data_6K2S # _model_server_result.job_id 9sIiT9VoLW7Qr7QPK8y-BQ _model_server_result.datetime_utc '2025-07-14 08:06:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 6K2S # _exptl.entry_id 6K2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K2S _cell.length_a 68.28 _cell.length_b 68.28 _cell.length_c 108.23 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 178 A CYS 178 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc1 A O THR 16 A THR 16 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 A O PRO 175 A PRO 175 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc3 A O VAL 177 A VAL 177 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc4 A OD1 ASP 200 A ASP 200 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc5 A OD2 ASP 200 A ASP 200 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc6 A OD1 ASP 260 A ASP 260 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc7 A OD2 ASP 260 A ASP 260 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc8 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc9 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc10 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc11 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc12 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc13 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc14 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc15 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 237 n n N O2 NO3 sing 238 n n N O3 NO3 sing 239 n n # _atom_sites.entry_id 6K2S _atom_sites.fract_transf_matrix[1][1] 0.014646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00924 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1001 1001 CA CA . C 2 CA A 1 1002 1002 CA CA . D 3 NO3 A 1 1003 2001 NO3 NO3 . E 4 HOH A 1 1101 82 HOH HOH . E 4 HOH A 2 1102 140 HOH HOH . E 4 HOH A 3 1103 174 HOH HOH . E 4 HOH A 4 1104 172 HOH HOH . E 4 HOH A 5 1105 69 HOH HOH . E 4 HOH A 6 1106 167 HOH HOH . E 4 HOH A 7 1107 102 HOH HOH . E 4 HOH A 8 1108 64 HOH HOH . E 4 HOH A 9 1109 6 HOH HOH . E 4 HOH A 10 1110 85 HOH HOH . E 4 HOH A 11 1111 187 HOH HOH . E 4 HOH A 12 1112 93 HOH HOH . E 4 HOH A 13 1113 4 HOH HOH . E 4 HOH A 14 1114 87 HOH HOH . E 4 HOH A 15 1115 150 HOH HOH . E 4 HOH A 16 1116 74 HOH HOH . E 4 HOH A 17 1117 66 HOH HOH . E 4 HOH A 18 1118 2 HOH HOH . E 4 HOH A 19 1119 67 HOH HOH . E 4 HOH A 20 1120 8 HOH HOH . E 4 HOH A 21 1121 31 HOH HOH . E 4 HOH A 22 1122 108 HOH HOH . E 4 HOH A 23 1123 1 HOH HOH . E 4 HOH A 24 1124 18 HOH HOH . E 4 HOH A 25 1125 133 HOH HOH . E 4 HOH A 26 1126 199 HOH HOH . E 4 HOH A 27 1127 22 HOH HOH . E 4 HOH A 28 1128 79 HOH HOH . E 4 HOH A 29 1129 86 HOH HOH . E 4 HOH A 30 1130 129 HOH HOH . E 4 HOH A 31 1131 189 HOH HOH . E 4 HOH A 32 1132 13 HOH HOH . E 4 HOH A 33 1133 90 HOH HOH . E 4 HOH A 34 1134 198 HOH HOH . E 4 HOH A 35 1135 76 HOH HOH . E 4 HOH A 36 1136 68 HOH HOH . E 4 HOH A 37 1137 98 HOH HOH . E 4 HOH A 38 1138 14 HOH HOH . E 4 HOH A 39 1139 30 HOH HOH . E 4 HOH A 40 1140 7 HOH HOH . E 4 HOH A 41 1141 9 HOH HOH . E 4 HOH A 42 1142 117 HOH HOH . E 4 HOH A 43 1143 11 HOH HOH . E 4 HOH A 44 1144 36 HOH HOH . E 4 HOH A 45 1145 3 HOH HOH . E 4 HOH A 46 1146 84 HOH HOH . E 4 HOH A 47 1147 115 HOH HOH . E 4 HOH A 48 1148 136 HOH HOH . E 4 HOH A 49 1149 34 HOH HOH . E 4 HOH A 50 1150 107 HOH HOH . E 4 HOH A 51 1151 146 HOH HOH . E 4 HOH A 52 1152 15 HOH HOH . E 4 HOH A 53 1153 24 HOH HOH . E 4 HOH A 54 1154 19 HOH HOH . E 4 HOH A 55 1155 29 HOH HOH . E 4 HOH A 56 1156 10 HOH HOH . E 4 HOH A 57 1157 91 HOH HOH . E 4 HOH A 58 1158 169 HOH HOH . E 4 HOH A 59 1159 124 HOH HOH . E 4 HOH A 60 1160 168 HOH HOH . E 4 HOH A 61 1161 12 HOH HOH . E 4 HOH A 62 1162 175 HOH HOH . E 4 HOH A 63 1163 42 HOH HOH . E 4 HOH A 64 1164 78 HOH HOH . E 4 HOH A 65 1165 119 HOH HOH . E 4 HOH A 66 1166 126 HOH HOH . E 4 HOH A 67 1167 17 HOH HOH . E 4 HOH A 68 1168 16 HOH HOH . E 4 HOH A 69 1169 25 HOH HOH . E 4 HOH A 70 1170 5 HOH HOH . E 4 HOH A 71 1171 131 HOH HOH . E 4 HOH A 72 1172 28 HOH HOH . E 4 HOH A 73 1173 151 HOH HOH . E 4 HOH A 74 1174 158 HOH HOH . E 4 HOH A 75 1175 40 HOH HOH . E 4 HOH A 76 1176 35 HOH HOH . E 4 HOH A 77 1177 135 HOH HOH . E 4 HOH A 78 1178 162 HOH HOH . E 4 HOH A 79 1179 26 HOH HOH . E 4 HOH A 80 1180 170 HOH HOH . E 4 HOH A 81 1181 94 HOH HOH . E 4 HOH A 82 1182 121 HOH HOH . E 4 HOH A 83 1183 176 HOH HOH . E 4 HOH A 84 1184 80 HOH HOH . E 4 HOH A 85 1185 23 HOH HOH . E 4 HOH A 86 1186 92 HOH HOH . E 4 HOH A 87 1187 32 HOH HOH . E 4 HOH A 88 1188 21 HOH HOH . E 4 HOH A 89 1189 99 HOH HOH . E 4 HOH A 90 1190 20 HOH HOH . E 4 HOH A 91 1191 97 HOH HOH . E 4 HOH A 92 1192 39 HOH HOH . E 4 HOH A 93 1193 128 HOH HOH . E 4 HOH A 94 1194 47 HOH HOH . E 4 HOH A 95 1195 116 HOH HOH . E 4 HOH A 96 1196 65 HOH HOH . E 4 HOH A 97 1197 51 HOH HOH . E 4 HOH A 98 1198 48 HOH HOH . E 4 HOH A 99 1199 41 HOH HOH . E 4 HOH A 100 1200 155 HOH HOH . E 4 HOH A 101 1201 38 HOH HOH . E 4 HOH A 102 1202 197 HOH HOH . E 4 HOH A 103 1203 44 HOH HOH . E 4 HOH A 104 1204 49 HOH HOH . E 4 HOH A 105 1205 53 HOH HOH . E 4 HOH A 106 1206 148 HOH HOH . E 4 HOH A 107 1207 54 HOH HOH . E 4 HOH A 108 1208 127 HOH HOH . E 4 HOH A 109 1209 70 HOH HOH . E 4 HOH A 110 1210 37 HOH HOH . E 4 HOH A 111 1211 100 HOH HOH . E 4 HOH A 112 1212 72 HOH HOH . E 4 HOH A 113 1213 71 HOH HOH . E 4 HOH A 114 1214 106 HOH HOH . E 4 HOH A 115 1215 95 HOH HOH . E 4 HOH A 116 1216 27 HOH HOH . E 4 HOH A 117 1217 56 HOH HOH . E 4 HOH A 118 1218 177 HOH HOH . E 4 HOH A 119 1219 33 HOH HOH . E 4 HOH A 120 1220 173 HOH HOH . E 4 HOH A 121 1221 145 HOH HOH . E 4 HOH A 122 1222 154 HOH HOH . E 4 HOH A 123 1223 184 HOH HOH . E 4 HOH A 124 1224 113 HOH HOH . E 4 HOH A 125 1225 143 HOH HOH . E 4 HOH A 126 1226 104 HOH HOH . E 4 HOH A 127 1227 83 HOH HOH . E 4 HOH A 128 1228 46 HOH HOH . E 4 HOH A 129 1229 43 HOH HOH . E 4 HOH A 130 1230 142 HOH HOH . E 4 HOH A 131 1231 50 HOH HOH . E 4 HOH A 132 1232 161 HOH HOH . E 4 HOH A 133 1233 73 HOH HOH . E 4 HOH A 134 1234 63 HOH HOH . E 4 HOH A 135 1235 55 HOH HOH . E 4 HOH A 136 1236 111 HOH HOH . E 4 HOH A 137 1237 81 HOH HOH . E 4 HOH A 138 1238 45 HOH HOH . E 4 HOH A 139 1239 58 HOH HOH . E 4 HOH A 140 1240 52 HOH HOH . E 4 HOH A 141 1241 75 HOH HOH . E 4 HOH A 142 1242 183 HOH HOH . E 4 HOH A 143 1243 144 HOH HOH . E 4 HOH A 144 1244 137 HOH HOH . E 4 HOH A 145 1245 59 HOH HOH . E 4 HOH A 146 1246 61 HOH HOH . E 4 HOH A 147 1247 153 HOH HOH . E 4 HOH A 148 1248 138 HOH HOH . E 4 HOH A 149 1249 103 HOH HOH . E 4 HOH A 150 1250 110 HOH HOH . E 4 HOH A 151 1251 160 HOH HOH . E 4 HOH A 152 1252 105 HOH HOH . E 4 HOH A 153 1253 179 HOH HOH . E 4 HOH A 154 1254 141 HOH HOH . E 4 HOH A 155 1255 185 HOH HOH . E 4 HOH A 156 1256 60 HOH HOH . E 4 HOH A 157 1257 57 HOH HOH . E 4 HOH A 158 1258 165 HOH HOH . E 4 HOH A 159 1259 89 HOH HOH . E 4 HOH A 160 1260 194 HOH HOH . E 4 HOH A 161 1261 112 HOH HOH . E 4 HOH A 162 1262 156 HOH HOH . E 4 HOH A 163 1263 77 HOH HOH . E 4 HOH A 164 1264 203 HOH HOH . E 4 HOH A 165 1265 164 HOH HOH . E 4 HOH A 166 1266 186 HOH HOH . E 4 HOH A 167 1267 159 HOH HOH . E 4 HOH A 168 1268 163 HOH HOH . E 4 HOH A 169 1269 195 HOH HOH . E 4 HOH A 170 1270 134 HOH HOH . E 4 HOH A 171 1271 120 HOH HOH . E 4 HOH A 172 1272 62 HOH HOH . E 4 HOH A 173 1273 201 HOH HOH . E 4 HOH A 174 1274 157 HOH HOH . E 4 HOH A 175 1275 88 HOH HOH . E 4 HOH A 176 1276 125 HOH HOH . E 4 HOH A 177 1277 202 HOH HOH . E 4 HOH A 178 1278 118 HOH HOH . E 4 HOH A 179 1279 122 HOH HOH . E 4 HOH A 180 1280 96 HOH HOH . E 4 HOH A 181 1281 182 HOH HOH . E 4 HOH A 182 1282 196 HOH HOH . E 4 HOH A 183 1283 139 HOH HOH . E 4 HOH A 184 1284 109 HOH HOH . E 4 HOH A 185 1285 192 HOH HOH . E 4 HOH A 186 1286 190 HOH HOH . E 4 HOH A 187 1287 130 HOH HOH . E 4 HOH A 188 1288 149 HOH HOH . E 4 HOH A 189 1289 101 HOH HOH . E 4 HOH A 190 1290 132 HOH HOH . E 4 HOH A 191 1291 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . D 3 17.797 1.358 11.257 1 33.13 ? N NO3 1003 A 1 HETATM 2 O O1 NO3 . . . D 3 17.737 0.009 10.879 1 37.51 ? O1 NO3 1003 A 1 HETATM 3 O O2 NO3 . . . D 3 17.755 1.714 12.603 1 33.9 ? O2 NO3 1003 A 1 HETATM 4 O O3 NO3 . . . D 3 17.909 2.354 10.29 1 36.05 ? O3 NO3 1003 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #