data_6K1B # _model_server_result.job_id aVqnn1xW6FIOtAj4O-jFyw _model_server_result.datetime_utc '2024-10-19 02:21:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 6K1B # _exptl.entry_id 6K1B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K1B _cell.length_a 46.339 _cell.length_b 73.571 _cell.length_c 131.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 33 A ASP 108 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc2 A OD1 ASP 33 A ASP 108 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc3 A OE2 GLU 35 A GLU 110 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc4 A OD2 ASP 171 A ASP 246 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc5 C MN MN . A MN 301 1_555 G O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc6 C MN MN . A MN 301 1_555 G O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc7 C MN MN . A MN 301 1_555 B OD2 ASP 171 B ASP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc8 C MN MN . A MN 301 1_555 H O HOH . B HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc9 D MN MN . A MN 302 1_555 G O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc10 D MN MN . A MN 302 1_555 G O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc11 D MN MN . A MN 302 1_555 G O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc12 D MN MN . A MN 302 1_555 G O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc13 E MN MN . A MN 303 1_555 G O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? metalc ? metalc14 E MN MN . A MN 303 1_555 B OD2 ASP 33 B ASP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc15 E MN MN . A MN 303 1_555 B OE2 GLU 35 B GLU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc16 E MN MN . A MN 303 1_555 H O HOH . B HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc17 B OD1 ASP 33 B ASP 108 1_555 F MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc18 F MN MN . B MN 301 1_555 H O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc19 F MN MN . B MN 301 1_555 H O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc20 F MN MN . B MN 301 1_555 H O HOH . B HOH 434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc21 F MN MN . B MN 301 1_555 H O HOH . B HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6K1B _atom_sites.fract_transf_matrix[1][1] 0.02158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013592 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 301 1 MN MN . D 2 MN A 1 302 2 MN MN . E 2 MN A 1 303 3 MN MN . F 2 MN B 1 301 4 MN MN . G 3 HOH A 1 401 11 HOH HOH . G 3 HOH A 2 402 98 HOH HOH . G 3 HOH A 3 403 102 HOH HOH . G 3 HOH A 4 404 66 HOH HOH . G 3 HOH A 5 405 20 HOH HOH . G 3 HOH A 6 406 70 HOH HOH . G 3 HOH A 7 407 28 HOH HOH . G 3 HOH A 8 408 29 HOH HOH . G 3 HOH A 9 409 100 HOH HOH . G 3 HOH A 10 410 25 HOH HOH . G 3 HOH A 11 411 27 HOH HOH . G 3 HOH A 12 412 101 HOH HOH . G 3 HOH A 13 413 12 HOH HOH . G 3 HOH A 14 414 62 HOH HOH . G 3 HOH A 15 415 8 HOH HOH . G 3 HOH A 16 416 6 HOH HOH . G 3 HOH A 17 417 96 HOH HOH . G 3 HOH A 18 418 38 HOH HOH . G 3 HOH A 19 419 69 HOH HOH . G 3 HOH A 20 420 15 HOH HOH . G 3 HOH A 21 421 23 HOH HOH . G 3 HOH A 22 422 78 HOH HOH . G 3 HOH A 23 423 24 HOH HOH . G 3 HOH A 24 424 74 HOH HOH . G 3 HOH A 25 425 79 HOH HOH . G 3 HOH A 26 426 82 HOH HOH . G 3 HOH A 27 427 72 HOH HOH . G 3 HOH A 28 428 67 HOH HOH . G 3 HOH A 29 429 71 HOH HOH . G 3 HOH A 30 430 94 HOH HOH . G 3 HOH A 31 431 51 HOH HOH . G 3 HOH A 32 432 83 HOH HOH . G 3 HOH A 33 433 2 HOH HOH . G 3 HOH A 34 434 43 HOH HOH . G 3 HOH A 35 435 75 HOH HOH . G 3 HOH A 36 436 48 HOH HOH . G 3 HOH A 37 437 104 HOH HOH . G 3 HOH A 38 438 26 HOH HOH . G 3 HOH A 39 439 19 HOH HOH . G 3 HOH A 40 440 45 HOH HOH . G 3 HOH A 41 441 85 HOH HOH . G 3 HOH A 42 442 42 HOH HOH . G 3 HOH A 43 443 31 HOH HOH . G 3 HOH A 44 444 35 HOH HOH . G 3 HOH A 45 445 86 HOH HOH . G 3 HOH A 46 446 60 HOH HOH . G 3 HOH A 47 447 44 HOH HOH . G 3 HOH A 48 448 84 HOH HOH . G 3 HOH A 49 449 49 HOH HOH . G 3 HOH A 50 450 77 HOH HOH . G 3 HOH A 51 451 73 HOH HOH . G 3 HOH A 52 452 80 HOH HOH . G 3 HOH A 53 453 41 HOH HOH . G 3 HOH A 54 454 76 HOH HOH . G 3 HOH A 55 455 103 HOH HOH . G 3 HOH A 56 456 50 HOH HOH . G 3 HOH A 57 457 46 HOH HOH . G 3 HOH A 58 458 36 HOH HOH . G 3 HOH A 59 459 95 HOH HOH . G 3 HOH A 60 460 81 HOH HOH . G 3 HOH A 61 461 105 HOH HOH . H 3 HOH B 1 401 17 HOH HOH . H 3 HOH B 2 402 9 HOH HOH . H 3 HOH B 3 403 88 HOH HOH . H 3 HOH B 4 404 30 HOH HOH . H 3 HOH B 5 405 34 HOH HOH . H 3 HOH B 6 406 89 HOH HOH . H 3 HOH B 7 407 3 HOH HOH . H 3 HOH B 8 408 64 HOH HOH . H 3 HOH B 9 409 13 HOH HOH . H 3 HOH B 10 410 65 HOH HOH . H 3 HOH B 11 411 21 HOH HOH . H 3 HOH B 12 412 18 HOH HOH . H 3 HOH B 13 413 14 HOH HOH . H 3 HOH B 14 414 40 HOH HOH . H 3 HOH B 15 415 53 HOH HOH . H 3 HOH B 16 416 106 HOH HOH . H 3 HOH B 17 417 4 HOH HOH . H 3 HOH B 18 418 5 HOH HOH . H 3 HOH B 19 419 91 HOH HOH . H 3 HOH B 20 420 58 HOH HOH . H 3 HOH B 21 421 10 HOH HOH . H 3 HOH B 22 422 47 HOH HOH . H 3 HOH B 23 423 22 HOH HOH . H 3 HOH B 24 424 16 HOH HOH . H 3 HOH B 25 425 52 HOH HOH . H 3 HOH B 26 426 90 HOH HOH . H 3 HOH B 27 427 61 HOH HOH . H 3 HOH B 28 428 56 HOH HOH . H 3 HOH B 29 429 93 HOH HOH . H 3 HOH B 30 430 87 HOH HOH . H 3 HOH B 31 431 92 HOH HOH . H 3 HOH B 32 432 32 HOH HOH . H 3 HOH B 33 433 63 HOH HOH . H 3 HOH B 34 434 1 HOH HOH . H 3 HOH B 35 435 54 HOH HOH . H 3 HOH B 36 436 55 HOH HOH . H 3 HOH B 37 437 107 HOH HOH . H 3 HOH B 38 438 57 HOH HOH . H 3 HOH B 39 439 97 HOH HOH . H 3 HOH B 40 440 37 HOH HOH . H 3 HOH B 41 441 68 HOH HOH . H 3 HOH B 42 442 39 HOH HOH . H 3 HOH B 43 443 59 HOH HOH . H 3 HOH B 44 444 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -20.356 _atom_site.Cartn_y 1.301 _atom_site.Cartn_z -0.3 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #