data_6K1L
#
_model_server_result.job_id            shzcH4UonEAEz_qk9X4c4Q 
_model_server_result.datetime_utc      '2024-11-12 20:19:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k1l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    6K1L 
#
_exptl.entry_id    6K1L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K1L 
_cell.length_a            59.97 
_cell.length_b            148.46 
_cell.length_c            156.97 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K1L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 J N N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     6K1L 
_atom_sites.fract_transf_matrix[1][1]    0.016675 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006736 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLP A 1 600 600 PLP PLP . 
F 2 PLP B 1 401 600 PLP PLP . 
G 3 PYR B 1 402 701 PYR PYR . 
H 2 PLP C 1 401 600 PLP PLP . 
I 3 PYR C 1 402 701 PYR PYR . 
J 2 PLP D 1 600 600 PLP PLP . 
K 4 HOH A 1 701 87 HOH HOH . 
K 4 HOH A 2 702 217 HOH HOH . 
K 4 HOH A 3 703 179 HOH HOH . 
K 4 HOH A 4 704 221 HOH HOH . 
K 4 HOH A 5 705 229 HOH HOH . 
K 4 HOH A 6 706 207 HOH HOH . 
K 4 HOH A 7 707 210 HOH HOH . 
K 4 HOH A 8 708 148 HOH HOH . 
K 4 HOH A 9 709 209 HOH HOH . 
K 4 HOH A 10 710 77 HOH HOH . 
K 4 HOH A 11 711 203 HOH HOH . 
K 4 HOH A 12 712 30 HOH HOH . 
K 4 HOH A 13 713 159 HOH HOH . 
K 4 HOH A 14 714 29 HOH HOH . 
K 4 HOH A 15 715 7 HOH HOH . 
K 4 HOH A 16 716 200 HOH HOH . 
K 4 HOH A 17 717 53 HOH HOH . 
K 4 HOH A 18 718 133 HOH HOH . 
K 4 HOH A 19 719 19 HOH HOH . 
K 4 HOH A 20 720 13 HOH HOH . 
K 4 HOH A 21 721 134 HOH HOH . 
K 4 HOH A 22 722 9 HOH HOH . 
K 4 HOH A 23 723 119 HOH HOH . 
K 4 HOH A 24 724 70 HOH HOH . 
K 4 HOH A 25 725 89 HOH HOH . 
K 4 HOH A 26 726 187 HOH HOH . 
K 4 HOH A 27 727 47 HOH HOH . 
K 4 HOH A 28 728 49 HOH HOH . 
K 4 HOH A 29 729 65 HOH HOH . 
K 4 HOH A 30 730 37 HOH HOH . 
K 4 HOH A 31 731 158 HOH HOH . 
K 4 HOH A 32 732 164 HOH HOH . 
K 4 HOH A 33 733 43 HOH HOH . 
K 4 HOH A 34 734 98 HOH HOH . 
K 4 HOH A 35 735 31 HOH HOH . 
K 4 HOH A 36 736 219 HOH HOH . 
K 4 HOH A 37 737 157 HOH HOH . 
K 4 HOH A 38 738 111 HOH HOH . 
K 4 HOH A 39 739 216 HOH HOH . 
K 4 HOH A 40 740 192 HOH HOH . 
K 4 HOH A 41 741 188 HOH HOH . 
K 4 HOH A 42 742 224 HOH HOH . 
K 4 HOH A 43 743 41 HOH HOH . 
K 4 HOH A 44 744 189 HOH HOH . 
K 4 HOH A 45 745 215 HOH HOH . 
L 4 HOH B 1 501 168 HOH HOH . 
L 4 HOH B 2 502 144 HOH HOH . 
L 4 HOH B 3 503 163 HOH HOH . 
L 4 HOH B 4 504 66 HOH HOH . 
L 4 HOH B 5 505 28 HOH HOH . 
L 4 HOH B 6 506 2 HOH HOH . 
L 4 HOH B 7 507 124 HOH HOH . 
L 4 HOH B 8 508 63 HOH HOH . 
L 4 HOH B 9 509 23 HOH HOH . 
L 4 HOH B 10 510 139 HOH HOH . 
L 4 HOH B 11 511 82 HOH HOH . 
L 4 HOH B 12 512 151 HOH HOH . 
L 4 HOH B 13 513 56 HOH HOH . 
L 4 HOH B 14 514 160 HOH HOH . 
L 4 HOH B 15 515 197 HOH HOH . 
L 4 HOH B 16 516 193 HOH HOH . 
L 4 HOH B 17 517 61 HOH HOH . 
L 4 HOH B 18 518 55 HOH HOH . 
L 4 HOH B 19 519 114 HOH HOH . 
L 4 HOH B 20 520 75 HOH HOH . 
L 4 HOH B 21 521 194 HOH HOH . 
L 4 HOH B 22 522 115 HOH HOH . 
L 4 HOH B 23 523 83 HOH HOH . 
L 4 HOH B 24 524 161 HOH HOH . 
L 4 HOH B 25 525 8 HOH HOH . 
L 4 HOH B 26 526 52 HOH HOH . 
L 4 HOH B 27 527 106 HOH HOH . 
L 4 HOH B 28 528 170 HOH HOH . 
L 4 HOH B 29 529 167 HOH HOH . 
L 4 HOH B 30 530 68 HOH HOH . 
L 4 HOH B 31 531 22 HOH HOH . 
L 4 HOH B 32 532 143 HOH HOH . 
L 4 HOH B 33 533 185 HOH HOH . 
L 4 HOH B 34 534 213 HOH HOH . 
L 4 HOH B 35 535 39 HOH HOH . 
L 4 HOH B 36 536 4 HOH HOH . 
L 4 HOH B 37 537 128 HOH HOH . 
L 4 HOH B 38 538 120 HOH HOH . 
L 4 HOH B 39 539 50 HOH HOH . 
L 4 HOH B 40 540 205 HOH HOH . 
L 4 HOH B 41 541 103 HOH HOH . 
L 4 HOH B 42 542 214 HOH HOH . 
L 4 HOH B 43 543 48 HOH HOH . 
L 4 HOH B 44 544 177 HOH HOH . 
L 4 HOH B 45 545 6 HOH HOH . 
L 4 HOH B 46 546 64 HOH HOH . 
L 4 HOH B 47 547 204 HOH HOH . 
L 4 HOH B 48 548 165 HOH HOH . 
L 4 HOH B 49 549 104 HOH HOH . 
L 4 HOH B 50 550 206 HOH HOH . 
L 4 HOH B 51 551 97 HOH HOH . 
L 4 HOH B 52 552 91 HOH HOH . 
L 4 HOH B 53 553 180 HOH HOH . 
L 4 HOH B 54 554 20 HOH HOH . 
L 4 HOH B 55 555 38 HOH HOH . 
L 4 HOH B 56 556 85 HOH HOH . 
L 4 HOH B 57 557 131 HOH HOH . 
L 4 HOH B 58 558 199 HOH HOH . 
L 4 HOH B 59 559 72 HOH HOH . 
L 4 HOH B 60 560 222 HOH HOH . 
L 4 HOH B 61 561 169 HOH HOH . 
L 4 HOH B 62 562 127 HOH HOH . 
L 4 HOH B 63 563 181 HOH HOH . 
L 4 HOH B 64 564 150 HOH HOH . 
L 4 HOH B 65 565 178 HOH HOH . 
L 4 HOH B 66 566 149 HOH HOH . 
L 4 HOH B 67 567 191 HOH HOH . 
L 4 HOH B 68 568 195 HOH HOH . 
L 4 HOH B 69 569 174 HOH HOH . 
M 4 HOH C 1 501 51 HOH HOH . 
M 4 HOH C 2 502 230 HOH HOH . 
M 4 HOH C 3 503 137 HOH HOH . 
M 4 HOH C 4 504 32 HOH HOH . 
M 4 HOH C 5 505 12 HOH HOH . 
M 4 HOH C 6 506 42 HOH HOH . 
M 4 HOH C 7 507 153 HOH HOH . 
M 4 HOH C 8 508 35 HOH HOH . 
M 4 HOH C 9 509 1 HOH HOH . 
M 4 HOH C 10 510 44 HOH HOH . 
M 4 HOH C 11 511 34 HOH HOH . 
M 4 HOH C 12 512 17 HOH HOH . 
M 4 HOH C 13 513 59 HOH HOH . 
M 4 HOH C 14 514 212 HOH HOH . 
M 4 HOH C 15 515 90 HOH HOH . 
M 4 HOH C 16 516 40 HOH HOH . 
M 4 HOH C 17 517 26 HOH HOH . 
M 4 HOH C 18 518 171 HOH HOH . 
M 4 HOH C 19 519 113 HOH HOH . 
M 4 HOH C 20 520 76 HOH HOH . 
M 4 HOH C 21 521 142 HOH HOH . 
M 4 HOH C 22 522 45 HOH HOH . 
M 4 HOH C 23 523 117 HOH HOH . 
M 4 HOH C 24 524 81 HOH HOH . 
M 4 HOH C 25 525 36 HOH HOH . 
M 4 HOH C 26 526 73 HOH HOH . 
M 4 HOH C 27 527 96 HOH HOH . 
M 4 HOH C 28 528 110 HOH HOH . 
M 4 HOH C 29 529 116 HOH HOH . 
M 4 HOH C 30 530 99 HOH HOH . 
M 4 HOH C 31 531 69 HOH HOH . 
M 4 HOH C 32 532 118 HOH HOH . 
M 4 HOH C 33 533 140 HOH HOH . 
M 4 HOH C 34 534 107 HOH HOH . 
M 4 HOH C 35 535 123 HOH HOH . 
N 4 HOH D 1 701 60 HOH HOH . 
N 4 HOH D 2 702 231 HOH HOH . 
N 4 HOH D 3 703 88 HOH HOH . 
N 4 HOH D 4 704 62 HOH HOH . 
N 4 HOH D 5 705 227 HOH HOH . 
N 4 HOH D 6 706 16 HOH HOH . 
N 4 HOH D 7 707 58 HOH HOH . 
N 4 HOH D 8 708 10 HOH HOH . 
N 4 HOH D 9 709 80 HOH HOH . 
N 4 HOH D 10 710 202 HOH HOH . 
N 4 HOH D 11 711 3 HOH HOH . 
N 4 HOH D 12 712 147 HOH HOH . 
N 4 HOH D 13 713 21 HOH HOH . 
N 4 HOH D 14 714 235 HOH HOH . 
N 4 HOH D 15 715 79 HOH HOH . 
N 4 HOH D 16 716 102 HOH HOH . 
N 4 HOH D 17 717 78 HOH HOH . 
N 4 HOH D 18 718 67 HOH HOH . 
N 4 HOH D 19 719 122 HOH HOH . 
N 4 HOH D 20 720 100 HOH HOH . 
N 4 HOH D 21 721 154 HOH HOH . 
N 4 HOH D 22 722 173 HOH HOH . 
N 4 HOH D 23 723 25 HOH HOH . 
N 4 HOH D 24 724 14 HOH HOH . 
N 4 HOH D 25 725 57 HOH HOH . 
N 4 HOH D 26 726 234 HOH HOH . 
N 4 HOH D 27 727 24 HOH HOH . 
N 4 HOH D 28 728 54 HOH HOH . 
N 4 HOH D 29 729 5 HOH HOH . 
N 4 HOH D 30 730 132 HOH HOH . 
N 4 HOH D 31 731 109 HOH HOH . 
N 4 HOH D 32 732 182 HOH HOH . 
N 4 HOH D 33 733 86 HOH HOH . 
N 4 HOH D 34 734 236 HOH HOH . 
N 4 HOH D 35 735 208 HOH HOH . 
N 4 HOH D 36 736 126 HOH HOH . 
N 4 HOH D 37 737 74 HOH HOH . 
N 4 HOH D 38 738 94 HOH HOH . 
N 4 HOH D 39 739 223 HOH HOH . 
N 4 HOH D 40 740 138 HOH HOH . 
N 4 HOH D 41 741 33 HOH HOH . 
N 4 HOH D 42 742 71 HOH HOH . 
N 4 HOH D 43 743 108 HOH HOH . 
N 4 HOH D 44 744 95 HOH HOH . 
N 4 HOH D 45 745 129 HOH HOH . 
N 4 HOH D 46 746 121 HOH HOH . 
N 4 HOH D 47 747 233 HOH HOH . 
N 4 HOH D 48 748 201 HOH HOH . 
N 4 HOH D 49 749 155 HOH HOH . 
N 4 HOH D 50 750 232 HOH HOH . 
N 4 HOH D 51 751 152 HOH HOH . 
N 4 HOH D 52 752 196 HOH HOH . 
N 4 HOH D 53 753 145 HOH HOH . 
N 4 HOH D 54 754 105 HOH HOH . 
N 4 HOH D 55 755 183 HOH HOH . 
N 4 HOH D 56 756 186 HOH HOH . 
N 4 HOH D 57 757 225 HOH HOH . 
N 4 HOH D 58 758 184 HOH HOH . 
N 4 HOH D 59 759 146 HOH HOH . 
N 4 HOH D 60 760 190 HOH HOH . 
N 4 HOH D 61 761 136 HOH HOH . 
N 4 HOH D 62 762 162 HOH HOH . 
N 4 HOH D 63 763 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . F 2 5.665 -3.105 -34.189 1 48.67 ? N1 PLP 401 B 1 
HETATM 2 C C2 PLP . . . F 2 6.604 -3.872 -34.714 1 42.66 ? C2 PLP 401 B 1 
HETATM 3 C C2A PLP . . . F 2 6.933 -5.161 -34.052 1 37.52 ? C2A PLP 401 B 1 
HETATM 4 C C3 PLP . . . F 2 7.243 -3.497 -35.886 1 49.31 ? C3 PLP 401 B 1 
HETATM 5 O O3 PLP . . . F 2 8.165 -4.326 -36.398 1 39.62 ? O3 PLP 401 B 1 
HETATM 6 C C4 PLP . . . F 2 6.912 -2.276 -36.508 1 61.14 ? C4 PLP 401 B 1 
HETATM 7 C C4A PLP . . . F 2 7.595 -1.909 -37.744 1 63.65 ? C4A PLP 401 B 1 
HETATM 8 C C5 PLP . . . F 2 5.942 -1.452 -35.918 1 57.67 ? C5 PLP 401 B 1 
HETATM 9 C C6 PLP . . . F 2 5.366 -1.922 -34.77 1 56.66 ? C6 PLP 401 B 1 
HETATM 10 C C5A PLP . . . F 2 5.523 -0.123 -36.498 1 59.18 ? C5A PLP 401 B 1 
HETATM 11 O O4P PLP . . . F 2 5.155 -0.139 -37.918 1 60.47 ? O4P PLP 401 B 1 
HETATM 12 P P PLP . . . F 2 5.107 0.967 -39.066 1 50.07 ? P PLP 401 B 1 
HETATM 13 O O1P PLP . . . F 2 6.275 0.703 -39.898 1 51.73 ? O1P PLP 401 B 1 
HETATM 14 O O2P PLP . . . F 2 3.869 0.738 -39.795 1 47.68 ? O2P PLP 401 B 1 
HETATM 15 O O3P PLP . . . F 2 5.117 2.253 -38.459 1 45.15 ? O3P PLP 401 B 1 
#
_model_server_stats.io_time_ms              114 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    48 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           15 
#