data_6K36 # _model_server_result.job_id xUkJAk9Dk3X7LNfu8rveRA _model_server_result.datetime_utc '2024-11-20 06:28:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k36 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6K36 # _exptl.entry_id 6K36 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(8S)-8-azanylnonanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6K36 _cell.length_a 71.114 _cell.length_b 71.114 _cell.length_c 98.198 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K36 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 32.732667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 146 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 124 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAJ _struct_conn.ptnr2_label_comp_id CWF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CWF _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.479 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H19 N O2' _chem_comp.formula_weight 173.253 _chem_comp.id CWF _chem_comp.mon_nstd_flag . _chem_comp.name '(8S)-8-azanylnonanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAL CWF sing 70 n n NAB CAL CWF sing 71 n n CAL CAJ CWF sing 72 n n CAJ CAH CWF sing 73 n n CAH CAF CWF sing 74 n n CAF CAE CWF sing 75 n n CAE CAG CWF sing 76 n n CAG CAI CWF sing 77 n n CAI CAK CWF sing 78 n n OAC CAK CWF doub 79 n n CAK OAD CWF sing 80 n n OAD H1 CWF sing 81 n n CAI H2 CWF sing 82 n n CAI H3 CWF sing 83 n n CAG H4 CWF sing 84 n n CAG H5 CWF sing 85 n n CAE H6 CWF sing 86 n n CAE H7 CWF sing 87 n n CAF H8 CWF sing 88 n n CAF H9 CWF sing 89 n n CAH H10 CWF sing 90 n n CAH H11 CWF sing 91 n n CAJ H12 CWF sing 92 n n CAJ H13 CWF sing 93 n n CAL H14 CWF sing 94 n n CAA H15 CWF sing 95 n n CAA H16 CWF sing 96 n n CAA H17 CWF sing 97 n n NAB H18 CWF sing 98 n n NAB H19 CWF sing 99 n n # _atom_sites.entry_id 6K36 _atom_sites.fract_transf_matrix[1][1] 0.014062 _atom_sites.fract_transf_matrix[1][2] 0.008119 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CWF A 1 401 401 CWF DRG . C 3 HOH A 1 501 13 HOH HOH . C 3 HOH A 2 502 11 HOH HOH . C 3 HOH A 3 503 1 HOH HOH . C 3 HOH A 4 504 22 HOH HOH . C 3 HOH A 5 505 7 HOH HOH . C 3 HOH A 6 506 5 HOH HOH . C 3 HOH A 7 507 23 HOH HOH . C 3 HOH A 8 508 8 HOH HOH . C 3 HOH A 9 509 14 HOH HOH . C 3 HOH A 10 510 19 HOH HOH . C 3 HOH A 11 511 20 HOH HOH . C 3 HOH A 12 512 21 HOH HOH . C 3 HOH A 13 513 3 HOH HOH . C 3 HOH A 14 514 10 HOH HOH . C 3 HOH A 15 515 25 HOH HOH . C 3 HOH A 16 516 15 HOH HOH . C 3 HOH A 17 517 2 HOH HOH . C 3 HOH A 18 518 24 HOH HOH . C 3 HOH A 19 519 17 HOH HOH . C 3 HOH A 20 520 18 HOH HOH . C 3 HOH A 21 521 16 HOH HOH . C 3 HOH A 22 522 4 HOH HOH . C 3 HOH A 23 523 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC CWF . . . B 2 -12.069 -2.726 11.639 1 57.18 ? OAC CWF 401 A 1 HETATM 2 C CAK CWF . . . B 2 -13.24 -2.249 11.647 1 57.38 ? CAK CWF 401 A 1 HETATM 3 O OAD CWF . . . B 2 -14.154 -2.498 12.48 1 44.85 ? OAD CWF 401 A 1 HETATM 4 C CAI CWF . . . B 2 -13.618 -1.198 10.638 1 61.87 ? CAI CWF 401 A 1 HETATM 5 C CAG CWF . . . B 2 -13.844 -1.78 9.259 1 65.53 ? CAG CWF 401 A 1 HETATM 6 C CAE CWF . . . B 2 -14.733 -0.71 8.633 1 66.3 ? CAE CWF 401 A 1 HETATM 7 C CAF CWF . . . B 2 -15.702 -1.236 7.581 1 66.67 ? CAF CWF 401 A 1 HETATM 8 C CAH CWF . . . B 2 -15.321 -0.755 6.157 1 69.64 ? CAH CWF 401 A 1 HETATM 9 C CAJ CWF . . . B 2 -16.569 -0.407 5.352 1 76.76 ? CAJ CWF 401 A 1 HETATM 10 C CAL CWF . . . B 2 -17.291 -1.706 4.872 1 73.52 ? CAL CWF 401 A 1 HETATM 11 C CAA CWF . . . B 2 -16.372 -2.518 3.95 1 72.38 ? CAA CWF 401 A 1 HETATM 12 N NAB CWF . . . B 2 -18.633 -1.442 4.272 1 69.69 ? NAB CWF 401 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #