data_6K2X # _model_server_result.job_id GZ1NwtpMQrj9Y2GGmZQ3Gg _model_server_result.datetime_utc '2025-07-13 10:51:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 6K2X # _exptl.entry_id 6K2X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 140.908 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PRASEODYMIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K2X _cell.length_a 68.17 _cell.length_b 68.17 _cell.length_c 108.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K2X _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 123 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 178 A CYS 178 1_555 A SG CYS 249 A CYS 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc1 A O THR 16 A THR 16 1_555 C PR PR . A PR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc2 A O PRO 175 A PRO 175 1_555 B PR PR . A PR 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 A O VAL 177 A VAL 177 1_555 B PR PR . A PR 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc4 A OD1 ASP 200 A ASP 200 1_555 B PR PR . A PR 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? metalc ? metalc5 A OD2 ASP 200 A ASP 200 1_555 B PR PR . A PR 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc6 A OD1 ASP 260 A ASP 260 1_555 C PR PR . A PR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc7 A OD2 ASP 260 A ASP 260 1_555 C PR PR . A PR 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc8 B PR PR . A PR 1001 1_555 E O HOH . A HOH 1114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc9 B PR PR . A PR 1001 1_555 E O HOH . A HOH 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc10 B PR PR . A PR 1001 1_555 E O HOH . A HOH 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc11 B PR PR . A PR 1001 1_555 E O HOH . A HOH 1170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc12 B PR PR . A PR 1001 1_555 E O HOH . A HOH 1230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc13 C PR PR . A PR 1002 1_555 E O HOH . A HOH 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc14 C PR PR . A PR 1002 1_555 E O HOH . A HOH 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc15 C PR PR . A PR 1002 1_555 E O HOH . A HOH 1214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc16 C PR PR . A PR 1002 1_555 E O HOH . A HOH 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc17 C PR PR . A PR 1002 1_555 E O HOH . A HOH 1246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc18 C PR PR . A PR 1002 1_555 E O HOH . A HOH 1254 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? # _chem_comp.formula 'Pr 3' _chem_comp.formula_weight 140.908 _chem_comp.id PR _chem_comp.mon_nstd_flag . _chem_comp.name 'PRASEODYMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6K2X _atom_sites.fract_transf_matrix[1][1] 0.014669 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014669 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PR A 1 1001 1001 PR PR . C 2 PR A 1 1002 1002 PR PR . D 3 NO3 A 1 1003 2001 NO3 NO3 . E 4 HOH A 1 1101 202 HOH HOH . E 4 HOH A 2 1102 168 HOH HOH . E 4 HOH A 3 1103 24 HOH HOH . E 4 HOH A 4 1104 128 HOH HOH . E 4 HOH A 5 1105 25 HOH HOH . E 4 HOH A 6 1106 36 HOH HOH . E 4 HOH A 7 1107 174 HOH HOH . E 4 HOH A 8 1108 66 HOH HOH . E 4 HOH A 9 1109 191 HOH HOH . E 4 HOH A 10 1110 35 HOH HOH . E 4 HOH A 11 1111 186 HOH HOH . E 4 HOH A 12 1112 115 HOH HOH . E 4 HOH A 13 1113 26 HOH HOH . E 4 HOH A 14 1114 13 HOH HOH . E 4 HOH A 15 1115 94 HOH HOH . E 4 HOH A 16 1116 52 HOH HOH . E 4 HOH A 17 1117 81 HOH HOH . E 4 HOH A 18 1118 41 HOH HOH . E 4 HOH A 19 1119 59 HOH HOH . E 4 HOH A 20 1120 69 HOH HOH . E 4 HOH A 21 1121 65 HOH HOH . E 4 HOH A 22 1122 11 HOH HOH . E 4 HOH A 23 1123 16 HOH HOH . E 4 HOH A 24 1124 44 HOH HOH . E 4 HOH A 25 1125 12 HOH HOH . E 4 HOH A 26 1126 172 HOH HOH . E 4 HOH A 27 1127 97 HOH HOH . E 4 HOH A 28 1128 98 HOH HOH . E 4 HOH A 29 1129 110 HOH HOH . E 4 HOH A 30 1130 90 HOH HOH . E 4 HOH A 31 1131 15 HOH HOH . E 4 HOH A 32 1132 48 HOH HOH . E 4 HOH A 33 1133 75 HOH HOH . E 4 HOH A 34 1134 19 HOH HOH . E 4 HOH A 35 1135 164 HOH HOH . E 4 HOH A 36 1136 58 HOH HOH . E 4 HOH A 37 1137 154 HOH HOH . E 4 HOH A 38 1138 82 HOH HOH . E 4 HOH A 39 1139 184 HOH HOH . E 4 HOH A 40 1140 37 HOH HOH . E 4 HOH A 41 1141 47 HOH HOH . E 4 HOH A 42 1142 20 HOH HOH . E 4 HOH A 43 1143 7 HOH HOH . E 4 HOH A 44 1144 144 HOH HOH . E 4 HOH A 45 1145 23 HOH HOH . E 4 HOH A 46 1146 3 HOH HOH . E 4 HOH A 47 1147 132 HOH HOH . E 4 HOH A 48 1148 89 HOH HOH . E 4 HOH A 49 1149 130 HOH HOH . E 4 HOH A 50 1150 28 HOH HOH . E 4 HOH A 51 1151 187 HOH HOH . E 4 HOH A 52 1152 9 HOH HOH . E 4 HOH A 53 1153 179 HOH HOH . E 4 HOH A 54 1154 111 HOH HOH . E 4 HOH A 55 1155 42 HOH HOH . E 4 HOH A 56 1156 50 HOH HOH . E 4 HOH A 57 1157 46 HOH HOH . E 4 HOH A 58 1158 1 HOH HOH . E 4 HOH A 59 1159 77 HOH HOH . E 4 HOH A 60 1160 80 HOH HOH . E 4 HOH A 61 1161 71 HOH HOH . E 4 HOH A 62 1162 10 HOH HOH . E 4 HOH A 63 1163 137 HOH HOH . E 4 HOH A 64 1164 79 HOH HOH . E 4 HOH A 65 1165 64 HOH HOH . E 4 HOH A 66 1166 4 HOH HOH . E 4 HOH A 67 1167 56 HOH HOH . E 4 HOH A 68 1168 8 HOH HOH . E 4 HOH A 69 1169 151 HOH HOH . E 4 HOH A 70 1170 196 HOH HOH . E 4 HOH A 71 1171 83 HOH HOH . E 4 HOH A 72 1172 101 HOH HOH . E 4 HOH A 73 1173 114 HOH HOH . E 4 HOH A 74 1174 107 HOH HOH . E 4 HOH A 75 1175 70 HOH HOH . E 4 HOH A 76 1176 55 HOH HOH . E 4 HOH A 77 1177 43 HOH HOH . E 4 HOH A 78 1178 33 HOH HOH . E 4 HOH A 79 1179 57 HOH HOH . E 4 HOH A 80 1180 173 HOH HOH . E 4 HOH A 81 1181 54 HOH HOH . E 4 HOH A 82 1182 5 HOH HOH . E 4 HOH A 83 1183 30 HOH HOH . E 4 HOH A 84 1184 152 HOH HOH . E 4 HOH A 85 1185 125 HOH HOH . E 4 HOH A 86 1186 39 HOH HOH . E 4 HOH A 87 1187 14 HOH HOH . E 4 HOH A 88 1188 29 HOH HOH . E 4 HOH A 89 1189 72 HOH HOH . E 4 HOH A 90 1190 61 HOH HOH . E 4 HOH A 91 1191 38 HOH HOH . E 4 HOH A 92 1192 78 HOH HOH . E 4 HOH A 93 1193 147 HOH HOH . E 4 HOH A 94 1194 171 HOH HOH . E 4 HOH A 95 1195 84 HOH HOH . E 4 HOH A 96 1196 49 HOH HOH . E 4 HOH A 97 1197 45 HOH HOH . E 4 HOH A 98 1198 156 HOH HOH . E 4 HOH A 99 1199 122 HOH HOH . E 4 HOH A 100 1200 146 HOH HOH . E 4 HOH A 101 1201 135 HOH HOH . E 4 HOH A 102 1202 86 HOH HOH . E 4 HOH A 103 1203 2 HOH HOH . E 4 HOH A 104 1204 131 HOH HOH . E 4 HOH A 105 1205 149 HOH HOH . E 4 HOH A 106 1206 119 HOH HOH . E 4 HOH A 107 1207 21 HOH HOH . E 4 HOH A 108 1208 85 HOH HOH . E 4 HOH A 109 1209 92 HOH HOH . E 4 HOH A 110 1210 138 HOH HOH . E 4 HOH A 111 1211 136 HOH HOH . E 4 HOH A 112 1212 133 HOH HOH . E 4 HOH A 113 1213 105 HOH HOH . E 4 HOH A 114 1214 126 HOH HOH . E 4 HOH A 115 1215 109 HOH HOH . E 4 HOH A 116 1216 18 HOH HOH . E 4 HOH A 117 1217 17 HOH HOH . E 4 HOH A 118 1218 170 HOH HOH . E 4 HOH A 119 1219 51 HOH HOH . E 4 HOH A 120 1220 93 HOH HOH . E 4 HOH A 121 1221 40 HOH HOH . E 4 HOH A 122 1222 22 HOH HOH . E 4 HOH A 123 1223 142 HOH HOH . E 4 HOH A 124 1224 158 HOH HOH . E 4 HOH A 125 1225 60 HOH HOH . E 4 HOH A 126 1226 160 HOH HOH . E 4 HOH A 127 1227 189 HOH HOH . E 4 HOH A 128 1228 91 HOH HOH . E 4 HOH A 129 1229 67 HOH HOH . E 4 HOH A 130 1230 6 HOH HOH . E 4 HOH A 131 1231 100 HOH HOH . E 4 HOH A 132 1232 193 HOH HOH . E 4 HOH A 133 1233 53 HOH HOH . E 4 HOH A 134 1234 32 HOH HOH . E 4 HOH A 135 1235 104 HOH HOH . E 4 HOH A 136 1236 31 HOH HOH . E 4 HOH A 137 1237 34 HOH HOH . E 4 HOH A 138 1238 88 HOH HOH . E 4 HOH A 139 1239 120 HOH HOH . E 4 HOH A 140 1240 159 HOH HOH . E 4 HOH A 141 1241 118 HOH HOH . E 4 HOH A 142 1242 68 HOH HOH . E 4 HOH A 143 1243 178 HOH HOH . E 4 HOH A 144 1244 148 HOH HOH . E 4 HOH A 145 1245 134 HOH HOH . E 4 HOH A 146 1246 123 HOH HOH . E 4 HOH A 147 1247 117 HOH HOH . E 4 HOH A 148 1248 76 HOH HOH . E 4 HOH A 149 1249 99 HOH HOH . E 4 HOH A 150 1250 163 HOH HOH . E 4 HOH A 151 1251 143 HOH HOH . E 4 HOH A 152 1252 113 HOH HOH . E 4 HOH A 153 1253 141 HOH HOH . E 4 HOH A 154 1254 103 HOH HOH . E 4 HOH A 155 1255 194 HOH HOH . E 4 HOH A 156 1256 129 HOH HOH . E 4 HOH A 157 1257 153 HOH HOH . E 4 HOH A 158 1258 96 HOH HOH . E 4 HOH A 159 1259 112 HOH HOH . E 4 HOH A 160 1260 197 HOH HOH . E 4 HOH A 161 1261 140 HOH HOH . E 4 HOH A 162 1262 190 HOH HOH . E 4 HOH A 163 1263 200 HOH HOH . E 4 HOH A 164 1264 116 HOH HOH . E 4 HOH A 165 1265 198 HOH HOH . E 4 HOH A 166 1266 108 HOH HOH . E 4 HOH A 167 1267 161 HOH HOH . E 4 HOH A 168 1268 139 HOH HOH . E 4 HOH A 169 1269 183 HOH HOH . E 4 HOH A 170 1270 192 HOH HOH . E 4 HOH A 171 1271 195 HOH HOH . E 4 HOH A 172 1272 95 HOH HOH . E 4 HOH A 173 1273 203 HOH HOH . E 4 HOH A 174 1274 201 HOH HOH . E 4 HOH A 175 1275 155 HOH HOH . E 4 HOH A 176 1276 102 HOH HOH . E 4 HOH A 177 1277 169 HOH HOH . E 4 HOH A 178 1278 185 HOH HOH . E 4 HOH A 179 1279 124 HOH HOH . E 4 HOH A 180 1280 106 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol PR _atom_site.label_atom_id PR _atom_site.label_comp_id PR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.925 _atom_site.Cartn_y 20.459 _atom_site.Cartn_z 27.216 _atom_site.occupancy 0.81 _atom_site.B_iso_or_equiv 17.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id PR _atom_site.auth_comp_id PR _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #