data_6K2V # _model_server_result.job_id UieiibziOSVjDS-ZJ7f1Qg _model_server_result.datetime_utc '2025-05-24 13:48:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 6K2V # _exptl.entry_id 6K2V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K2V _cell.length_a 68.28 _cell.length_b 68.28 _cell.length_c 108.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 A SG CYS 178 A CYS 178 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A O THR 16 A THR 16 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 A O PRO 175 A PRO 175 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 A O VAL 177 A VAL 177 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc4 A OD1 ASP 200 A ASP 200 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc5 A OD2 ASP 200 A ASP 200 1_555 B CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc6 A OD1 ASP 260 A ASP 260 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc7 A OD2 ASP 260 A ASP 260 1_555 C CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc8 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc9 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1153 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc10 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc11 B CA CA . A CA 1001 1_555 E O HOH . A HOH 1235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc12 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc13 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc14 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc15 C CA CA . A CA 1002 1_555 E O HOH . A HOH 1276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 237 n n N O2 NO3 sing 238 n n N O3 NO3 sing 239 n n # _atom_sites.entry_id 6K2V _atom_sites.fract_transf_matrix[1][1] 0.014646 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014646 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009241 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1001 1001 CA CA . C 2 CA A 1 1002 1002 CA CA . D 3 NO3 A 1 1003 2001 NO3 NO3 . E 4 HOH A 1 1101 213 HOH HOH . E 4 HOH A 2 1102 85 HOH HOH . E 4 HOH A 3 1103 6 HOH HOH . E 4 HOH A 4 1104 161 HOH HOH . E 4 HOH A 5 1105 181 HOH HOH . E 4 HOH A 6 1106 116 HOH HOH . E 4 HOH A 7 1107 208 HOH HOH . E 4 HOH A 8 1108 197 HOH HOH . E 4 HOH A 9 1109 174 HOH HOH . E 4 HOH A 10 1110 88 HOH HOH . E 4 HOH A 11 1111 91 HOH HOH . E 4 HOH A 12 1112 67 HOH HOH . E 4 HOH A 13 1113 172 HOH HOH . E 4 HOH A 14 1114 108 HOH HOH . E 4 HOH A 15 1115 70 HOH HOH . E 4 HOH A 16 1116 94 HOH HOH . E 4 HOH A 17 1117 4 HOH HOH . E 4 HOH A 18 1118 8 HOH HOH . E 4 HOH A 19 1119 69 HOH HOH . E 4 HOH A 20 1120 90 HOH HOH . E 4 HOH A 21 1121 77 HOH HOH . E 4 HOH A 22 1122 1 HOH HOH . E 4 HOH A 23 1123 18 HOH HOH . E 4 HOH A 24 1124 202 HOH HOH . E 4 HOH A 25 1125 102 HOH HOH . E 4 HOH A 26 1126 2 HOH HOH . E 4 HOH A 27 1127 32 HOH HOH . E 4 HOH A 28 1128 128 HOH HOH . E 4 HOH A 29 1129 30 HOH HOH . E 4 HOH A 30 1130 133 HOH HOH . E 4 HOH A 31 1131 72 HOH HOH . E 4 HOH A 32 1132 20 HOH HOH . E 4 HOH A 33 1133 5 HOH HOH . E 4 HOH A 34 1134 115 HOH HOH . E 4 HOH A 35 1135 71 HOH HOH . E 4 HOH A 36 1136 13 HOH HOH . E 4 HOH A 37 1137 23 HOH HOH . E 4 HOH A 38 1138 82 HOH HOH . E 4 HOH A 39 1139 37 HOH HOH . E 4 HOH A 40 1140 147 HOH HOH . E 4 HOH A 41 1141 101 HOH HOH . E 4 HOH A 42 1142 155 HOH HOH . E 4 HOH A 43 1143 3 HOH HOH . E 4 HOH A 44 1144 89 HOH HOH . E 4 HOH A 45 1145 179 HOH HOH . E 4 HOH A 46 1146 191 HOH HOH . E 4 HOH A 47 1147 124 HOH HOH . E 4 HOH A 48 1148 10 HOH HOH . E 4 HOH A 49 1149 14 HOH HOH . E 4 HOH A 50 1150 126 HOH HOH . E 4 HOH A 51 1151 187 HOH HOH . E 4 HOH A 52 1152 138 HOH HOH . E 4 HOH A 53 1153 7 HOH HOH . E 4 HOH A 54 1154 26 HOH HOH . E 4 HOH A 55 1155 96 HOH HOH . E 4 HOH A 56 1156 16 HOH HOH . E 4 HOH A 57 1157 103 HOH HOH . E 4 HOH A 58 1158 22 HOH HOH . E 4 HOH A 59 1159 31 HOH HOH . E 4 HOH A 60 1160 68 HOH HOH . E 4 HOH A 61 1161 35 HOH HOH . E 4 HOH A 62 1162 11 HOH HOH . E 4 HOH A 63 1163 79 HOH HOH . E 4 HOH A 64 1164 19 HOH HOH . E 4 HOH A 65 1165 98 HOH HOH . E 4 HOH A 66 1166 43 HOH HOH . E 4 HOH A 67 1167 81 HOH HOH . E 4 HOH A 68 1168 29 HOH HOH . E 4 HOH A 69 1169 156 HOH HOH . E 4 HOH A 70 1170 205 HOH HOH . E 4 HOH A 71 1171 9 HOH HOH . E 4 HOH A 72 1172 55 HOH HOH . E 4 HOH A 73 1173 139 HOH HOH . E 4 HOH A 74 1174 21 HOH HOH . E 4 HOH A 75 1175 40 HOH HOH . E 4 HOH A 76 1176 52 HOH HOH . E 4 HOH A 77 1177 41 HOH HOH . E 4 HOH A 78 1178 36 HOH HOH . E 4 HOH A 79 1179 39 HOH HOH . E 4 HOH A 80 1180 175 HOH HOH . E 4 HOH A 81 1181 125 HOH HOH . E 4 HOH A 82 1182 74 HOH HOH . E 4 HOH A 83 1183 12 HOH HOH . E 4 HOH A 84 1184 195 HOH HOH . E 4 HOH A 85 1185 180 HOH HOH . E 4 HOH A 86 1186 164 HOH HOH . E 4 HOH A 87 1187 25 HOH HOH . E 4 HOH A 88 1188 86 HOH HOH . E 4 HOH A 89 1189 17 HOH HOH . E 4 HOH A 90 1190 38 HOH HOH . E 4 HOH A 91 1191 28 HOH HOH . E 4 HOH A 92 1192 107 HOH HOH . E 4 HOH A 93 1193 27 HOH HOH . E 4 HOH A 94 1194 33 HOH HOH . E 4 HOH A 95 1195 24 HOH HOH . E 4 HOH A 96 1196 87 HOH HOH . E 4 HOH A 97 1197 15 HOH HOH . E 4 HOH A 98 1198 178 HOH HOH . E 4 HOH A 99 1199 48 HOH HOH . E 4 HOH A 100 1200 121 HOH HOH . E 4 HOH A 101 1201 75 HOH HOH . E 4 HOH A 102 1202 50 HOH HOH . E 4 HOH A 103 1203 83 HOH HOH . E 4 HOH A 104 1204 106 HOH HOH . E 4 HOH A 105 1205 200 HOH HOH . E 4 HOH A 106 1206 49 HOH HOH . E 4 HOH A 107 1207 42 HOH HOH . E 4 HOH A 108 1208 110 HOH HOH . E 4 HOH A 109 1209 136 HOH HOH . E 4 HOH A 110 1210 95 HOH HOH . E 4 HOH A 111 1211 143 HOH HOH . E 4 HOH A 112 1212 34 HOH HOH . E 4 HOH A 113 1213 45 HOH HOH . E 4 HOH A 114 1214 44 HOH HOH . E 4 HOH A 115 1215 196 HOH HOH . E 4 HOH A 116 1216 154 HOH HOH . E 4 HOH A 117 1217 190 HOH HOH . E 4 HOH A 118 1218 56 HOH HOH . E 4 HOH A 119 1219 165 HOH HOH . E 4 HOH A 120 1220 57 HOH HOH . E 4 HOH A 121 1221 119 HOH HOH . E 4 HOH A 122 1222 73 HOH HOH . E 4 HOH A 123 1223 54 HOH HOH . E 4 HOH A 124 1224 47 HOH HOH . E 4 HOH A 125 1225 141 HOH HOH . E 4 HOH A 126 1226 144 HOH HOH . E 4 HOH A 127 1227 173 HOH HOH . E 4 HOH A 128 1228 199 HOH HOH . E 4 HOH A 129 1229 64 HOH HOH . E 4 HOH A 130 1230 113 HOH HOH . E 4 HOH A 131 1231 78 HOH HOH . E 4 HOH A 132 1232 46 HOH HOH . E 4 HOH A 133 1233 118 HOH HOH . E 4 HOH A 134 1234 152 HOH HOH . E 4 HOH A 135 1235 59 HOH HOH . E 4 HOH A 136 1236 60 HOH HOH . E 4 HOH A 137 1237 140 HOH HOH . E 4 HOH A 138 1238 148 HOH HOH . E 4 HOH A 139 1239 163 HOH HOH . E 4 HOH A 140 1240 120 HOH HOH . E 4 HOH A 141 1241 51 HOH HOH . E 4 HOH A 142 1242 62 HOH HOH . E 4 HOH A 143 1243 99 HOH HOH . E 4 HOH A 144 1244 76 HOH HOH . E 4 HOH A 145 1245 84 HOH HOH . E 4 HOH A 146 1246 111 HOH HOH . E 4 HOH A 147 1247 157 HOH HOH . E 4 HOH A 148 1248 151 HOH HOH . E 4 HOH A 149 1249 184 HOH HOH . E 4 HOH A 150 1250 167 HOH HOH . E 4 HOH A 151 1251 130 HOH HOH . E 4 HOH A 152 1252 186 HOH HOH . E 4 HOH A 153 1253 80 HOH HOH . E 4 HOH A 154 1254 168 HOH HOH . E 4 HOH A 155 1255 58 HOH HOH . E 4 HOH A 156 1256 194 HOH HOH . E 4 HOH A 157 1257 193 HOH HOH . E 4 HOH A 158 1258 53 HOH HOH . E 4 HOH A 159 1259 93 HOH HOH . E 4 HOH A 160 1260 182 HOH HOH . E 4 HOH A 161 1261 112 HOH HOH . E 4 HOH A 162 1262 61 HOH HOH . E 4 HOH A 163 1263 159 HOH HOH . E 4 HOH A 164 1264 192 HOH HOH . E 4 HOH A 165 1265 123 HOH HOH . E 4 HOH A 166 1266 104 HOH HOH . E 4 HOH A 167 1267 166 HOH HOH . E 4 HOH A 168 1268 206 HOH HOH . E 4 HOH A 169 1269 211 HOH HOH . E 4 HOH A 170 1270 109 HOH HOH . E 4 HOH A 171 1271 212 HOH HOH . E 4 HOH A 172 1272 201 HOH HOH . E 4 HOH A 173 1273 65 HOH HOH . E 4 HOH A 174 1274 158 HOH HOH . E 4 HOH A 175 1275 129 HOH HOH . E 4 HOH A 176 1276 63 HOH HOH . E 4 HOH A 177 1277 198 HOH HOH . E 4 HOH A 178 1278 210 HOH HOH . E 4 HOH A 179 1279 209 HOH HOH . E 4 HOH A 180 1280 177 HOH HOH . E 4 HOH A 181 1281 135 HOH HOH . E 4 HOH A 182 1282 170 HOH HOH . E 4 HOH A 183 1283 169 HOH HOH . E 4 HOH A 184 1284 127 HOH HOH . E 4 HOH A 185 1285 92 HOH HOH . E 4 HOH A 186 1286 131 HOH HOH . E 4 HOH A 187 1287 100 HOH HOH . E 4 HOH A 188 1288 183 HOH HOH . E 4 HOH A 189 1289 97 HOH HOH . E 4 HOH A 190 1290 207 HOH HOH . E 4 HOH A 191 1291 160 HOH HOH . E 4 HOH A 192 1292 189 HOH HOH . E 4 HOH A 193 1293 117 HOH HOH . E 4 HOH A 194 1294 134 HOH HOH . E 4 HOH A 195 1295 162 HOH HOH . E 4 HOH A 196 1296 105 HOH HOH . E 4 HOH A 197 1297 142 HOH HOH . E 4 HOH A 198 1298 185 HOH HOH . E 4 HOH A 199 1299 204 HOH HOH . E 4 HOH A 200 1300 145 HOH HOH . E 4 HOH A 201 1301 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . D 3 17.81 1.302 11.275 1 31.73 ? N NO3 1003 A 1 HETATM 2 O O1 NO3 . . . D 3 17.704 -0.047 10.911 1 35.62 ? O1 NO3 1003 A 1 HETATM 3 O O2 NO3 . . . D 3 17.716 1.673 12.612 1 33.05 ? O2 NO3 1003 A 1 HETATM 4 O O3 NO3 . . . D 3 18.008 2.284 10.307 1 31.42 ? O3 NO3 1003 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #