data_6K1M # _model_server_result.job_id cMVTw3DaOVgAI-7L9MsgxQ _model_server_result.datetime_utc '2024-11-09 02:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 6K1M # _exptl.entry_id 6K1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6K1M _cell.length_a 154.53 _cell.length_b 154.53 _cell.length_c 223.04 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 I N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 220 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 206 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 600 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.332 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 303 n n C OXT PYR sing 304 n n C CA PYR sing 305 n n OXT HXT PYR sing 306 n n CA O3 PYR doub 307 n n CA CB PYR sing 308 n n CB HB1 PYR sing 309 n n CB HB2 PYR sing 310 n n CB HB3 PYR sing 311 n n # _atom_sites.entry_id 6K1M _atom_sites.fract_transf_matrix[1][1] 0.006471 _atom_sites.fract_transf_matrix[1][2] 0.003736 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004484 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PLP A 1 600 600 PLP PLP . F 2 PLP B 1 401 600 PLP PLP . G 3 PYR B 1 402 701 PYR PYR . H 2 PLP C 1 401 600 PLP PLP . I 3 PYR C 1 402 701 PYR PYR . J 2 PLP D 1 600 600 PLP PLP . K 4 HOH A 1 701 82 HOH HOH . K 4 HOH A 2 702 181 HOH HOH . K 4 HOH A 3 703 163 HOH HOH . K 4 HOH A 4 704 13 HOH HOH . K 4 HOH A 5 705 67 HOH HOH . K 4 HOH A 6 706 255 HOH HOH . K 4 HOH A 7 707 15 HOH HOH . K 4 HOH A 8 708 190 HOH HOH . K 4 HOH A 9 709 210 HOH HOH . K 4 HOH A 10 710 261 HOH HOH . K 4 HOH A 11 711 17 HOH HOH . K 4 HOH A 12 712 189 HOH HOH . K 4 HOH A 13 713 89 HOH HOH . K 4 HOH A 14 714 81 HOH HOH . K 4 HOH A 15 715 112 HOH HOH . K 4 HOH A 16 716 166 HOH HOH . K 4 HOH A 17 717 10 HOH HOH . K 4 HOH A 18 718 60 HOH HOH . K 4 HOH A 19 719 117 HOH HOH . K 4 HOH A 20 720 19 HOH HOH . K 4 HOH A 21 721 192 HOH HOH . K 4 HOH A 22 722 126 HOH HOH . K 4 HOH A 23 723 22 HOH HOH . K 4 HOH A 24 724 143 HOH HOH . K 4 HOH A 25 725 171 HOH HOH . K 4 HOH A 26 726 142 HOH HOH . K 4 HOH A 27 727 99 HOH HOH . K 4 HOH A 28 728 21 HOH HOH . K 4 HOH A 29 729 278 HOH HOH . K 4 HOH A 30 730 185 HOH HOH . K 4 HOH A 31 731 42 HOH HOH . K 4 HOH A 32 732 77 HOH HOH . K 4 HOH A 33 733 97 HOH HOH . K 4 HOH A 34 734 148 HOH HOH . K 4 HOH A 35 735 72 HOH HOH . K 4 HOH A 36 736 289 HOH HOH . K 4 HOH A 37 737 38 HOH HOH . K 4 HOH A 38 738 253 HOH HOH . K 4 HOH A 39 739 206 HOH HOH . K 4 HOH A 40 740 39 HOH HOH . K 4 HOH A 41 741 180 HOH HOH . K 4 HOH A 42 742 56 HOH HOH . K 4 HOH A 43 743 287 HOH HOH . K 4 HOH A 44 744 182 HOH HOH . K 4 HOH A 45 745 109 HOH HOH . K 4 HOH A 46 746 87 HOH HOH . K 4 HOH A 47 747 170 HOH HOH . K 4 HOH A 48 748 241 HOH HOH . K 4 HOH A 49 749 83 HOH HOH . K 4 HOH A 50 750 159 HOH HOH . K 4 HOH A 51 751 266 HOH HOH . K 4 HOH A 52 752 235 HOH HOH . K 4 HOH A 53 753 216 HOH HOH . K 4 HOH A 54 754 74 HOH HOH . K 4 HOH A 55 755 212 HOH HOH . K 4 HOH A 56 756 144 HOH HOH . K 4 HOH A 57 757 208 HOH HOH . K 4 HOH A 58 758 214 HOH HOH . K 4 HOH A 59 759 276 HOH HOH . K 4 HOH A 60 760 153 HOH HOH . K 4 HOH A 61 761 275 HOH HOH . K 4 HOH A 62 762 222 HOH HOH . K 4 HOH A 63 763 272 HOH HOH . K 4 HOH A 64 764 240 HOH HOH . K 4 HOH A 65 765 150 HOH HOH . K 4 HOH A 66 766 306 HOH HOH . K 4 HOH A 67 767 282 HOH HOH . K 4 HOH A 68 768 229 HOH HOH . K 4 HOH A 69 769 298 HOH HOH . K 4 HOH A 70 770 303 HOH HOH . K 4 HOH A 71 771 315 HOH HOH . K 4 HOH A 72 772 231 HOH HOH . L 4 HOH B 1 501 32 HOH HOH . L 4 HOH B 2 502 69 HOH HOH . L 4 HOH B 3 503 31 HOH HOH . L 4 HOH B 4 504 63 HOH HOH . L 4 HOH B 5 505 1 HOH HOH . L 4 HOH B 6 506 51 HOH HOH . L 4 HOH B 7 507 118 HOH HOH . L 4 HOH B 8 508 68 HOH HOH . L 4 HOH B 9 509 26 HOH HOH . L 4 HOH B 10 510 46 HOH HOH . L 4 HOH B 11 511 207 HOH HOH . L 4 HOH B 12 512 105 HOH HOH . L 4 HOH B 13 513 199 HOH HOH . L 4 HOH B 14 514 12 HOH HOH . L 4 HOH B 15 515 88 HOH HOH . L 4 HOH B 16 516 61 HOH HOH . L 4 HOH B 17 517 123 HOH HOH . L 4 HOH B 18 518 178 HOH HOH . L 4 HOH B 19 519 49 HOH HOH . L 4 HOH B 20 520 92 HOH HOH . L 4 HOH B 21 521 264 HOH HOH . L 4 HOH B 22 522 37 HOH HOH . L 4 HOH B 23 523 108 HOH HOH . L 4 HOH B 24 524 201 HOH HOH . L 4 HOH B 25 525 244 HOH HOH . L 4 HOH B 26 526 16 HOH HOH . L 4 HOH B 27 527 85 HOH HOH . L 4 HOH B 28 528 177 HOH HOH . L 4 HOH B 29 529 130 HOH HOH . L 4 HOH B 30 530 288 HOH HOH . L 4 HOH B 31 531 50 HOH HOH . L 4 HOH B 32 532 64 HOH HOH . L 4 HOH B 33 533 284 HOH HOH . L 4 HOH B 34 534 270 HOH HOH . L 4 HOH B 35 535 165 HOH HOH . L 4 HOH B 36 536 18 HOH HOH . L 4 HOH B 37 537 202 HOH HOH . L 4 HOH B 38 538 173 HOH HOH . L 4 HOH B 39 539 43 HOH HOH . L 4 HOH B 40 540 265 HOH HOH . L 4 HOH B 41 541 116 HOH HOH . L 4 HOH B 42 542 273 HOH HOH . L 4 HOH B 43 543 187 HOH HOH . L 4 HOH B 44 544 286 HOH HOH . L 4 HOH B 45 545 283 HOH HOH . L 4 HOH B 46 546 274 HOH HOH . L 4 HOH B 47 547 243 HOH HOH . L 4 HOH B 48 548 223 HOH HOH . L 4 HOH B 49 549 317 HOH HOH . L 4 HOH B 50 550 294 HOH HOH . L 4 HOH B 51 551 169 HOH HOH . L 4 HOH B 52 552 200 HOH HOH . L 4 HOH B 53 553 78 HOH HOH . L 4 HOH B 54 554 80 HOH HOH . L 4 HOH B 55 555 305 HOH HOH . L 4 HOH B 56 556 106 HOH HOH . L 4 HOH B 57 557 162 HOH HOH . L 4 HOH B 58 558 292 HOH HOH . L 4 HOH B 59 559 302 HOH HOH . L 4 HOH B 60 560 233 HOH HOH . M 4 HOH C 1 501 215 HOH HOH . M 4 HOH C 2 502 7 HOH HOH . M 4 HOH C 3 503 93 HOH HOH . M 4 HOH C 4 504 2 HOH HOH . M 4 HOH C 5 505 254 HOH HOH . M 4 HOH C 6 506 9 HOH HOH . M 4 HOH C 7 507 205 HOH HOH . M 4 HOH C 8 508 91 HOH HOH . M 4 HOH C 9 509 135 HOH HOH . M 4 HOH C 10 510 188 HOH HOH . M 4 HOH C 11 511 8 HOH HOH . M 4 HOH C 12 512 29 HOH HOH . M 4 HOH C 13 513 48 HOH HOH . M 4 HOH C 14 514 45 HOH HOH . M 4 HOH C 15 515 115 HOH HOH . M 4 HOH C 16 516 127 HOH HOH . M 4 HOH C 17 517 40 HOH HOH . M 4 HOH C 18 518 30 HOH HOH . M 4 HOH C 19 519 249 HOH HOH . M 4 HOH C 20 520 137 HOH HOH . M 4 HOH C 21 521 107 HOH HOH . M 4 HOH C 22 522 96 HOH HOH . M 4 HOH C 23 523 25 HOH HOH . M 4 HOH C 24 524 5 HOH HOH . M 4 HOH C 25 525 213 HOH HOH . M 4 HOH C 26 526 102 HOH HOH . M 4 HOH C 27 527 183 HOH HOH . M 4 HOH C 28 528 179 HOH HOH . M 4 HOH C 29 529 90 HOH HOH . M 4 HOH C 30 530 86 HOH HOH . M 4 HOH C 31 531 131 HOH HOH . M 4 HOH C 32 532 204 HOH HOH . M 4 HOH C 33 533 110 HOH HOH . M 4 HOH C 34 534 247 HOH HOH . M 4 HOH C 35 535 33 HOH HOH . M 4 HOH C 36 536 55 HOH HOH . M 4 HOH C 37 537 269 HOH HOH . M 4 HOH C 38 538 124 HOH HOH . M 4 HOH C 39 539 76 HOH HOH . M 4 HOH C 40 540 161 HOH HOH . M 4 HOH C 41 541 104 HOH HOH . M 4 HOH C 42 542 70 HOH HOH . M 4 HOH C 43 543 146 HOH HOH . M 4 HOH C 44 544 111 HOH HOH . M 4 HOH C 45 545 158 HOH HOH . M 4 HOH C 46 546 220 HOH HOH . M 4 HOH C 47 547 160 HOH HOH . M 4 HOH C 48 548 242 HOH HOH . M 4 HOH C 49 549 100 HOH HOH . M 4 HOH C 50 550 167 HOH HOH . M 4 HOH C 51 551 304 HOH HOH . M 4 HOH C 52 552 227 HOH HOH . M 4 HOH C 53 553 203 HOH HOH . M 4 HOH C 54 554 308 HOH HOH . M 4 HOH C 55 555 301 HOH HOH . M 4 HOH C 56 556 73 HOH HOH . M 4 HOH C 57 557 172 HOH HOH . M 4 HOH C 58 558 268 HOH HOH . M 4 HOH C 59 559 221 HOH HOH . M 4 HOH C 60 560 277 HOH HOH . M 4 HOH C 61 561 314 HOH HOH . M 4 HOH C 62 562 184 HOH HOH . M 4 HOH C 63 563 122 HOH HOH . M 4 HOH C 64 564 152 HOH HOH . N 4 HOH D 1 701 136 HOH HOH . N 4 HOH D 2 702 164 HOH HOH . N 4 HOH D 3 703 14 HOH HOH . N 4 HOH D 4 704 54 HOH HOH . N 4 HOH D 5 705 3 HOH HOH . N 4 HOH D 6 706 94 HOH HOH . N 4 HOH D 7 707 113 HOH HOH . N 4 HOH D 8 708 58 HOH HOH . N 4 HOH D 9 709 145 HOH HOH . N 4 HOH D 10 710 44 HOH HOH . N 4 HOH D 11 711 257 HOH HOH . N 4 HOH D 12 712 36 HOH HOH . N 4 HOH D 13 713 57 HOH HOH . N 4 HOH D 14 714 71 HOH HOH . N 4 HOH D 15 715 168 HOH HOH . N 4 HOH D 16 716 156 HOH HOH . N 4 HOH D 17 717 4 HOH HOH . N 4 HOH D 18 718 34 HOH HOH . N 4 HOH D 19 719 11 HOH HOH . N 4 HOH D 20 720 95 HOH HOH . N 4 HOH D 21 721 6 HOH HOH . N 4 HOH D 22 722 151 HOH HOH . N 4 HOH D 23 723 251 HOH HOH . N 4 HOH D 24 724 35 HOH HOH . N 4 HOH D 25 725 75 HOH HOH . N 4 HOH D 26 726 27 HOH HOH . N 4 HOH D 27 727 59 HOH HOH . N 4 HOH D 28 728 252 HOH HOH . N 4 HOH D 29 729 186 HOH HOH . N 4 HOH D 30 730 52 HOH HOH . N 4 HOH D 31 731 20 HOH HOH . N 4 HOH D 32 732 295 HOH HOH . N 4 HOH D 33 733 98 HOH HOH . N 4 HOH D 34 734 193 HOH HOH . N 4 HOH D 35 735 238 HOH HOH . N 4 HOH D 36 736 155 HOH HOH . N 4 HOH D 37 737 260 HOH HOH . N 4 HOH D 38 738 175 HOH HOH . N 4 HOH D 39 739 114 HOH HOH . N 4 HOH D 40 740 121 HOH HOH . N 4 HOH D 41 741 103 HOH HOH . N 4 HOH D 42 742 84 HOH HOH . N 4 HOH D 43 743 263 HOH HOH . N 4 HOH D 44 744 191 HOH HOH . N 4 HOH D 45 745 41 HOH HOH . N 4 HOH D 46 746 290 HOH HOH . N 4 HOH D 47 747 154 HOH HOH . N 4 HOH D 48 748 195 HOH HOH . N 4 HOH D 49 749 230 HOH HOH . N 4 HOH D 50 750 211 HOH HOH . N 4 HOH D 51 751 312 HOH HOH . N 4 HOH D 52 752 120 HOH HOH . N 4 HOH D 53 753 119 HOH HOH . N 4 HOH D 54 754 24 HOH HOH . N 4 HOH D 55 755 237 HOH HOH . N 4 HOH D 56 756 147 HOH HOH . N 4 HOH D 57 757 47 HOH HOH . N 4 HOH D 58 758 258 HOH HOH . N 4 HOH D 59 759 209 HOH HOH . N 4 HOH D 60 760 176 HOH HOH . N 4 HOH D 61 761 79 HOH HOH . N 4 HOH D 62 762 129 HOH HOH . N 4 HOH D 63 763 196 HOH HOH . N 4 HOH D 64 764 218 HOH HOH . N 4 HOH D 65 765 285 HOH HOH . N 4 HOH D 66 766 296 HOH HOH . N 4 HOH D 67 767 125 HOH HOH . N 4 HOH D 68 768 140 HOH HOH . N 4 HOH D 69 769 225 HOH HOH . N 4 HOH D 70 770 232 HOH HOH . N 4 HOH D 71 771 101 HOH HOH . N 4 HOH D 72 772 62 HOH HOH . N 4 HOH D 73 773 134 HOH HOH . N 4 HOH D 74 774 293 HOH HOH . N 4 HOH D 75 775 197 HOH HOH . N 4 HOH D 76 776 259 HOH HOH . N 4 HOH D 77 777 217 HOH HOH . N 4 HOH D 78 778 297 HOH HOH . N 4 HOH D 79 779 299 HOH HOH . N 4 HOH D 80 780 219 HOH HOH . N 4 HOH D 81 781 234 HOH HOH . N 4 HOH D 82 782 267 HOH HOH . N 4 HOH D 83 783 311 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . I 3 55.387 9.95 15.637 0.7 68.78 ? C PYR 402 C 1 HETATM 2 O O PYR . . . I 3 54.977 8.89 16.066 0.7 66.41 ? O PYR 402 C 1 HETATM 3 O OXT PYR . . . I 3 55.199 11.01 16.201 0.7 65.37 ? OXT PYR 402 C 1 HETATM 4 C CA PYR . . . I 3 56.059 9.934 14.556 0.7 77.76 ? CA PYR 402 C 1 HETATM 5 O O3 PYR . . . I 3 57.117 9.334 14.547 0.7 80.85 ? O3 PYR 402 C 1 HETATM 6 C CB PYR . . . I 3 55.609 10.6 13.291 0.7 82.67 ? CB PYR 402 C 1 HETATM 7 H HB1 PYR . . . I 3 54.672 10.409 13.139 0.7 99.08 ? HB1 PYR 402 C 1 HETATM 8 H HB2 PYR . . . I 3 55.734 11.558 13.366 0.7 99.08 ? HB2 PYR 402 C 1 HETATM 9 H HB3 PYR . . . I 3 56.131 10.265 12.546 0.7 99.08 ? HB3 PYR 402 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 9 #