data_6K23
#
_model_server_result.job_id            MtvWOgbm_j1fgRpKszGpJA 
_model_server_result.datetime_utc      '2024-12-19 18:29:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k23 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":301}' 
#
_entry.id    6K23 
#
_exptl.entry_id    6K23 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K23 
_cell.length_a            83.183 
_cell.length_b            83.183 
_cell.length_c            174.24 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K23 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     6K23 
_atom_sites.fract_transf_matrix[1][1]    0.012022 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012022 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 301 1 NAD NAD . 
F 2 NAD B 1 301 3 NAD NAD . 
G 2 NAD C 1 301 5 NAD NAD . 
H 2 NAD D 1 301 7 NAD NAD . 
I 3 HOH A 1 401 69 HOH HOH . 
I 3 HOH A 2 402 10 HOH HOH . 
J 3 HOH B 1 401 44 HOH HOH . 
J 3 HOH B 2 402 52 HOH HOH . 
K 3 HOH C 1 401 23 HOH HOH . 
K 3 HOH C 2 402 11 HOH HOH . 
L 3 HOH D 1 401 10 HOH HOH . 
L 3 HOH D 2 402 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . F 2 0.542 30.095 -14.057 1 132.84 ? PA NAD 301 B 1 
HETATM 2 O O1A NAD . . . F 2 0.885 31.456 -14.574 1 128.35 ? O1A NAD 301 B 1 
HETATM 3 O O2A NAD . . . F 2 1.124 28.901 -14.741 1 138.71 ? O2A NAD 301 B 1 
HETATM 4 O O5B NAD . . . F 2 0.834 30.031 -12.478 1 123.37 ? O5B NAD 301 B 1 
HETATM 5 C C5B NAD . . . F 2 1.459 28.897 -11.819 1 115.33 ? C5B NAD 301 B 1 
HETATM 6 C C4B NAD . . . F 2 2.723 29.401 -11.171 1 115.9 ? C4B NAD 301 B 1 
HETATM 7 O O4B NAD . . . F 2 3.418 28.344 -10.452 1 114.76 ? O4B NAD 301 B 1 
HETATM 8 C C3B NAD . . . F 2 3.748 29.965 -12.167 1 116.18 ? C3B NAD 301 B 1 
HETATM 9 O O3B NAD . . . F 2 3.879 31.371 -11.992 1 107.92 ? O3B NAD 301 B 1 
HETATM 10 C C2B NAD . . . F 2 5.036 29.184 -11.869 1 115.99 ? C2B NAD 301 B 1 
HETATM 11 O O2B NAD . . . F 2 6.219 29.95 -11.934 1 112.67 ? O2B NAD 301 B 1 
HETATM 12 C C1B NAD . . . F 2 4.785 28.692 -10.451 1 114.16 ? C1B NAD 301 B 1 
HETATM 13 N N9A NAD . . . F 2 5.645 27.561 -10.104 1 117.75 ? N9A NAD 301 B 1 
HETATM 14 C C8A NAD . . . F 2 5.719 26.35 -10.751 1 127.62 ? C8A NAD 301 B 1 
HETATM 15 N N7A NAD . . . F 2 6.614 25.538 -10.243 1 130.87 ? N7A NAD 301 B 1 
HETATM 16 C C5A NAD . . . F 2 7.189 26.26 -9.2 1 124.59 ? C5A NAD 301 B 1 
HETATM 17 C C6A NAD . . . F 2 8.207 25.948 -8.268 1 115.4 ? C6A NAD 301 B 1 
HETATM 18 N N6A NAD . . . F 2 8.851 24.783 -8.24 1 116.91 ? N6A NAD 301 B 1 
HETATM 19 N N1A NAD . . . F 2 8.543 26.898 -7.356 1 113.84 ? N1A NAD 301 B 1 
HETATM 20 C C2A NAD . . . F 2 7.89 28.068 -7.382 1 113.41 ? C2A NAD 301 B 1 
HETATM 21 N N3A NAD . . . F 2 6.918 28.472 -8.208 1 115.6 ? N3A NAD 301 B 1 
HETATM 22 C C4A NAD . . . F 2 6.606 27.513 -9.111 1 119.61 ? C4A NAD 301 B 1 
HETATM 23 O O3 NAD . . . F 2 -1.054 29.954 -14.039 1 122.39 ? O3 NAD 301 B 1 
HETATM 24 P PN NAD . . . F 2 -2.133 30.529 -13 1 118.1 ? PN NAD 301 B 1 
HETATM 25 O O1N NAD . . . F 2 -3.482 30.246 -13.574 1 113.42 ? O1N NAD 301 B 1 
HETATM 26 O O2N NAD . . . F 2 -1.78 31.937 -12.621 1 109.81 ? O2N NAD 301 B 1 
HETATM 27 O O5D NAD . . . F 2 -1.871 29.539 -11.764 1 101.57 ? O5D NAD 301 B 1 
HETATM 28 C C5D NAD . . . F 2 -1.885 30.008 -10.396 1 97.58 ? C5D NAD 301 B 1 
HETATM 29 C C4D NAD . . . F 2 -2.697 29.04 -9.576 1 97.04 ? C4D NAD 301 B 1 
HETATM 30 O O4D NAD . . . F 2 -4.086 29.213 -9.929 1 95.48 ? O4D NAD 301 B 1 
HETATM 31 C C3D NAD . . . F 2 -2.366 27.552 -9.793 1 97.2 ? C3D NAD 301 B 1 
HETATM 32 O O3D NAD . . . F 2 -2.073 26.897 -8.566 1 96.86 ? O3D NAD 301 B 1 
HETATM 33 C C2D NAD . . . F 2 -3.628 27.015 -10.482 1 96.11 ? C2D NAD 301 B 1 
HETATM 34 O O2D NAD . . . F 2 -3.935 25.68 -10.122 1 95.82 ? O2D NAD 301 B 1 
HETATM 35 C C1D NAD . . . F 2 -4.708 27.949 -9.962 1 98.19 ? C1D NAD 301 B 1 
HETATM 36 N N1N NAD . . . F 2 -5.929 28.004 -10.822 1 100.68 ? N1N NAD 301 B 1 
HETATM 37 C C2N NAD . . . F 2 -5.885 28.422 -12.139 1 98.91 ? C2N NAD 301 B 1 
HETATM 38 C C3N NAD . . . F 2 -7.053 28.453 -12.911 1 96.22 ? C3N NAD 301 B 1 
HETATM 39 C C7N NAD . . . F 2 -7.02 28.908 -14.351 1 105 ? C7N NAD 301 B 1 
HETATM 40 O O7N NAD . . . F 2 -8.064 29.271 -14.89 1 108.13 ? O7N NAD 301 B 1 
HETATM 41 N N7N NAD . . . F 2 -5.853 28.902 -14.985 1 105.11 ? N7N NAD 301 B 1 
HETATM 42 C C4N NAD . . . F 2 -8.258 28.066 -12.325 1 91.95 ? C4N NAD 301 B 1 
HETATM 43 C C5N NAD . . . F 2 -8.275 27.65 -11.008 1 100.03 ? C5N NAD 301 B 1 
HETATM 44 C C6N NAD . . . F 2 -7.107 27.63 -10.281 1 102.06 ? C6N NAD 301 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           217 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#