOH HOH . D 4 HOH A 41 441 87 HOH HOH . D 4 HOH A 42 442 24 HOH HOH . D 4 HOH A 43 443 92 HOH HOH . D 4 HOH A 44 444 41 HOH HOH . D 4 HOH A 45 445 31 HOH HOH . D 4 HOH A 46 446 96 HOH HOH . D 4 HOH A 47 447 58 HOH HOH . D 4 HOH A 48 448 73 HOH HOH . D 4 HOH A 49 449 102 HOH HOH . D 4 HOH A 50 450 12 HOH HOH . D 4 HOH A 51 451 71 HOH HOH . D 4 HOH A 52 452 115 HOH HOH . D 4 HOH A 53 453 133 HOH HOH . D 4 HOH A 54 454 4 HOH HOH . D 4 HOH A 55 455 61 HOH HOH . D 4 HOH A 56 456 66 HOH HOH . D 4 HOH A 57 457 79 HOH HOH . D 4 HOH A 58 458 54 HOH HOH . D 4 HOH A 59 459 37 HOH HOH . D 4 HOH A 60 460 135 HOH HOH . D 4 HOH A 61 461 20 HOH HOH . D 4 HOH A 62 462 120 HOH HOH . D 4 HOH A 63 463 91 HOH HOH . D 4 HOH A 64 464 53 HOH HOH . D 4 HOH A 65 465 122 HOH HOH . E 4 HOH B 1 201 62 HOH HOH . E 4 HOH B 2 202 105 HOH HOH . E 4 HOH B 3 203 137 HOH HOH . E 4 HOH B 4 204 138 HOH HOH . E 4 HOH B 5 205 68 HOH HOH . E 4 HOH B 6 206 101 HOH HOH . E 4 HOH B 7 207 3 HOH HOH . E 4 HOH B 8 208 9 HOH HOH . E 4 HOH B 9 209 32 HOH HOH . E 4 HOH B 10 210 35 HOH HOH . E 4 HOH B 11 211 23 HOH HOH . E 4 HOH B 12 212 17 HOH HOH . E 4 HOH B 13 213 1 HOH HOH . E 4 HOH B 14 214 59 HOH HOH . E 4 HOH B 15 215 63 HOH HOH . E 4 HOH B 16 216 38 HOH HOH . E 4 HOH B 17 217 30 HOH HOH . E 4 HOH B 18 218 2 HOH HOH . E 4 HOH B 19 219 10 HOH HOH . E 4 HOH B 20 220 42 HOH HOH . E 4 HOH B 21 221 48 HOH HOH . E 4 HOH B 22 222 93 HOH HOH . E 4 HOH B 23 223 74 HOH HOH . E 4 HOH B 24 224 52 HOH HOH . E 4 HOH B 25 225 8 HOH HOH . E 4 HOH B 26 226 43 HOH HOH . E 4 HOH B 27 227 126 HOH HOH . E 4 HOH B 28 228 22 HOH HOH . E 4 HOH B 29 229 40 HOH HOH . E 4 HOH B 30 230 119 HOH HOH . E 4 HOH B 31 231 45 HOH HOH . E 4 HOH B 32 232 82 HOH HOH . E 4 HOH B 33 233 69 HOH HOH . E 4 HOH B 34 234 77 HOH HOH . E 4 HOH B 35 235 26 HOH HOH . E 4 HOH B 36 236 15 HOH HOH . E 4 HOH B 37 237 129 HOH HOH . E 4 HOH B 38 238 86 HOH HOH . E 4 HOH B 39 239 118 HOH HOH . E 4 HOH B 40 240 64 HOH HOH . E 4 HOH B 41 241 18 HOH HOH . E 4 HOH B 42 242 106 HOH HOH . E 4 HOH B 43 243 85 HOH HOH . E 4 HOH B 44 244 89 HOH HOH . E 4 HOH B 45 245 99 HOH HOH . E 4 HOH B 46 246 36 HOH HOH . E 4 HOH B 47 247 136 HOH HOH . E 4 HOH B 48 248 128 HOH HOH . E 4 HOH B 49 249 72 HOH HOH . E 4 HOH B 50 250 123 HOH HOH . E 4 HOH B 51 251 113 HOH HOH . E 4 HOH B 52 252 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 15.499 36.037 75.292 1 31.21 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . C 3 15.713 34.722 75.879 1 32.88 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . C 3 17.186 34.338 75.744 1 40.11 ? C SAM 301 A 1 HETATM 4 O O SAM . . . C 3 17.942 34.973 74.988 1 34.29 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . C 3 17.637 33.394 76.406 1 34.14 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . C 3 14.806 33.653 75.245 1 29.65 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . C 3 15.068 33.234 73.797 1 20.71 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . C 3 14.102 31.789 73.243 1 19.39 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . C 3 15.138 31.457 71.783 1 44.38 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . C 3 12.73 32.641 72.39 1 26.65 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . C 3 11.732 33.358 73.318 1 32.3 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . C 3 10.751 34.032 72.553 1 36.56 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . C 3 10.962 32.377 74.193 1 29.37 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . C 3 10.927 32.906 75.494 1 28.79 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . C 3 9.56 32.324 73.607 1 30.5 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . C 3 8.568 32.084 74.588 1 28.48 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . C 3 9.445 33.716 73.006 1 30.79 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . C 3 8.464 33.82 71.904 1 31.86 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . C 3 8.133 32.888 70.952 1 27.59 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . C 3 7.18 33.411 70.131 1 26.44 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . C 3 6.9 34.667 70.55 1 31.45 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . C 3 6.024 35.649 70.098 1 31.41 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . C 3 5.242 35.441 69.045 1 27.6 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . C 3 5.962 36.858 70.755 1 30.86 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . C 3 6.758 37.106 71.854 1 30.97 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . C 3 7.625 36.131 72.291 1 32.53 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . C 3 7.695 34.933 71.66 1 32.04 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 484 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #