data_6K23
#
_model_server_result.job_id            6vQheLSy77TgYvRp9Om-5Q 
_model_server_result.datetime_utc      '2024-10-30 19:26:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k23 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    6K23 
#
_exptl.entry_id    6K23 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K23 
_cell.length_a            83.183 
_cell.length_b            83.183 
_cell.length_c            174.24 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K23 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     6K23 
_atom_sites.fract_transf_matrix[1][1]    0.012022 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012022 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 301 1 NAD NAD . 
F 2 NAD B 1 301 3 NAD NAD . 
G 2 NAD C 1 301 5 NAD NAD . 
H 2 NAD D 1 301 7 NAD NAD . 
I 3 HOH A 1 401 69 HOH HOH . 
I 3 HOH A 2 402 10 HOH HOH . 
J 3 HOH B 1 401 44 HOH HOH . 
J 3 HOH B 2 402 52 HOH HOH . 
K 3 HOH C 1 401 23 HOH HOH . 
K 3 HOH C 2 402 11 HOH HOH . 
L 3 HOH D 1 401 10 HOH HOH . 
L 3 HOH D 2 402 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . H 2 -4.747 -1.324 9.743 1 93.6 ? PA NAD 301 D 1 
HETATM 2 O O1A NAD . . . H 2 -5.293 -2.638 10.197 1 98.48 ? O1A NAD 301 D 1 
HETATM 3 O O2A NAD . . . H 2 -3.416 -0.861 10.241 1 92.62 ? O2A NAD 301 D 1 
HETATM 4 O O5B NAD . . . H 2 -4.777 -1.315 8.149 1 101.01 ? O5B NAD 301 D 1 
HETATM 5 C C5B NAD . . . H 2 -3.866 -0.522 7.365 1 106.5 ? C5B NAD 301 D 1 
HETATM 6 C C4B NAD . . . H 2 -3.203 -1.469 6.405 1 105.95 ? C4B NAD 301 D 1 
HETATM 7 O O4B NAD . . . H 2 -2.207 -0.767 5.614 1 109.69 ? O4B NAD 301 D 1 
HETATM 8 C C3B NAD . . . H 2 -2.47 -2.622 7.107 1 111.55 ? C3B NAD 301 D 1 
HETATM 9 O O3B NAD . . . H 2 -2.908 -3.891 6.634 1 111.06 ? O3B NAD 301 D 1 
HETATM 10 C C2B NAD . . . H 2 -1.001 -2.387 6.76 1 106.15 ? C2B NAD 301 D 1 
HETATM 11 O O2B NAD . . . H 2 -0.354 -3.635 6.663 1 103.81 ? O2B NAD 301 D 1 
HETATM 12 C C1B NAD . . . H 2 -1.118 -1.642 5.434 1 107.79 ? C1B NAD 301 D 1 
HETATM 13 N N9A NAD . . . H 2 0.097 -0.917 5.063 1 100.83 ? N9A NAD 301 D 1 
HETATM 14 C C8A NAD . . . H 2 0.751 0.067 5.765 1 103.54 ? C8A NAD 301 D 1 
HETATM 15 N N7A NAD . . . H 2 1.848 0.485 5.175 1 103.35 ? N7A NAD 301 D 1 
HETATM 16 C C5A NAD . . . H 2 1.941 -0.276 4.013 1 97.37 ? C5A NAD 301 D 1 
HETATM 17 C C6A NAD . . . H 2 2.886 -0.313 2.956 1 102.59 ? C6A NAD 301 D 1 
HETATM 18 N N6A NAD . . . H 2 3.982 0.445 2.906 1 99.78 ? N6A NAD 301 D 1 
HETATM 19 N N1A NAD . . . H 2 2.67 -1.206 1.95 1 92.8 ? N1A NAD 301 D 1 
HETATM 20 C C2A NAD . . . H 2 1.575 -1.977 2.007 1 92.07 ? C2A NAD 301 D 1 
HETATM 21 N N3A NAD . . . H 2 0.626 -2.03 2.948 1 94.75 ? N3A NAD 301 D 1 
HETATM 22 C C4A NAD . . . H 2 0.867 -1.145 3.94 1 96.08 ? C4A NAD 301 D 1 
HETATM 23 O O3 NAD . . . H 2 -5.862 -0.205 10.011 1 100.75 ? O3 NAD 301 D 1 
HETATM 24 P PN NAD . . . H 2 -7.298 -0.166 9.29 1 96.81 ? PN NAD 301 D 1 
HETATM 25 O O1N NAD . . . H 2 -8.292 0.428 10.227 1 86.54 ? O1N NAD 301 D 1 
HETATM 26 O O2N NAD . . . H 2 -7.599 -1.521 8.723 1 91.19 ? O2N NAD 301 D 1 
HETATM 27 O O5D NAD . . . H 2 -7.008 0.874 8.094 1 86.69 ? O5D NAD 301 D 1 
HETATM 28 C C5D NAD . . . H 2 -7.621 0.59 6.799 1 91.28 ? C5D NAD 301 D 1 
HETATM 29 C C4D NAD . . . H 2 -7.762 1.836 5.953 1 88.64 ? C4D NAD 301 D 1 
HETATM 30 O O4D NAD . . . H 2 -8.994 2.53 6.266 1 77.69 ? O4D NAD 301 D 1 
HETATM 31 C C3D NAD . . . H 2 -6.643 2.874 6.103 1 86.67 ? C3D NAD 301 D 1 
HETATM 32 O O3D NAD . . . H 2 -6.418 3.527 4.862 1 99.39 ? O3D NAD 301 D 1 
HETATM 33 C C2D NAD . . . H 2 -7.227 3.826 7.146 1 81.89 ? C2D NAD 301 D 1 
HETATM 34 O O2D NAD . . . H 2 -6.561 5.076 7.09 1 80.26 ? O2D NAD 301 D 1 
HETATM 35 C C1D NAD . . . H 2 -8.688 3.865 6.685 1 83.47 ? C1D NAD 301 D 1 
HETATM 36 N N1N NAD . . . H 2 -9.683 4.279 7.726 1 87.02 ? N1N NAD 301 D 1 
HETATM 37 C C2N NAD . . . H 2 -9.467 4.079 9.069 1 88.76 ? C2N NAD 301 D 1 
HETATM 38 C C3N NAD . . . H 2 -10.43 4.455 9.993 1 90.57 ? C3N NAD 301 D 1 
HETATM 39 C C7N NAD . . . H 2 -10.188 4.213 11.456 1 79.79 ? C7N NAD 301 D 1 
HETATM 40 O O7N NAD . . . H 2 -10.456 5.098 12.26 1 84.18 ? O7N NAD 301 D 1 
HETATM 41 N N7N NAD . . . H 2 -9.694 3.041 11.811 1 83.97 ? N7N NAD 301 D 1 
HETATM 42 C C4N NAD . . . H 2 -11.602 5.059 9.555 1 100.3 ? C4N NAD 301 D 1 
HETATM 43 C C5N NAD . . . H 2 -11.796 5.277 8.214 1 92.87 ? C5N NAD 301 D 1 
HETATM 44 C C6N NAD . . . H 2 -10.842 4.855 7.319 1 91.04 ? C6N NAD 301 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           391 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#