data_6K1D # _model_server_result.job_id soezPvPosNvDuJPbqf6emg _model_server_result.datetime_utc '2024-12-23 06:16:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6K1D # _exptl.entry_id 6K1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K1D _cell.length_a 46.528 _cell.length_b 73.931 _cell.length_c 132.543 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 33 A ASP 108 1_555 C MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 A OD2 ASP 33 A ASP 108 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc3 A OE2 GLU 35 A GLU 110 1_555 D MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc4 A OD2 ASP 171 A ASP 246 1_555 E MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc5 C MN MN . A MN 301 1_555 G O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc6 C MN MN . A MN 301 1_555 G O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc7 C MN MN . A MN 301 1_555 G O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc8 C MN MN . A MN 301 1_555 G O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc9 D MN MN . A MN 302 1_555 G O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc10 D MN MN . A MN 302 1_555 B OD2 ASP 171 B ASP 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc11 D MN MN . A MN 302 1_555 H O HOH . B HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc12 E MN MN . A MN 303 1_555 B OD2 ASP 33 B ASP 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc13 E MN MN . A MN 303 1_555 B OE2 GLU 35 B GLU 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc14 E MN MN . A MN 303 1_555 H O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc15 E MN MN . A MN 303 1_555 H O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc16 B OD1 ASP 33 B ASP 108 1_555 F MN MN . B MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc17 F MN MN . B MN 301 1_555 H O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc18 F MN MN . B MN 301 1_555 H O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc19 F MN MN . B MN 301 1_555 H O HOH . B HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6K1D _atom_sites.fract_transf_matrix[1][1] 0.021492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013526 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 301 1 MN MN . D 2 MN A 1 302 2 MN MN . E 2 MN A 1 303 3 MN MN . F 2 MN B 1 301 4 MN MN . G 3 HOH A 1 401 4 HOH HOH . G 3 HOH A 2 402 10 HOH HOH . G 3 HOH A 3 403 16 HOH HOH . G 3 HOH A 4 404 3 HOH HOH . G 3 HOH A 5 405 11 HOH HOH . G 3 HOH A 6 406 5 HOH HOH . G 3 HOH A 7 407 14 HOH HOH . G 3 HOH A 8 408 1 HOH HOH . G 3 HOH A 9 409 15 HOH HOH . G 3 HOH A 10 410 2 HOH HOH . H 3 HOH B 1 401 8 HOH HOH . H 3 HOH B 2 402 13 HOH HOH . H 3 HOH B 3 403 12 HOH HOH . H 3 HOH B 4 404 20 HOH HOH . H 3 HOH B 5 405 17 HOH HOH . H 3 HOH B 6 406 6 HOH HOH . H 3 HOH B 7 407 19 HOH HOH . H 3 HOH B 8 408 7 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.823 _atom_site.Cartn_y 1.76 _atom_site.Cartn_z 44.158 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #