data_6K23 # _model_server_result.job_id q2FqYvwLOb2KQaqeb3l2Rg _model_server_result.datetime_utc '2024-12-19 17:47:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 6K23 # _exptl.entry_id 6K23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K23 _cell.length_a 83.183 _cell.length_b 83.183 _cell.length_c 174.24 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 6K23 _atom_sites.fract_transf_matrix[1][1] 0.012022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 301 1 NAD NAD . F 2 NAD B 1 301 3 NAD NAD . G 2 NAD C 1 301 5 NAD NAD . H 2 NAD D 1 301 7 NAD NAD . I 3 HOH A 1 401 69 HOH HOH . I 3 HOH A 2 402 10 HOH HOH . J 3 HOH B 1 401 44 HOH HOH . J 3 HOH B 2 402 52 HOH HOH . K 3 HOH C 1 401 23 HOH HOH . K 3 HOH C 2 402 11 HOH HOH . L 3 HOH D 1 401 10 HOH HOH . L 3 HOH D 2 402 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 -33.744 39.797 13.337 1 104.37 ? PA NAD 301 A 1 HETATM 2 O O1A NAD . . . E 2 -32.974 40.985 13.816 1 103.35 ? O1A NAD 301 A 1 HETATM 3 O O2A NAD . . . E 2 -34.939 39.34 14.108 1 104.75 ? O2A NAD 301 A 1 HETATM 4 O O5B NAD . . . E 2 -34.161 40.064 11.818 1 99.31 ? O5B NAD 301 A 1 HETATM 5 C C5B NAD . . . E 2 -35.132 39.213 11.16 1 102.08 ? C5B NAD 301 A 1 HETATM 6 C C4B NAD . . . E 2 -36.03 40.103 10.344 1 101.76 ? C4B NAD 301 A 1 HETATM 7 O O4B NAD . . . E 2 -37.083 39.317 9.714 1 98.77 ? O4B NAD 301 A 1 HETATM 8 C C3B NAD . . . E 2 -36.741 41.18 11.183 1 105.62 ? C3B NAD 301 A 1 HETATM 9 O O3B NAD . . . E 2 -36.676 42.464 10.57 1 91.05 ? O3B NAD 301 A 1 HETATM 10 C C2B NAD . . . E 2 -38.163 40.624 11.255 1 105.13 ? C2B NAD 301 A 1 HETATM 11 O O2B NAD . . . E 2 -39.162 41.577 11.547 1 98.08 ? O2B NAD 301 A 1 HETATM 12 C C1B NAD . . . E 2 -38.254 40.092 9.834 1 107.85 ? C1B NAD 301 A 1 HETATM 13 N N9A NAD . . . E 2 -39.499 39.367 9.593 1 106.69 ? N9A NAD 301 A 1 HETATM 14 C C8A NAD . . . E 2 -40.105 38.432 10.4 1 107.86 ? C8A NAD 301 A 1 HETATM 15 N N7A NAD . . . E 2 -41.268 38.033 9.94 1 109.64 ? N7A NAD 301 A 1 HETATM 16 C C5A NAD . . . E 2 -41.463 38.781 8.783 1 97.79 ? C5A NAD 301 A 1 HETATM 17 C C6A NAD . . . E 2 -42.518 38.828 7.846 1 95.42 ? C6A NAD 301 A 1 HETATM 18 N N6A NAD . . . E 2 -43.616 38.085 7.955 1 94.83 ? N6A NAD 301 A 1 HETATM 19 N N1A NAD . . . E 2 -42.408 39.698 6.806 1 95.28 ? N1A NAD 301 A 1 HETATM 20 C C2A NAD . . . E 2 -41.294 40.436 6.709 1 93.58 ? C2A NAD 301 A 1 HETATM 21 N N3A NAD . . . E 2 -40.241 40.478 7.533 1 89.99 ? N3A NAD 301 A 1 HETATM 22 C C4A NAD . . . E 2 -40.387 39.616 8.566 1 95.58 ? C4A NAD 301 A 1 HETATM 23 O O3 NAD . . . E 2 -32.722 38.565 13.159 1 103.69 ? O3 NAD 301 A 1 HETATM 24 P PN NAD . . . E 2 -31.38 38.521 12.274 1 98.76 ? PN NAD 301 A 1 HETATM 25 O O1N NAD . . . E 2 -30.27 37.934 13.083 1 98.08 ? O1N NAD 301 A 1 HETATM 26 O O2N NAD . . . E 2 -31.158 39.867 11.658 1 97.79 ? O2N NAD 301 A 1 HETATM 27 O O5D NAD . . . E 2 -31.824 37.477 11.136 1 96.67 ? O5D NAD 301 A 1 HETATM 28 C C5D NAD . . . E 2 -31.665 37.845 9.731 1 105.92 ? C5D NAD 301 A 1 HETATM 29 C C4D NAD . . . E 2 -31.696 36.623 8.838 1 106.11 ? C4D NAD 301 A 1 HETATM 30 O O4D NAD . . . E 2 -30.441 35.91 8.933 1 98.79 ? O4D NAD 301 A 1 HETATM 31 C C3D NAD . . . E 2 -32.795 35.589 9.137 1 102.96 ? C3D NAD 301 A 1 HETATM 32 O O3D NAD . . . E 2 -33.288 35.049 7.917 1 104.02 ? O3D NAD 301 A 1 HETATM 33 C C2D NAD . . . E 2 -32.061 34.546 9.988 1 95.17 ? C2D NAD 301 A 1 HETATM 34 O O2D NAD . . . E 2 -32.673 33.269 9.918 1 97.52 ? O2D NAD 301 A 1 HETATM 35 C C1D NAD . . . E 2 -30.686 34.556 9.32 1 94.18 ? C1D NAD 301 A 1 HETATM 36 N N1N NAD . . . E 2 -29.544 34.11 10.175 1 93.31 ? N1N NAD 301 A 1 HETATM 37 C C2N NAD . . . E 2 -29.476 34.396 11.511 1 91.72 ? C2N NAD 301 A 1 HETATM 38 C C3N NAD . . . E 2 -28.362 34.01 12.239 1 92.7 ? C3N NAD 301 A 1 HETATM 39 C C7N NAD . . . E 2 -28.29 34.343 13.699 1 92.72 ? C7N NAD 301 A 1 HETATM 40 O O7N NAD . . . E 2 -27.906 33.484 14.486 1 100.03 ? O7N NAD 301 A 1 HETATM 41 N N7N NAD . . . E 2 -28.636 35.568 14.067 1 95.14 ? N7N NAD 301 A 1 HETATM 42 C C4N NAD . . . E 2 -27.33 33.319 11.621 1 101.12 ? C4N NAD 301 A 1 HETATM 43 C C5N NAD . . . E 2 -27.422 33.016 10.287 1 98.02 ? C5N NAD 301 A 1 HETATM 44 C C6N NAD . . . E 2 -28.523 33.437 9.581 1 100.58 ? C6N NAD 301 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 389 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #