data_6K2M # _model_server_result.job_id k5em7Kss5bl4sa9b9ICYrA _model_server_result.datetime_utc '2024-11-14 05:36:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 6K2M # _exptl.entry_id 6K2M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K2M _cell.length_a 135.926 _cell.length_b 150.588 _cell.length_c 171.009 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,G,I,L,M 1 1 B,C,F,H,J,K,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 6K2M _atom_sites.fract_transf_matrix[1][1] 0.007357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006641 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005848 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ARG A 1 301 290 ARG ARG . H 2 ARG E 1 301 290 ARG ARG . I 3 HOH A 1 401 421 HOH HOH . I 3 HOH A 2 402 301 HOH HOH . I 3 HOH A 3 403 402 HOH HOH . I 3 HOH A 4 404 401 HOH HOH . I 3 HOH A 5 405 412 HOH HOH . I 3 HOH A 6 406 423 HOH HOH . I 3 HOH A 7 407 406 HOH HOH . I 3 HOH A 8 408 413 HOH HOH . I 3 HOH A 9 409 419 HOH HOH . I 3 HOH A 10 410 405 HOH HOH . I 3 HOH A 11 411 420 HOH HOH . I 3 HOH A 12 412 401 HOH HOH . I 3 HOH A 13 413 407 HOH HOH . I 3 HOH A 14 414 411 HOH HOH . I 3 HOH A 15 415 410 HOH HOH . I 3 HOH A 16 416 409 HOH HOH . J 3 HOH D 1 301 313 HOH HOH . J 3 HOH D 2 302 305 HOH HOH . J 3 HOH D 3 303 323 HOH HOH . J 3 HOH D 4 304 302 HOH HOH . J 3 HOH D 5 305 413 HOH HOH . J 3 HOH D 6 306 403 HOH HOH . J 3 HOH D 7 307 303 HOH HOH . J 3 HOH D 8 308 328 HOH HOH . J 3 HOH D 9 309 324 HOH HOH . J 3 HOH D 10 310 329 HOH HOH . J 3 HOH D 11 311 319 HOH HOH . J 3 HOH D 12 312 318 HOH HOH . J 3 HOH D 13 313 314 HOH HOH . J 3 HOH D 14 314 307 HOH HOH . J 3 HOH D 15 315 332 HOH HOH . J 3 HOH D 16 316 326 HOH HOH . J 3 HOH D 17 317 304 HOH HOH . J 3 HOH D 18 318 327 HOH HOH . J 3 HOH D 19 319 331 HOH HOH . J 3 HOH D 20 320 320 HOH HOH . J 3 HOH D 21 321 310 HOH HOH . J 3 HOH D 22 322 330 HOH HOH . K 3 HOH E 1 401 405 HOH HOH . K 3 HOH E 2 402 411 HOH HOH . K 3 HOH E 3 403 412 HOH HOH . K 3 HOH E 4 404 425 HOH HOH . K 3 HOH E 5 405 301 HOH HOH . K 3 HOH E 6 406 417 HOH HOH . K 3 HOH E 7 407 409 HOH HOH . K 3 HOH E 8 408 415 HOH HOH . L 3 HOH B 1 301 306 HOH HOH . L 3 HOH B 2 302 414 HOH HOH . L 3 HOH B 3 303 404 HOH HOH . L 3 HOH B 4 304 307 HOH HOH . L 3 HOH B 5 305 311 HOH HOH . L 3 HOH B 6 306 309 HOH HOH . L 3 HOH B 7 307 303 HOH HOH . L 3 HOH B 8 308 310 HOH HOH . M 3 HOH C 1 301 303 HOH HOH . M 3 HOH C 2 302 304 HOH HOH . M 3 HOH C 3 303 321 HOH HOH . M 3 HOH C 4 304 306 HOH HOH . M 3 HOH C 5 305 307 HOH HOH . M 3 HOH C 6 306 308 HOH HOH . M 3 HOH C 7 307 305 HOH HOH . M 3 HOH C 8 308 301 HOH HOH . M 3 HOH C 9 309 302 HOH HOH . M 3 HOH C 10 310 307 HOH HOH . N 3 HOH F 1 301 304 HOH HOH . N 3 HOH F 2 302 313 HOH HOH . N 3 HOH F 3 303 301 HOH HOH . N 3 HOH F 4 304 312 HOH HOH . N 3 HOH F 5 305 308 HOH HOH . N 3 HOH F 6 306 306 HOH HOH . N 3 HOH F 7 307 310 HOH HOH . N 3 HOH F 8 308 302 HOH HOH . N 3 HOH F 9 309 305 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . H 2 -0.088 7.103 44.099 1 129.08 ? N ARG 301 E 1 HETATM 2 C CA ARG . . . H 2 -1.488 7.405 44.583 1 147.04 ? CA ARG 301 E 1 HETATM 3 C C ARG . . . H 2 -1.734 8.937 44.573 1 152.78 ? C ARG 301 E 1 HETATM 4 O O ARG . . . H 2 -0.851 9.829 44.445 1 123.34 ? O ARG 301 E 1 HETATM 5 C CB ARG . . . H 2 -1.774 6.674 45.915 1 143.55 ? CB ARG 301 E 1 HETATM 6 C CG ARG . . . H 2 -1.005 7.128 47.158 1 129.31 ? CG ARG 301 E 1 HETATM 7 C CD ARG . . . H 2 0.125 6.215 47.625 1 136.47 ? CD ARG 301 E 1 HETATM 8 N NE ARG . . . H 2 -0.234 4.99 48.355 1 139.52 ? NE ARG 301 E 1 HETATM 9 C CZ ARG . . . H 2 0.627 4.12 48.944 1 137.66 ? CZ ARG 301 E 1 HETATM 10 N NH1 ARG . . . H 2 0.166 3.043 49.559 1 146.73 ? NH1 ARG 301 E 1 HETATM 11 N NH2 ARG . . . H 2 1.936 4.306 48.942 1 113.23 ? NH2 ARG 301 E 1 HETATM 12 O OXT ARG . . . H 2 -2.902 9.385 44.659 1 136.49 ? OXT ARG 301 E 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #