data_6K1S
#
_model_server_result.job_id            nDjHSup6Lt8FFZZocB606A 
_model_server_result.datetime_utc      '2025-07-07 22:14:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k1s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":700}' 
#
_entry.id    6K1S 
#
_exptl.entry_id    6K1S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              418.831 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[[7-[(2~{R},3~{R},4~{S},5~{R})-5-[(~{R})-(4-chlorophenyl)-oxidanyl-methyl]-3,4-bis(oxidanyl)oxolan-2-yl]pyrrolo[2,3-d]pyrimidin-4-yl]amino]ethanal 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K1S 
_cell.length_a            102.639 
_cell.length_b            138.724 
_cell.length_c            178.022 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K1S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 216 B CYS 208 1_555 B SG CYS 255 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
covale ? covale1 A SG CYS 457 A CYS 449 1_555 C CBB CUX . A CUX 700 1_555 A ? ? ? ? ? ? ? ? ? ? ? 1.647 ? 
#
_chem_comp.formula           'C19 H19 Cl N4 O5' 
_chem_comp.formula_weight    418.831 
_chem_comp.id                CUX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[[7-[(2~{R},3~{R},4~{S},5~{R})-5-[(~{R})-(4-chlorophenyl)-oxidanyl-methyl]-3,4-bis(oxidanyl)oxolan-2-yl]pyrrolo[2,3-d]pyrimidin-4-yl]amino]ethanal 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAS CAR CUX sing 70 n n 
CLA CAW CUX sing 71 n n 
CAW CAV CUX doub 72 n y 
CAW CAX CUX sing 73 n y 
CAV CAU CUX sing 74 n y 
CAX CAY CUX doub 75 n y 
CAU CAT CUX doub 76 n y 
CAY CAT CUX sing 77 n y 
CAT CAR CUX sing 78 n n 
CAR CAM CUX sing 79 n n 
CBB CBA CUX sing 80 n n 
OAL CAM CUX sing 81 n n 
OAL CAK CUX sing 82 n n 
CAM CAN CUX sing 83 n n 
CBA NAA CUX sing 84 n n 
CAH CAI CUX doub 85 n y 
CAH NAG CUX sing 86 n y 
CAI C5 CUX sing 87 n y 
NAG CAK CUX sing 88 n n 
NAG C4 CUX sing 89 n y 
CAN CAP CUX sing 90 n n 
CAN OAO CUX sing 91 n n 
CAK CAP CUX sing 92 n n 
C5 C4 CUX doub 93 n y 
C5 C6 CUX sing 94 n y 
NAA C6 CUX sing 95 n n 
C4 N3 CUX sing 96 n y 
C6 N1 CUX doub 97 n y 
CAP OAQ CUX sing 98 n n 
N3 C2 CUX doub 99 n y 
N1 C2 CUX sing 100 n y 
CBB H1 CUX sing 101 n n 
CBA H4 CUX sing 102 n n 
C2 H5 CUX sing 103 n n 
CAI H6 CUX sing 104 n n 
CAH H7 CUX sing 105 n n 
CAK H8 CUX sing 106 n n 
CAP H9 CUX sing 107 n n 
OAQ H10 CUX sing 108 n n 
CAN H11 CUX sing 109 n n 
OAO H12 CUX sing 110 n n 
CAM H13 CUX sing 111 n n 
CAR H14 CUX sing 112 n n 
OAS H15 CUX sing 113 n n 
CAU H16 CUX sing 114 n n 
CAV H17 CUX sing 115 n n 
CAX H18 CUX sing 116 n n 
CAY H19 CUX sing 117 n n 
CBA H20 CUX sing 118 n n 
NAA H21 CUX sing 119 n n 
CBB O5 CUX doub 120 n n 
#
_atom_sites.entry_id                     6K1S 
_atom_sites.fract_transf_matrix[1][1]    0.009743 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007209 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005617 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CUX A 1 700 700 CUX CUX . 
D 4 DMS A 1 701 701 DMS DMS . 
E 5 EDO A 1 702 702 EDO EDO . 
F 5 EDO A 1 703 703 EDO EDO . 
G 5 EDO A 1 704 704 EDO EDO . 
H 5 EDO A 1 705 705 EDO EDO . 
I 5 EDO A 1 706 706 EDO EDO . 
J 5 EDO A 1 707 707 EDO EDO . 
K 5 EDO B 1 401 401 EDO EDO . 
L 6 HOH A 1 801 801 HOH HOH . 
L 6 HOH A 2 802 802 HOH HOH . 
L 6 HOH A 3 803 803 HOH HOH . 
L 6 HOH A 4 804 804 HOH HOH . 
L 6 HOH A 5 805 805 HOH HOH . 
L 6 HOH A 6 806 806 HOH HOH . 
L 6 HOH A 7 807 807 HOH HOH . 
L 6 HOH A 8 808 808 HOH HOH . 
L 6 HOH A 9 809 809 HOH HOH . 
L 6 HOH A 10 810 810 HOH HOH . 
L 6 HOH A 11 811 811 HOH HOH . 
L 6 HOH A 12 812 812 HOH HOH . 
L 6 HOH A 13 813 813 HOH HOH . 
L 6 HOH A 14 814 814 HOH HOH . 
L 6 HOH A 15 815 815 HOH HOH . 
L 6 HOH A 16 816 816 HOH HOH . 
L 6 HOH A 17 817 817 HOH HOH . 
L 6 HOH A 18 818 818 HOH HOH . 
L 6 HOH A 19 819 819 HOH HOH . 
L 6 HOH A 20 820 820 HOH HOH . 
L 6 HOH A 21 821 821 HOH HOH . 
L 6 HOH A 22 822 822 HOH HOH . 
L 6 HOH A 23 823 823 HOH HOH . 
L 6 HOH A 24 824 824 HOH HOH . 
L 6 HOH A 25 825 825 HOH HOH . 
L 6 HOH A 26 826 826 HOH HOH . 
L 6 HOH A 27 827 827 HOH HOH . 
L 6 HOH A 28 828 828 HOH HOH . 
L 6 HOH A 29 829 829 HOH HOH . 
L 6 HOH A 30 830 830 HOH HOH . 
L 6 HOH A 31 831 831 HOH HOH . 
L 6 HOH A 32 832 832 HOH HOH . 
L 6 HOH A 33 833 833 HOH HOH . 
L 6 HOH A 34 834 834 HOH HOH . 
L 6 HOH A 35 835 835 HOH HOH . 
L 6 HOH A 36 836 836 HOH HOH . 
L 6 HOH A 37 837 837 HOH HOH . 
L 6 HOH A 38 838 838 HOH HOH . 
L 6 HOH A 39 839 839 HOH HOH . 
L 6 HOH A 40 840 840 HOH HOH . 
L 6 HOH A 41 841 841 HOH HOH . 
L 6 HOH A 42 842 842 HOH HOH . 
L 6 HOH A 43 843 843 HOH HOH . 
L 6 HOH A 44 844 844 HOH HOH . 
L 6 HOH A 45 845 845 HOH HOH . 
L 6 HOH A 46 846 846 HOH HOH . 
L 6 HOH A 47 847 847 HOH HOH . 
L 6 HOH A 48 848 848 HOH HOH . 
L 6 HOH A 49 849 849 HOH HOH . 
L 6 HOH A 50 850 850 HOH HOH . 
L 6 HOH A 51 851 851 HOH HOH . 
L 6 HOH A 52 852 852 HOH HOH . 
L 6 HOH A 53 853 853 HOH HOH . 
L 6 HOH A 54 854 854 HOH HOH . 
L 6 HOH A 55 855 855 HOH HOH . 
L 6 HOH A 56 856 856 HOH HOH . 
L 6 HOH A 57 857 857 HOH HOH . 
L 6 HOH A 58 858 858 HOH HOH . 
L 6 HOH A 59 859 859 HOH HOH . 
L 6 HOH A 60 860 860 HOH HOH . 
L 6 HOH A 61 861 861 HOH HOH . 
L 6 HOH A 62 862 862 HOH HOH . 
L 6 HOH A 63 863 863 HOH HOH . 
L 6 HOH A 64 864 864 HOH HOH . 
L 6 HOH A 65 865 865 HOH HOH . 
L 6 HOH A 66 866 866 HOH HOH . 
L 6 HOH A 67 867 867 HOH HOH . 
L 6 HOH A 68 868 868 HOH HOH . 
L 6 HOH A 69 869 869 HOH HOH . 
L 6 HOH A 70 870 870 HOH HOH . 
L 6 HOH A 71 871 871 HOH HOH . 
L 6 HOH A 72 872 872 HOH HOH . 
L 6 HOH A 73 873 873 HOH HOH . 
L 6 HOH A 74 874 874 HOH HOH . 
L 6 HOH A 75 875 875 HOH HOH . 
L 6 HOH A 76 876 876 HOH HOH . 
L 6 HOH A 77 877 877 HOH HOH . 
L 6 HOH A 78 878 878 HOH HOH . 
L 6 HOH A 79 879 879 HOH HOH . 
L 6 HOH A 80 880 880 HOH HOH . 
L 6 HOH A 81 881 881 HOH HOH . 
L 6 HOH A 82 882 882 HOH HOH . 
L 6 HOH A 83 883 883 HOH HOH . 
M 6 HOH B 1 501 501 HOH HOH . 
M 6 HOH B 2 502 502 HOH HOH . 
M 6 HOH B 3 503 503 HOH HOH . 
M 6 HOH B 4 504 504 HOH HOH . 
M 6 HOH B 5 505 505 HOH HOH . 
M 6 HOH B 6 506 506 HOH HOH . 
M 6 HOH B 7 507 507 HOH HOH . 
M 6 HOH B 8 508 508 HOH HOH . 
M 6 HOH B 9 509 509 HOH HOH . 
M 6 HOH B 10 510 510 HOH HOH . 
M 6 HOH B 11 511 511 HOH HOH . 
M 6 HOH B 12 512 512 HOH HOH . 
M 6 HOH B 13 513 513 HOH HOH . 
M 6 HOH B 14 514 514 HOH HOH . 
M 6 HOH B 15 515 515 HOH HOH . 
M 6 HOH B 16 516 516 HOH HOH . 
M 6 HOH B 17 517 517 HOH HOH . 
M 6 HOH B 18 518 518 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 CUX . . . C 3 -14.915 -102.555 -3.26 1 51.89 ? C4 CUX 700 A 1 
HETATM 2 C C5 CUX . . . C 3 -13.614 -102.448 -3.554 1 53.05 ? C5 CUX 700 A 1 
HETATM 3 C C6 CUX . . . C 3 -12.773 -103.438 -3.167 1 57.3 ? C6 CUX 700 A 1 
HETATM 4 N N1 CUX . . . C 3 -13.205 -104.471 -2.428 1 55.86 ? N1 CUX 700 A 1 
HETATM 5 N N3 CUX . . . C 3 -15.393 -103.575 -2.542 1 54.14 ? N3 CUX 700 A 1 
HETATM 6 C CBB CUX . . . C 3 -11.542 -102.983 -5.946 1 69.83 ? CBB CUX 700 A 1 
HETATM 7 C CBA CUX . . . C 3 -10.841 -103.136 -4.588 1 70.13 ? CBA CUX 700 A 1 
HETATM 8 N NAA CUX . . . C 3 -11.453 -103.345 -3.398 1 63.24 ? NAA CUX 700 A 1 
HETATM 9 C C2 CUX . . . C 3 -14.551 -104.588 -2.093 1 55.42 ? C2 CUX 700 A 1 
HETATM 10 C CAI CUX . . . C 3 -13.466 -101.315 -4.263 1 49.99 ? CAI CUX 700 A 1 
HETATM 11 C CAH CUX . . . C 3 -14.651 -100.751 -4.403 1 51.71 ? CAH CUX 700 A 1 
HETATM 12 N NAG CUX . . . C 3 -15.547 -101.514 -3.769 1 52.82 ? NAG CUX 700 A 1 
HETATM 13 C CAK CUX . . . C 3 -16.991 -101.285 -3.621 1 49.79 ? CAK CUX 700 A 1 
HETATM 14 O OAL CUX . . . C 3 -17.472 -101.261 -4.939 1 51.12 ? OAL CUX 700 A 1 
HETATM 15 C CAP CUX . . . C 3 -17.275 -99.894 -3.139 1 50.1 ? CAP CUX 700 A 1 
HETATM 16 O OAQ CUX . . . C 3 -17.213 -99.805 -1.711 1 53.28 ? OAQ CUX 700 A 1 
HETATM 17 C CAN CUX . . . C 3 -18.678 -99.655 -3.654 1 51.91 ? CAN CUX 700 A 1 
HETATM 18 O OAO CUX . . . C 3 -19.691 -100.041 -2.696 1 49.94 ? OAO CUX 700 A 1 
HETATM 19 C CAM CUX . . . C 3 -18.733 -100.573 -4.871 1 52.54 ? CAM CUX 700 A 1 
HETATM 20 C CAR CUX . . . C 3 -18.945 -99.782 -6.184 1 55.2 ? CAR CUX 700 A 1 
HETATM 21 O OAS CUX . . . C 3 -17.866 -98.845 -6.367 1 54.36 ? OAS CUX 700 A 1 
HETATM 22 C CAT CUX . . . C 3 -20.253 -99.207 -6.224 1 57.46 ? CAT CUX 700 A 1 
HETATM 23 C CAU CUX . . . C 3 -21.356 -100.077 -6.259 1 56.7 ? CAU CUX 700 A 1 
HETATM 24 C CAV CUX . . . C 3 -22.659 -99.611 -6.299 1 55.77 ? CAV CUX 700 A 1 
HETATM 25 C CAW CUX . . . C 3 -22.891 -98.254 -6.311 1 58.89 ? CAW CUX 700 A 1 
HETATM 26 CL CLA CUX . . . C 3 -24.502 -97.702 -6.366 1 70.08 ? CLA CUX 700 A 1 
HETATM 27 C CAX CUX . . . C 3 -21.819 -97.359 -6.273 1 59.84 ? CAX CUX 700 A 1 
HETATM 28 C CAY CUX . . . C 3 -20.498 -97.828 -6.236 1 58.54 ? CAY CUX 700 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           28 
#