data_6K2T # _model_server_result.job_id vw8DRe_NQ4ENndQjaW3lgQ _model_server_result.datetime_utc '2025-07-23 06:13:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k2t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 6K2T # _exptl.entry_id 6K2T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K2T _cell.length_a 68.19 _cell.length_b 68.19 _cell.length_c 108.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K2T _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 178 A CYS 178 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A O THR 16 A THR 16 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc2 A O PRO 175 A PRO 175 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc3 A O VAL 177 A VAL 177 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc4 A OD1 ASP 200 A ASP 200 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc5 A OD2 ASP 200 A ASP 200 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc6 A OD1 ASP 260 A ASP 260 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc7 A OD2 ASP 260 A ASP 260 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc8 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc9 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc10 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc11 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc12 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc13 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc14 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc15 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 237 n n N O2 NO3 sing 238 n n N O3 NO3 sing 239 n n # _atom_sites.entry_id 6K2T _atom_sites.fract_transf_matrix[1][1] 0.014665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014665 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1001 1001 CA CA . C 2 CA A 1 1002 1002 CA CA . D 3 NO3 A 1 1003 2001 NO3 NO3 . E 4 HOH A 1 1101 200 HOH HOH . E 4 HOH A 2 1102 185 HOH HOH . E 4 HOH A 3 1103 81 HOH HOH . E 4 HOH A 4 1104 169 HOH HOH . E 4 HOH A 5 1105 202 HOH HOH . E 4 HOH A 6 1106 6 HOH HOH . E 4 HOH A 7 1107 75 HOH HOH . E 4 HOH A 8 1108 84 HOH HOH . E 4 HOH A 9 1109 138 HOH HOH . E 4 HOH A 10 1110 102 HOH HOH . E 4 HOH A 11 1111 130 HOH HOH . E 4 HOH A 12 1112 64 HOH HOH . E 4 HOH A 13 1113 160 HOH HOH . E 4 HOH A 14 1114 109 HOH HOH . E 4 HOH A 15 1115 67 HOH HOH . E 4 HOH A 16 1116 87 HOH HOH . E 4 HOH A 17 1117 4 HOH HOH . E 4 HOH A 18 1118 8 HOH HOH . E 4 HOH A 19 1119 9 HOH HOH . E 4 HOH A 20 1120 180 HOH HOH . E 4 HOH A 21 1121 18 HOH HOH . E 4 HOH A 22 1122 146 HOH HOH . E 4 HOH A 23 1123 69 HOH HOH . E 4 HOH A 24 1124 32 HOH HOH . E 4 HOH A 25 1125 118 HOH HOH . E 4 HOH A 26 1126 2 HOH HOH . E 4 HOH A 27 1127 86 HOH HOH . E 4 HOH A 28 1128 20 HOH HOH . E 4 HOH A 29 1129 117 HOH HOH . E 4 HOH A 30 1130 89 HOH HOH . E 4 HOH A 31 1131 66 HOH HOH . E 4 HOH A 32 1132 206 HOH HOH . E 4 HOH A 33 1133 95 HOH HOH . E 4 HOH A 34 1134 174 HOH HOH . E 4 HOH A 35 1135 1 HOH HOH . E 4 HOH A 36 1136 26 HOH HOH . E 4 HOH A 37 1137 96 HOH HOH . E 4 HOH A 38 1138 79 HOH HOH . E 4 HOH A 39 1139 135 HOH HOH . E 4 HOH A 40 1140 30 HOH HOH . E 4 HOH A 41 1141 124 HOH HOH . E 4 HOH A 42 1142 5 HOH HOH . E 4 HOH A 43 1143 16 HOH HOH . E 4 HOH A 44 1144 19 HOH HOH . E 4 HOH A 45 1145 207 HOH HOH . E 4 HOH A 46 1146 11 HOH HOH . E 4 HOH A 47 1147 93 HOH HOH . E 4 HOH A 48 1148 7 HOH HOH . E 4 HOH A 49 1149 165 HOH HOH . E 4 HOH A 50 1150 14 HOH HOH . E 4 HOH A 51 1151 101 HOH HOH . E 4 HOH A 52 1152 175 HOH HOH . E 4 HOH A 53 1153 3 HOH HOH . E 4 HOH A 54 1154 107 HOH HOH . E 4 HOH A 55 1155 156 HOH HOH . E 4 HOH A 56 1156 31 HOH HOH . E 4 HOH A 57 1157 13 HOH HOH . E 4 HOH A 58 1158 23 HOH HOH . E 4 HOH A 59 1159 112 HOH HOH . E 4 HOH A 60 1160 41 HOH HOH . E 4 HOH A 61 1161 78 HOH HOH . E 4 HOH A 62 1162 21 HOH HOH . E 4 HOH A 63 1163 15 HOH HOH . E 4 HOH A 64 1164 136 HOH HOH . E 4 HOH A 65 1165 108 HOH HOH . E 4 HOH A 66 1166 10 HOH HOH . E 4 HOH A 67 1167 133 HOH HOH . E 4 HOH A 68 1168 77 HOH HOH . E 4 HOH A 69 1169 142 HOH HOH . E 4 HOH A 70 1170 29 HOH HOH . E 4 HOH A 71 1171 40 HOH HOH . E 4 HOH A 72 1172 91 HOH HOH . E 4 HOH A 73 1173 36 HOH HOH . E 4 HOH A 74 1174 120 HOH HOH . E 4 HOH A 75 1175 37 HOH HOH . E 4 HOH A 76 1176 83 HOH HOH . E 4 HOH A 77 1177 25 HOH HOH . E 4 HOH A 78 1178 12 HOH HOH . E 4 HOH A 79 1179 27 HOH HOH . E 4 HOH A 80 1180 51 HOH HOH . E 4 HOH A 81 1181 35 HOH HOH . E 4 HOH A 82 1182 122 HOH HOH . E 4 HOH A 83 1183 191 HOH HOH . E 4 HOH A 84 1184 177 HOH HOH . E 4 HOH A 85 1185 113 HOH HOH . E 4 HOH A 86 1186 154 HOH HOH . E 4 HOH A 87 1187 22 HOH HOH . E 4 HOH A 88 1188 68 HOH HOH . E 4 HOH A 89 1189 17 HOH HOH . E 4 HOH A 90 1190 85 HOH HOH . E 4 HOH A 91 1191 168 HOH HOH . E 4 HOH A 92 1192 100 HOH HOH . E 4 HOH A 93 1193 97 HOH HOH . E 4 HOH A 94 1194 194 HOH HOH . E 4 HOH A 95 1195 43 HOH HOH . E 4 HOH A 96 1196 157 HOH HOH . E 4 HOH A 97 1197 163 HOH HOH . E 4 HOH A 98 1198 162 HOH HOH . E 4 HOH A 99 1199 195 HOH HOH . E 4 HOH A 100 1200 48 HOH HOH . E 4 HOH A 101 1201 155 HOH HOH . E 4 HOH A 102 1202 55 HOH HOH . E 4 HOH A 103 1203 71 HOH HOH . E 4 HOH A 104 1204 39 HOH HOH . E 4 HOH A 105 1205 186 HOH HOH . E 4 HOH A 106 1206 90 HOH HOH . E 4 HOH A 107 1207 129 HOH HOH . E 4 HOH A 108 1208 173 HOH HOH . E 4 HOH A 109 1209 171 HOH HOH . E 4 HOH A 110 1210 189 HOH HOH . E 4 HOH A 111 1211 70 HOH HOH . E 4 HOH A 112 1212 49 HOH HOH . E 4 HOH A 113 1213 45 HOH HOH . E 4 HOH A 114 1214 82 HOH HOH . E 4 HOH A 115 1215 33 HOH HOH . E 4 HOH A 116 1216 50 HOH HOH . E 4 HOH A 117 1217 42 HOH HOH . E 4 HOH A 118 1218 74 HOH HOH . E 4 HOH A 119 1219 114 HOH HOH . E 4 HOH A 120 1220 148 HOH HOH . E 4 HOH A 121 1221 72 HOH HOH . E 4 HOH A 122 1222 38 HOH HOH . E 4 HOH A 123 1223 218 HOH HOH . E 4 HOH A 124 1224 141 HOH HOH . E 4 HOH A 125 1225 24 HOH HOH . E 4 HOH A 126 1226 116 HOH HOH . E 4 HOH A 127 1227 28 HOH HOH . E 4 HOH A 128 1228 203 HOH HOH . E 4 HOH A 129 1229 47 HOH HOH . E 4 HOH A 130 1230 137 HOH HOH . E 4 HOH A 131 1231 128 HOH HOH . E 4 HOH A 132 1232 53 HOH HOH . E 4 HOH A 133 1233 59 HOH HOH . E 4 HOH A 134 1234 209 HOH HOH . E 4 HOH A 135 1235 131 HOH HOH . E 4 HOH A 136 1236 73 HOH HOH . E 4 HOH A 137 1237 184 HOH HOH . E 4 HOH A 138 1238 65 HOH HOH . E 4 HOH A 139 1239 34 HOH HOH . E 4 HOH A 140 1240 46 HOH HOH . E 4 HOH A 141 1241 140 HOH HOH . E 4 HOH A 142 1242 170 HOH HOH . E 4 HOH A 143 1243 98 HOH HOH . E 4 HOH A 144 1244 44 HOH HOH . E 4 HOH A 145 1245 111 HOH HOH . E 4 HOH A 146 1246 106 HOH HOH . E 4 HOH A 147 1247 161 HOH HOH . E 4 HOH A 148 1248 149 HOH HOH . E 4 HOH A 149 1249 56 HOH HOH . E 4 HOH A 150 1250 196 HOH HOH . E 4 HOH A 151 1251 159 HOH HOH . E 4 HOH A 152 1252 127 HOH HOH . E 4 HOH A 153 1253 105 HOH HOH . E 4 HOH A 154 1254 192 HOH HOH . E 4 HOH A 155 1255 151 HOH HOH . E 4 HOH A 156 1256 213 HOH HOH . E 4 HOH A 157 1257 58 HOH HOH . E 4 HOH A 158 1258 205 HOH HOH . E 4 HOH A 159 1259 54 HOH HOH . E 4 HOH A 160 1260 183 HOH HOH . E 4 HOH A 161 1261 181 HOH HOH . E 4 HOH A 162 1262 88 HOH HOH . E 4 HOH A 163 1263 143 HOH HOH . E 4 HOH A 164 1264 147 HOH HOH . E 4 HOH A 165 1265 104 HOH HOH . E 4 HOH A 166 1266 80 HOH HOH . E 4 HOH A 167 1267 94 HOH HOH . E 4 HOH A 168 1268 61 HOH HOH . E 4 HOH A 169 1269 52 HOH HOH . E 4 HOH A 170 1270 150 HOH HOH . E 4 HOH A 171 1271 60 HOH HOH . E 4 HOH A 172 1272 57 HOH HOH . E 4 HOH A 173 1273 139 HOH HOH . E 4 HOH A 174 1274 144 HOH HOH . E 4 HOH A 175 1275 217 HOH HOH . E 4 HOH A 176 1276 178 HOH HOH . E 4 HOH A 177 1277 199 HOH HOH . E 4 HOH A 178 1278 176 HOH HOH . E 4 HOH A 179 1279 179 HOH HOH . E 4 HOH A 180 1280 121 HOH HOH . E 4 HOH A 181 1281 76 HOH HOH . E 4 HOH A 182 1282 62 HOH HOH . E 4 HOH A 183 1283 197 HOH HOH . E 4 HOH A 184 1284 92 HOH HOH . E 4 HOH A 185 1285 103 HOH HOH . E 4 HOH A 186 1286 152 HOH HOH . E 4 HOH A 187 1287 166 HOH HOH . E 4 HOH A 188 1288 164 HOH HOH . E 4 HOH A 189 1289 119 HOH HOH . E 4 HOH A 190 1290 198 HOH HOH . E 4 HOH A 191 1291 210 HOH HOH . E 4 HOH A 192 1292 63 HOH HOH . E 4 HOH A 193 1293 126 HOH HOH . E 4 HOH A 194 1294 216 HOH HOH . E 4 HOH A 195 1295 123 HOH HOH . E 4 HOH A 196 1296 204 HOH HOH . E 4 HOH A 197 1297 215 HOH HOH . E 4 HOH A 198 1298 145 HOH HOH . E 4 HOH A 199 1299 187 HOH HOH . E 4 HOH A 200 1300 110 HOH HOH . E 4 HOH A 201 1301 201 HOH HOH . E 4 HOH A 202 1302 125 HOH HOH . E 4 HOH A 203 1303 190 HOH HOH . E 4 HOH A 204 1304 172 HOH HOH . E 4 HOH A 205 1305 132 HOH HOH . E 4 HOH A 206 1306 99 HOH HOH . E 4 HOH A 207 1307 167 HOH HOH . E 4 HOH A 208 1308 134 HOH HOH . E 4 HOH A 209 1309 115 HOH HOH . E 4 HOH A 210 1310 208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . D 3 17.773 1.327 11.276 1 32.31 ? N NO3 1003 A 1 HETATM 2 O O1 NO3 . . . D 3 17.667 0.01 10.824 1 38.14 ? O1 NO3 1003 A 1 HETATM 3 O O2 NO3 . . . D 3 17.744 1.598 12.638 1 34.23 ? O2 NO3 1003 A 1 HETATM 4 O O3 NO3 . . . D 3 17.905 2.374 10.368 1 34.46 ? O3 NO3 1003 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #