data_6K32 # _model_server_result.job_id hw1kjUp-owIp2H46sIOvuw _model_server_result.datetime_utc '2025-03-06 06:48:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1303}' # _entry.id 6K32 # _exptl.entry_id 6K32 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 173.943 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DIPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K32 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 K O5' MG7 . A MG7 1302 1_555 L P1 DPO . A DPO 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 L O7 DPO . A DPO 1303 1_555 M P A2M . A A2M 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.509 ? covale ? covale3 D O5' 3PO 1 p 3PO 1 1_555 D C5' A 2 p A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.162 ? metalc ? metalc1 A OD2 ASP 543 A ASP 547 1_555 J MG MG . A MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 A OD1 ASP 676 A ASP 680 1_555 J MG MG . A MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 A OD2 ASP 676 A ASP 680 1_555 J MG MG . A MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc4 J MG MG . A MG 1301 1_555 O O2B UTP . A UTP 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc5 J MG MG . A MG 1301 1_555 O O1A UTP . A UTP 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc6 N MG MG . A MG 1305 1_555 O O1A UTP . A UTP 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? hydrog WATSON-CRICK hydrog1 C N3 C 4 t C 4 1_555 D N1 G 3 p G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 C N4 C 4 t C 4 1_555 D O6 G 3 p G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 C O2 C 4 t C 4 1_555 D N2 G 3 p G 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog4 C N3 U 5 t U 5 1_555 D N1 A 2 p A 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'O7 P2 -4' _chem_comp.formula_weight 173.943 _chem_comp.id DPO _chem_comp.mon_nstd_flag . _chem_comp.name DIPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 DPO doub 217 n n P1 O2 DPO sing 218 n n P1 O3 DPO sing 219 n n P1 O4 DPO sing 220 n n O4 P2 DPO sing 221 n n P2 O5 DPO doub 222 n n P2 O6 DPO sing 223 n n P2 O7 DPO sing 224 n n # _atom_sites.entry_id 6K32 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 8 MG A 1 1301 1301 MG MG . K 9 MG7 A 1 1302 1302 MG7 MG7 . L 10 DPO A 1 1303 1303 DPO DPO . M 11 A2M A 1 1304 1304 A2M A2M . N 8 MG A 1 1305 1301 MG MG . O 12 UTP A 1 1306 1302 UTP UTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 DPO . . . L 10 -280.857 -320.651 -224.23 1 20 ? P1 DPO 1303 A 1 HETATM 2 O O1 DPO . . . L 10 -279.494 -320.226 -224.612 1 20 ? O1 DPO 1303 A 1 HETATM 3 O O3 DPO . . . L 10 -281.114 -321.176 -222.793 1 20 ? O3 DPO 1303 A 1 HETATM 4 O O4 DPO . . . L 10 -281.443 -319.353 -224.08 1 20 ? O4 DPO 1303 A 1 HETATM 5 P P2 DPO . . . L 10 -281.182 -318.183 -223.228 1 20 ? P2 DPO 1303 A 1 HETATM 6 O O5 DPO . . . L 10 -279.779 -317.832 -223.368 1 20 ? O5 DPO 1303 A 1 HETATM 7 O O6 DPO . . . L 10 -281.608 -318.686 -221.878 1 20 ? O6 DPO 1303 A 1 HETATM 8 O O7 DPO . . . L 10 -282.099 -316.98 -223.42 1 20 ? O7 DPO 1303 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 82 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #