data_6K13 # _model_server_result.job_id SpSJj5MjJm6bGrdhell0tA _model_server_result.datetime_utc '2024-11-25 10:36:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6K13 # _exptl.entry_id 6K13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 89.05 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'OXAMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K13 _cell.length_a 81.4 _cell.length_b 88.204 _cell.length_c 92.631 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 92.631 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C2 H3 N O3' _chem_comp.formula_weight 89.05 _chem_comp.id OXM _chem_comp.mon_nstd_flag . _chem_comp.name 'OXAMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 OXM sing 312 n n C1 O1 OXM doub 313 n n C1 C2 OXM sing 314 n n N1 HN1 OXM sing 315 n n N1 HN2 OXM sing 316 n n C2 O2 OXM doub 317 n n C2 O3 OXM sing 318 n n O3 HO3 OXM sing 319 n n # _atom_sites.entry_id 6K13 _atom_sites.fract_transf_matrix[1][1] 0.012285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011337 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010796 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 OXM A 1 401 341 OXM OXM . D 3 NAD A 1 402 342 NAD NAD . E 2 OXM B 1 401 341 OXM OXM . F 3 NAD B 1 402 342 NAD NAD . G 4 HOH A 1 501 374 HOH HOH . G 4 HOH A 2 502 417 HOH HOH . G 4 HOH A 3 503 380 HOH HOH . G 4 HOH A 4 504 396 HOH HOH . G 4 HOH A 5 505 373 HOH HOH . G 4 HOH A 6 506 427 HOH HOH . G 4 HOH A 7 507 368 HOH HOH . G 4 HOH A 8 508 400 HOH HOH . G 4 HOH A 9 509 428 HOH HOH . G 4 HOH A 10 510 372 HOH HOH . G 4 HOH A 11 511 393 HOH HOH . G 4 HOH A 12 512 412 HOH HOH . G 4 HOH A 13 513 411 HOH HOH . G 4 HOH A 14 514 401 HOH HOH . G 4 HOH A 15 515 397 HOH HOH . G 4 HOH A 16 516 422 HOH HOH . G 4 HOH A 17 517 417 HOH HOH . G 4 HOH A 18 518 436 HOH HOH . G 4 HOH A 19 519 394 HOH HOH . G 4 HOH A 20 520 414 HOH HOH . G 4 HOH A 21 521 392 HOH HOH . G 4 HOH A 22 522 409 HOH HOH . G 4 HOH A 23 523 439 HOH HOH . G 4 HOH A 24 524 425 HOH HOH . G 4 HOH A 25 525 407 HOH HOH . G 4 HOH A 26 526 419 HOH HOH . G 4 HOH A 27 527 370 HOH HOH . G 4 HOH A 28 528 388 HOH HOH . G 4 HOH A 29 529 366 HOH HOH . G 4 HOH A 30 530 398 HOH HOH . G 4 HOH A 31 531 418 HOH HOH . G 4 HOH A 32 532 403 HOH HOH . G 4 HOH A 33 533 410 HOH HOH . G 4 HOH A 34 534 421 HOH HOH . G 4 HOH A 35 535 399 HOH HOH . G 4 HOH A 36 536 423 HOH HOH . G 4 HOH A 37 537 434 HOH HOH . G 4 HOH A 38 538 385 HOH HOH . G 4 HOH A 39 539 397 HOH HOH . G 4 HOH A 40 540 432 HOH HOH . G 4 HOH A 41 541 424 HOH HOH . G 4 HOH A 42 542 375 HOH HOH . G 4 HOH A 43 543 367 HOH HOH . G 4 HOH A 44 544 402 HOH HOH . G 4 HOH A 45 545 420 HOH HOH . G 4 HOH A 46 546 413 HOH HOH . G 4 HOH A 47 547 379 HOH HOH . G 4 HOH A 48 548 365 HOH HOH . G 4 HOH A 49 549 363 HOH HOH . G 4 HOH A 50 550 371 HOH HOH . G 4 HOH A 51 551 388 HOH HOH . G 4 HOH A 52 552 429 HOH HOH . G 4 HOH A 53 553 440 HOH HOH . G 4 HOH A 54 554 408 HOH HOH . G 4 HOH A 55 555 420 HOH HOH . G 4 HOH A 56 556 433 HOH HOH . G 4 HOH A 57 557 437 HOH HOH . G 4 HOH A 58 558 438 HOH HOH . G 4 HOH A 59 559 406 HOH HOH . G 4 HOH A 60 560 393 HOH HOH . G 4 HOH A 61 561 416 HOH HOH . G 4 HOH A 62 562 435 HOH HOH . G 4 HOH A 63 563 387 HOH HOH . G 4 HOH A 64 564 416 HOH HOH . G 4 HOH A 65 565 430 HOH HOH . G 4 HOH A 66 566 426 HOH HOH . G 4 HOH A 67 567 405 HOH HOH . G 4 HOH A 68 568 386 HOH HOH . G 4 HOH A 69 569 415 HOH HOH . G 4 HOH A 70 570 441 HOH HOH . G 4 HOH A 71 571 431 HOH HOH . G 4 HOH A 72 572 369 HOH HOH . G 4 HOH A 73 573 376 HOH HOH . G 4 HOH A 74 574 389 HOH HOH . H 4 HOH B 1 501 390 HOH HOH . H 4 HOH B 2 502 419 HOH HOH . H 4 HOH B 3 503 369 HOH HOH . H 4 HOH B 4 504 424 HOH HOH . H 4 HOH B 5 505 367 HOH HOH . H 4 HOH B 6 506 400 HOH HOH . H 4 HOH B 7 507 425 HOH HOH . H 4 HOH B 8 508 405 HOH HOH . H 4 HOH B 9 509 402 HOH HOH . H 4 HOH B 10 510 398 HOH HOH . H 4 HOH B 11 511 377 HOH HOH . H 4 HOH B 12 512 382 HOH HOH . H 4 HOH B 13 513 365 HOH HOH . H 4 HOH B 14 514 370 HOH HOH . H 4 HOH B 15 515 364 HOH HOH . H 4 HOH B 16 516 391 HOH HOH . H 4 HOH B 17 517 414 HOH HOH . H 4 HOH B 18 518 377 HOH HOH . H 4 HOH B 19 519 372 HOH HOH . H 4 HOH B 20 520 375 HOH HOH . H 4 HOH B 21 521 368 HOH HOH . H 4 HOH B 22 522 407 HOH HOH . H 4 HOH B 23 523 364 HOH HOH . H 4 HOH B 24 524 383 HOH HOH . H 4 HOH B 25 525 371 HOH HOH . H 4 HOH B 26 526 410 HOH HOH . H 4 HOH B 27 527 423 HOH HOH . H 4 HOH B 28 528 366 HOH HOH . H 4 HOH B 29 529 411 HOH HOH . H 4 HOH B 30 530 404 HOH HOH . H 4 HOH B 31 531 383 HOH HOH . H 4 HOH B 32 532 390 HOH HOH . H 4 HOH B 33 533 385 HOH HOH . H 4 HOH B 34 534 401 HOH HOH . H 4 HOH B 35 535 363 HOH HOH . H 4 HOH B 36 536 381 HOH HOH . H 4 HOH B 37 537 412 HOH HOH . H 4 HOH B 38 538 374 HOH HOH . H 4 HOH B 39 539 392 HOH HOH . H 4 HOH B 40 540 380 HOH HOH . H 4 HOH B 41 541 394 HOH HOH . H 4 HOH B 42 542 396 HOH HOH . H 4 HOH B 43 543 408 HOH HOH . H 4 HOH B 44 544 387 HOH HOH . H 4 HOH B 45 545 378 HOH HOH . H 4 HOH B 46 546 415 HOH HOH . H 4 HOH B 47 547 382 HOH HOH . H 4 HOH B 48 548 403 HOH HOH . H 4 HOH B 49 549 379 HOH HOH . H 4 HOH B 50 550 422 HOH HOH . H 4 HOH B 51 551 404 HOH HOH . H 4 HOH B 52 552 386 HOH HOH . H 4 HOH B 53 553 373 HOH HOH . H 4 HOH B 54 554 395 HOH HOH . H 4 HOH B 55 555 406 HOH HOH . H 4 HOH B 56 556 362 HOH HOH . H 4 HOH B 57 557 421 HOH HOH . H 4 HOH B 58 558 362 HOH HOH . H 4 HOH B 59 559 399 HOH HOH . H 4 HOH B 60 560 389 HOH HOH . H 4 HOH B 61 561 413 HOH HOH . H 4 HOH B 62 562 395 HOH HOH . H 4 HOH B 63 563 378 HOH HOH . H 4 HOH B 64 564 409 HOH HOH . H 4 HOH B 65 565 384 HOH HOH . H 4 HOH B 66 566 391 HOH HOH . H 4 HOH B 67 567 384 HOH HOH . H 4 HOH B 68 568 376 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OXM . . . C 2 17.584 36.416 30.465 1 26.61 ? C1 OXM 401 A 1 HETATM 2 N N1 OXM . . . C 2 18.58 35.64 30.084 1 27.27 ? N1 OXM 401 A 1 HETATM 3 O O1 OXM . . . C 2 16.848 37.016 29.656 1 26.84 ? O1 OXM 401 A 1 HETATM 4 C C2 OXM . . . C 2 17.327 36.566 31.923 1 28.57 ? C2 OXM 401 A 1 HETATM 5 O O2 OXM . . . C 2 16.6 37.507 32.317 1 24.85 ? O2 OXM 401 A 1 HETATM 6 O O3 OXM . . . C 2 17.846 35.744 32.715 1 26.2 ? O3 OXM 401 A 1 HETATM 7 H HN1 OXM . . . C 2 18.692 35.403 29.103 1 32.72 ? HN1 OXM 401 A 1 HETATM 8 H HN2 OXM . . . C 2 19.231 35.275 30.772 1 32.72 ? HN2 OXM 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 480 _model_server_stats.encode_time_ms 28 _model_server_stats.element_count 8 #