data_6K1L # _model_server_result.job_id ZVbb_JfzmTnJaw3fyfwZPQ _model_server_result.datetime_utc '2024-12-06 15:03:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k1l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 6K1L # _exptl.entry_id 6K1L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K1L _cell.length_a 59.97 _cell.length_b 148.46 _cell.length_c 156.97 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K1L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 J N N # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 260 n y N1 C6 PLP sing 261 n y C2 C2A PLP sing 262 n n C2 C3 PLP sing 263 n y C2A H2A1 PLP sing 264 n n C2A H2A2 PLP sing 265 n n C2A H2A3 PLP sing 266 n n C3 O3 PLP sing 267 n n C3 C4 PLP doub 268 n y O3 HO3 PLP sing 269 n n C4 C4A PLP sing 270 n n C4 C5 PLP sing 271 n y C4A O4A PLP doub 272 n n C4A H4A PLP sing 273 n n C5 C6 PLP doub 274 n y C5 C5A PLP sing 275 n n C6 H6 PLP sing 276 n n C5A O4P PLP sing 277 n n C5A H5A1 PLP sing 278 n n C5A H5A2 PLP sing 279 n n O4P P PLP sing 280 n n P O1P PLP doub 281 n n P O2P PLP sing 282 n n P O3P PLP sing 283 n n O2P HOP2 PLP sing 284 n n O3P HOP3 PLP sing 285 n n # _atom_sites.entry_id 6K1L _atom_sites.fract_transf_matrix[1][1] 0.016675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLP A 1 600 600 PLP PLP . F 2 PLP B 1 401 600 PLP PLP . G 3 PYR B 1 402 701 PYR PYR . H 2 PLP C 1 401 600 PLP PLP . I 3 PYR C 1 402 701 PYR PYR . J 2 PLP D 1 600 600 PLP PLP . K 4 HOH A 1 701 87 HOH HOH . K 4 HOH A 2 702 217 HOH HOH . K 4 HOH A 3 703 179 HOH HOH . K 4 HOH A 4 704 221 HOH HOH . K 4 HOH A 5 705 229 HOH HOH . K 4 HOH A 6 706 207 HOH HOH . K 4 HOH A 7 707 210 HOH HOH . K 4 HOH A 8 708 148 HOH HOH . K 4 HOH A 9 709 209 HOH HOH . K 4 HOH A 10 710 77 HOH HOH . K 4 HOH A 11 711 203 HOH HOH . K 4 HOH A 12 712 30 HOH HOH . K 4 HOH A 13 713 159 HOH HOH . K 4 HOH A 14 714 29 HOH HOH . K 4 HOH A 15 715 7 HOH HOH . K 4 HOH A 16 716 200 HOH HOH . K 4 HOH A 17 717 53 HOH HOH . K 4 HOH A 18 718 133 HOH HOH . K 4 HOH A 19 719 19 HOH HOH . K 4 HOH A 20 720 13 HOH HOH . K 4 HOH A 21 721 134 HOH HOH . K 4 HOH A 22 722 9 HOH HOH . K 4 HOH A 23 723 119 HOH HOH . K 4 HOH A 24 724 70 HOH HOH . K 4 HOH A 25 725 89 HOH HOH . K 4 HOH A 26 726 187 HOH HOH . K 4 HOH A 27 727 47 HOH HOH . K 4 HOH A 28 728 49 HOH HOH . K 4 HOH A 29 729 65 HOH HOH . K 4 HOH A 30 730 37 HOH HOH . K 4 HOH A 31 731 158 HOH HOH . K 4 HOH A 32 732 164 HOH HOH . K 4 HOH A 33 733 43 HOH HOH . K 4 HOH A 34 734 98 HOH HOH . K 4 HOH A 35 735 31 HOH HOH . K 4 HOH A 36 736 219 HOH HOH . K 4 HOH A 37 737 157 HOH HOH . K 4 HOH A 38 738 111 HOH HOH . K 4 HOH A 39 739 216 HOH HOH . K 4 HOH A 40 740 192 HOH HOH . K 4 HOH A 41 741 188 HOH HOH . K 4 HOH A 42 742 224 HOH HOH . K 4 HOH A 43 743 41 HOH HOH . K 4 HOH A 44 744 189 HOH HOH . K 4 HOH A 45 745 215 HOH HOH . L 4 HOH B 1 501 168 HOH HOH . L 4 HOH B 2 502 144 HOH HOH . L 4 HOH B 3 503 163 HOH HOH . L 4 HOH B 4 504 66 HOH HOH . L 4 HOH B 5 505 28 HOH HOH . L 4 HOH B 6 506 2 HOH HOH . L 4 HOH B 7 507 124 HOH HOH . L 4 HOH B 8 508 63 HOH HOH . L 4 HOH B 9 509 23 HOH HOH . L 4 HOH B 10 510 139 HOH HOH . L 4 HOH B 11 511 82 HOH HOH . L 4 HOH B 12 512 151 HOH HOH . L 4 HOH B 13 513 56 HOH HOH . L 4 HOH B 14 514 160 HOH HOH . L 4 HOH B 15 515 197 HOH HOH . L 4 HOH B 16 516 193 HOH HOH . L 4 HOH B 17 517 61 HOH HOH . L 4 HOH B 18 518 55 HOH HOH . L 4 HOH B 19 519 114 HOH HOH . L 4 HOH B 20 520 75 HOH HOH . L 4 HOH B 21 521 194 HOH HOH . L 4 HOH B 22 522 115 HOH HOH . L 4 HOH B 23 523 83 HOH HOH . L 4 HOH B 24 524 161 HOH HOH . L 4 HOH B 25 525 8 HOH HOH . L 4 HOH B 26 526 52 HOH HOH . L 4 HOH B 27 527 106 HOH HOH . L 4 HOH B 28 528 170 HOH HOH . L 4 HOH B 29 529 167 HOH HOH . L 4 HOH B 30 530 68 HOH HOH . L 4 HOH B 31 531 22 HOH HOH . L 4 HOH B 32 532 143 HOH HOH . L 4 HOH B 33 533 185 HOH HOH . L 4 HOH B 34 534 213 HOH HOH . L 4 HOH B 35 535 39 HOH HOH . L 4 HOH B 36 536 4 HOH HOH . L 4 HOH B 37 537 128 HOH HOH . L 4 HOH B 38 538 120 HOH HOH . L 4 HOH B 39 539 50 HOH HOH . L 4 HOH B 40 540 205 HOH HOH . L 4 HOH B 41 541 103 HOH HOH . L 4 HOH B 42 542 214 HOH HOH . L 4 HOH B 43 543 48 HOH HOH . L 4 HOH B 44 544 177 HOH HOH . L 4 HOH B 45 545 6 HOH HOH . L 4 HOH B 46 546 64 HOH HOH . L 4 HOH B 47 547 204 HOH HOH . L 4 HOH B 48 548 165 HOH HOH . L 4 HOH B 49 549 104 HOH HOH . L 4 HOH B 50 550 206 HOH HOH . L 4 HOH B 51 551 97 HOH HOH . L 4 HOH B 52 552 91 HOH HOH . L 4 HOH B 53 553 180 HOH HOH . L 4 HOH B 54 554 20 HOH HOH . L 4 HOH B 55 555 38 HOH HOH . L 4 HOH B 56 556 85 HOH HOH . L 4 HOH B 57 557 131 HOH HOH . L 4 HOH B 58 558 199 HOH HOH . L 4 HOH B 59 559 72 HOH HOH . L 4 HOH B 60 560 222 HOH HOH . L 4 HOH B 61 561 169 HOH HOH . L 4 HOH B 62 562 127 HOH HOH . L 4 HOH B 63 563 181 HOH HOH . L 4 HOH B 64 564 150 HOH HOH . L 4 HOH B 65 565 178 HOH HOH . L 4 HOH B 66 566 149 HOH HOH . L 4 HOH B 67 567 191 HOH HOH . L 4 HOH B 68 568 195 HOH HOH . L 4 HOH B 69 569 174 HOH HOH . M 4 HOH C 1 501 51 HOH HOH . M 4 HOH C 2 502 230 HOH HOH . M 4 HOH C 3 503 137 HOH HOH . M 4 HOH C 4 504 32 HOH HOH . M 4 HOH C 5 505 12 HOH HOH . M 4 HOH C 6 506 42 HOH HOH . M 4 HOH C 7 507 153 HOH HOH . M 4 HOH C 8 508 35 HOH HOH . M 4 HOH C 9 509 1 HOH HOH . M 4 HOH C 10 510 44 HOH HOH . M 4 HOH C 11 511 34 HOH HOH . M 4 HOH C 12 512 17 HOH HOH . M 4 HOH C 13 513 59 HOH HOH . M 4 HOH C 14 514 212 HOH HOH . M 4 HOH C 15 515 90 HOH HOH . M 4 HOH C 16 516 40 HOH HOH . M 4 HOH C 17 517 26 HOH HOH . M 4 HOH C 18 518 171 HOH HOH . M 4 HOH C 19 519 113 HOH HOH . M 4 HOH C 20 520 76 HOH HOH . M 4 HOH C 21 521 142 HOH HOH . M 4 HOH C 22 522 45 HOH HOH . M 4 HOH C 23 523 117 HOH HOH . M 4 HOH C 24 524 81 HOH HOH . M 4 HOH C 25 525 36 HOH HOH . M 4 HOH C 26 526 73 HOH HOH . M 4 HOH C 27 527 96 HOH HOH . M 4 HOH C 28 528 110 HOH HOH . M 4 HOH C 29 529 116 HOH HOH . M 4 HOH C 30 530 99 HOH HOH . M 4 HOH C 31 531 69 HOH HOH . M 4 HOH C 32 532 118 HOH HOH . M 4 HOH C 33 533 140 HOH HOH . M 4 HOH C 34 534 107 HOH HOH . M 4 HOH C 35 535 123 HOH HOH . N 4 HOH D 1 701 60 HOH HOH . N 4 HOH D 2 702 231 HOH HOH . N 4 HOH D 3 703 88 HOH HOH . N 4 HOH D 4 704 62 HOH HOH . N 4 HOH D 5 705 227 HOH HOH . N 4 HOH D 6 706 16 HOH HOH . N 4 HOH D 7 707 58 HOH HOH . N 4 HOH D 8 708 10 HOH HOH . N 4 HOH D 9 709 80 HOH HOH . N 4 HOH D 10 710 202 HOH HOH . N 4 HOH D 11 711 3 HOH HOH . N 4 HOH D 12 712 147 HOH HOH . N 4 HOH D 13 713 21 HOH HOH . N 4 HOH D 14 714 235 HOH HOH . N 4 HOH D 15 715 79 HOH HOH . N 4 HOH D 16 716 102 HOH HOH . N 4 HOH D 17 717 78 HOH HOH . N 4 HOH D 18 718 67 HOH HOH . N 4 HOH D 19 719 122 HOH HOH . N 4 HOH D 20 720 100 HOH HOH . N 4 HOH D 21 721 154 HOH HOH . N 4 HOH D 22 722 173 HOH HOH . N 4 HOH D 23 723 25 HOH HOH . N 4 HOH D 24 724 14 HOH HOH . N 4 HOH D 25 725 57 HOH HOH . N 4 HOH D 26 726 234 HOH HOH . N 4 HOH D 27 727 24 HOH HOH . N 4 HOH D 28 728 54 HOH HOH . N 4 HOH D 29 729 5 HOH HOH . N 4 HOH D 30 730 132 HOH HOH . N 4 HOH D 31 731 109 HOH HOH . N 4 HOH D 32 732 182 HOH HOH . N 4 HOH D 33 733 86 HOH HOH . N 4 HOH D 34 734 236 HOH HOH . N 4 HOH D 35 735 208 HOH HOH . N 4 HOH D 36 736 126 HOH HOH . N 4 HOH D 37 737 74 HOH HOH . N 4 HOH D 38 738 94 HOH HOH . N 4 HOH D 39 739 223 HOH HOH . N 4 HOH D 40 740 138 HOH HOH . N 4 HOH D 41 741 33 HOH HOH . N 4 HOH D 42 742 71 HOH HOH . N 4 HOH D 43 743 108 HOH HOH . N 4 HOH D 44 744 95 HOH HOH . N 4 HOH D 45 745 129 HOH HOH . N 4 HOH D 46 746 121 HOH HOH . N 4 HOH D 47 747 233 HOH HOH . N 4 HOH D 48 748 201 HOH HOH . N 4 HOH D 49 749 155 HOH HOH . N 4 HOH D 50 750 232 HOH HOH . N 4 HOH D 51 751 152 HOH HOH . N 4 HOH D 52 752 196 HOH HOH . N 4 HOH D 53 753 145 HOH HOH . N 4 HOH D 54 754 105 HOH HOH . N 4 HOH D 55 755 183 HOH HOH . N 4 HOH D 56 756 186 HOH HOH . N 4 HOH D 57 757 225 HOH HOH . N 4 HOH D 58 758 184 HOH HOH . N 4 HOH D 59 759 146 HOH HOH . N 4 HOH D 60 760 190 HOH HOH . N 4 HOH D 61 761 136 HOH HOH . N 4 HOH D 62 762 162 HOH HOH . N 4 HOH D 63 763 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . H 2 -1.643 -16.477 -75.274 1 35.63 ? N1 PLP 401 C 1 HETATM 2 C C2 PLP . . . H 2 -2.324 -17.199 -74.312 1 40.31 ? C2 PLP 401 C 1 HETATM 3 C C2A PLP . . . H 2 -2.088 -18.668 -74.141 1 46.45 ? C2A PLP 401 C 1 HETATM 4 C C3 PLP . . . H 2 -3.24 -16.561 -73.49 1 43.53 ? C3 PLP 401 C 1 HETATM 5 O O3 PLP . . . H 2 -3.904 -17.278 -72.535 1 46.23 ? O3 PLP 401 C 1 HETATM 6 C C4 PLP . . . H 2 -3.482 -15.199 -73.633 1 47.8 ? C4 PLP 401 C 1 HETATM 7 C C4A PLP . . . H 2 -4.82 -14.665 -73.244 1 51.87 ? C4A PLP 401 C 1 HETATM 8 C C5 PLP . . . H 2 -2.801 -14.47 -74.598 1 43.66 ? C5 PLP 401 C 1 HETATM 9 C C6 PLP . . . H 2 -1.878 -15.117 -75.423 1 42.02 ? C6 PLP 401 C 1 HETATM 10 C C5A PLP . . . H 2 -3.105 -12.987 -74.713 1 44.53 ? C5A PLP 401 C 1 HETATM 11 O O4P PLP . . . H 2 -3.114 -12.394 -73.424 1 47.44 ? O4P PLP 401 C 1 HETATM 12 P P PLP . . . H 2 -3.976 -11.078 -73.037 1 35.85 ? P PLP 401 C 1 HETATM 13 O O1P PLP . . . H 2 -4.006 -10.12 -74.211 1 40.1 ? O1P PLP 401 C 1 HETATM 14 O O2P PLP . . . H 2 -5.387 -11.463 -72.658 1 36.38 ? O2P PLP 401 C 1 HETATM 15 O O3P PLP . . . H 2 -3.359 -10.435 -71.824 1 22.24 ? O3P PLP 401 C 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 500 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #