data_6K38 # _model_server_result.job_id uQby5FC32aokhoUDDjUNVg _model_server_result.datetime_utc '2024-11-20 04:29:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k38 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6K38 # _exptl.entry_id 6K38 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.253 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(8S)-8-azanylnonanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6K38 _cell.length_a 71.425 _cell.length_b 71.425 _cell.length_c 98.511 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K38 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 32.837 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 146 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 124 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAJ _struct_conn.ptnr2_label_comp_id CWF _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CWF _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.472 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C9 H19 N O2' _chem_comp.formula_weight 173.253 _chem_comp.id CWF _chem_comp.mon_nstd_flag . _chem_comp.name '(8S)-8-azanylnonanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CAL CWF sing 70 n n NAB CAL CWF sing 71 n n CAL CAJ CWF sing 72 n n CAJ CAH CWF sing 73 n n CAH CAF CWF sing 74 n n CAF CAE CWF sing 75 n n CAE CAG CWF sing 76 n n CAG CAI CWF sing 77 n n CAI CAK CWF sing 78 n n OAC CAK CWF doub 79 n n CAK OAD CWF sing 80 n n OAD H1 CWF sing 81 n n CAI H2 CWF sing 82 n n CAI H3 CWF sing 83 n n CAG H4 CWF sing 84 n n CAG H5 CWF sing 85 n n CAE H6 CWF sing 86 n n CAE H7 CWF sing 87 n n CAF H8 CWF sing 88 n n CAF H9 CWF sing 89 n n CAH H10 CWF sing 90 n n CAH H11 CWF sing 91 n n CAJ H12 CWF sing 92 n n CAJ H13 CWF sing 93 n n CAL H14 CWF sing 94 n n CAA H15 CWF sing 95 n n CAA H16 CWF sing 96 n n CAA H17 CWF sing 97 n n NAB H18 CWF sing 98 n n NAB H19 CWF sing 99 n n # _atom_sites.entry_id 6K38 _atom_sites.fract_transf_matrix[1][1] 0.014001 _atom_sites.fract_transf_matrix[1][2] 0.008083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010151 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CWF A 1 401 401 CWF DRG . C 3 HOH A 1 501 12 HOH HOH . C 3 HOH A 2 502 155 HOH HOH . C 3 HOH A 3 503 93 HOH HOH . C 3 HOH A 4 504 165 HOH HOH . C 3 HOH A 5 505 13 HOH HOH . C 3 HOH A 6 506 125 HOH HOH . C 3 HOH A 7 507 156 HOH HOH . C 3 HOH A 8 508 80 HOH HOH . C 3 HOH A 9 509 5 HOH HOH . C 3 HOH A 10 510 40 HOH HOH . C 3 HOH A 11 511 68 HOH HOH . C 3 HOH A 12 512 121 HOH HOH . C 3 HOH A 13 513 101 HOH HOH . C 3 HOH A 14 514 128 HOH HOH . C 3 HOH A 15 515 146 HOH HOH . C 3 HOH A 16 516 82 HOH HOH . C 3 HOH A 17 517 56 HOH HOH . C 3 HOH A 18 518 41 HOH HOH . C 3 HOH A 19 519 126 HOH HOH . C 3 HOH A 20 520 30 HOH HOH . C 3 HOH A 21 521 161 HOH HOH . C 3 HOH A 22 522 14 HOH HOH . C 3 HOH A 23 523 91 HOH HOH . C 3 HOH A 24 524 144 HOH HOH . C 3 HOH A 25 525 29 HOH HOH . C 3 HOH A 26 526 160 HOH HOH . C 3 HOH A 27 527 9 HOH HOH . C 3 HOH A 28 528 122 HOH HOH . C 3 HOH A 29 529 52 HOH HOH . C 3 HOH A 30 530 44 HOH HOH . C 3 HOH A 31 531 20 HOH HOH . C 3 HOH A 32 532 50 HOH HOH . C 3 HOH A 33 533 43 HOH HOH . C 3 HOH A 34 534 31 HOH HOH . C 3 HOH A 35 535 71 HOH HOH . C 3 HOH A 36 536 164 HOH HOH . C 3 HOH A 37 537 63 HOH HOH . C 3 HOH A 38 538 18 HOH HOH . C 3 HOH A 39 539 111 HOH HOH . C 3 HOH A 40 540 159 HOH HOH . C 3 HOH A 41 541 154 HOH HOH . C 3 HOH A 42 542 100 HOH HOH . C 3 HOH A 43 543 92 HOH HOH . C 3 HOH A 44 544 132 HOH HOH . C 3 HOH A 45 545 97 HOH HOH . C 3 HOH A 46 546 24 HOH HOH . C 3 HOH A 47 547 131 HOH HOH . C 3 HOH A 48 548 26 HOH HOH . C 3 HOH A 49 549 23 HOH HOH . C 3 HOH A 50 550 35 HOH HOH . C 3 HOH A 51 551 124 HOH HOH . C 3 HOH A 52 552 77 HOH HOH . C 3 HOH A 53 553 118 HOH HOH . C 3 HOH A 54 554 64 HOH HOH . C 3 HOH A 55 555 57 HOH HOH . C 3 HOH A 56 556 85 HOH HOH . C 3 HOH A 57 557 95 HOH HOH . C 3 HOH A 58 558 99 HOH HOH . C 3 HOH A 59 559 119 HOH HOH . C 3 HOH A 60 560 11 HOH HOH . C 3 HOH A 61 561 152 HOH HOH . C 3 HOH A 62 562 37 HOH HOH . C 3 HOH A 63 563 19 HOH HOH . C 3 HOH A 64 564 2 HOH HOH . C 3 HOH A 65 565 116 HOH HOH . C 3 HOH A 66 566 1 HOH HOH . C 3 HOH A 67 567 114 HOH HOH . C 3 HOH A 68 568 87 HOH HOH . C 3 HOH A 69 569 62 HOH HOH . C 3 HOH A 70 570 39 HOH HOH . C 3 HOH A 71 571 25 HOH HOH . C 3 HOH A 72 572 32 HOH HOH . C 3 HOH A 73 573 49 HOH HOH . C 3 HOH A 74 574 127 HOH HOH . C 3 HOH A 75 575 163 HOH HOH . C 3 HOH A 76 576 140 HOH HOH . C 3 HOH A 77 577 88 HOH HOH . C 3 HOH A 78 578 15 HOH HOH . C 3 HOH A 79 579 98 HOH HOH . C 3 HOH A 80 580 7 HOH HOH . C 3 HOH A 81 581 133 HOH HOH . C 3 HOH A 82 582 79 HOH HOH . C 3 HOH A 83 583 136 HOH HOH . C 3 HOH A 84 584 73 HOH HOH . C 3 HOH A 85 585 143 HOH HOH . C 3 HOH A 86 586 138 HOH HOH . C 3 HOH A 87 587 81 HOH HOH . C 3 HOH A 88 588 149 HOH HOH . C 3 HOH A 89 589 67 HOH HOH . C 3 HOH A 90 590 84 HOH HOH . C 3 HOH A 91 591 22 HOH HOH . C 3 HOH A 92 592 8 HOH HOH . C 3 HOH A 93 593 83 HOH HOH . C 3 HOH A 94 594 89 HOH HOH . C 3 HOH A 95 595 58 HOH HOH . C 3 HOH A 96 596 38 HOH HOH . C 3 HOH A 97 597 66 HOH HOH . C 3 HOH A 98 598 65 HOH HOH . C 3 HOH A 99 599 51 HOH HOH . C 3 HOH A 100 600 55 HOH HOH . C 3 HOH A 101 601 6 HOH HOH . C 3 HOH A 102 602 78 HOH HOH . C 3 HOH A 103 603 115 HOH HOH . C 3 HOH A 104 604 59 HOH HOH . C 3 HOH A 105 605 61 HOH HOH . C 3 HOH A 106 606 107 HOH HOH . C 3 HOH A 107 607 105 HOH HOH . C 3 HOH A 108 608 27 HOH HOH . C 3 HOH A 109 609 16 HOH HOH . C 3 HOH A 110 610 166 HOH HOH . C 3 HOH A 111 611 48 HOH HOH . C 3 HOH A 112 612 28 HOH HOH . C 3 HOH A 113 613 4 HOH HOH . C 3 HOH A 114 614 109 HOH HOH . C 3 HOH A 115 615 76 HOH HOH . C 3 HOH A 116 616 42 HOH HOH . C 3 HOH A 117 617 113 HOH HOH . C 3 HOH A 118 618 104 HOH HOH . C 3 HOH A 119 619 46 HOH HOH . C 3 HOH A 120 620 53 HOH HOH . C 3 HOH A 121 621 3 HOH HOH . C 3 HOH A 122 622 145 HOH HOH . C 3 HOH A 123 623 134 HOH HOH . C 3 HOH A 124 624 10 HOH HOH . C 3 HOH A 125 625 72 HOH HOH . C 3 HOH A 126 626 94 HOH HOH . C 3 HOH A 127 627 123 HOH HOH . C 3 HOH A 128 628 142 HOH HOH . C 3 HOH A 129 629 157 HOH HOH . C 3 HOH A 130 630 21 HOH HOH . C 3 HOH A 131 631 60 HOH HOH . C 3 HOH A 132 632 96 HOH HOH . C 3 HOH A 133 633 17 HOH HOH . C 3 HOH A 134 634 74 HOH HOH . C 3 HOH A 135 635 106 HOH HOH . C 3 HOH A 136 636 135 HOH HOH . C 3 HOH A 137 637 151 HOH HOH . C 3 HOH A 138 638 147 HOH HOH . C 3 HOH A 139 639 120 HOH HOH . C 3 HOH A 140 640 36 HOH HOH . C 3 HOH A 141 641 69 HOH HOH . C 3 HOH A 142 642 112 HOH HOH . C 3 HOH A 143 643 47 HOH HOH . C 3 HOH A 144 644 162 HOH HOH . C 3 HOH A 145 645 34 HOH HOH . C 3 HOH A 146 646 139 HOH HOH . C 3 HOH A 147 647 117 HOH HOH . C 3 HOH A 148 648 158 HOH HOH . C 3 HOH A 149 649 150 HOH HOH . C 3 HOH A 150 650 75 HOH HOH . C 3 HOH A 151 651 141 HOH HOH . C 3 HOH A 152 652 45 HOH HOH . C 3 HOH A 153 653 70 HOH HOH . C 3 HOH A 154 654 153 HOH HOH . C 3 HOH A 155 655 54 HOH HOH . C 3 HOH A 156 656 137 HOH HOH . C 3 HOH A 157 657 90 HOH HOH . C 3 HOH A 158 658 130 HOH HOH . C 3 HOH A 159 659 108 HOH HOH . C 3 HOH A 160 660 110 HOH HOH . C 3 HOH A 161 661 86 HOH HOH . C 3 HOH A 162 662 33 HOH HOH . C 3 HOH A 163 663 102 HOH HOH . C 3 HOH A 164 664 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC CWF . . . B 2 -12.128 -2.452 12.072 1 22.32 ? OAC CWF 401 A 1 HETATM 2 C CAK CWF . . . B 2 -13.252 -2.052 11.619 1 26.5 ? CAK CWF 401 A 1 HETATM 3 O OAD CWF . . . B 2 -14.32 -2.148 12.265 1 26.36 ? OAD CWF 401 A 1 HETATM 4 C CAI CWF . . . B 2 -13.37 -1.167 10.373 1 25.59 ? CAI CWF 401 A 1 HETATM 5 C CAG CWF . . . B 2 -14.426 -1.628 9.357 1 27.66 ? CAG CWF 401 A 1 HETATM 6 C CAE CWF . . . B 2 -14.689 -0.562 8.297 1 26.46 ? CAE CWF 401 A 1 HETATM 7 C CAF CWF . . . B 2 -15.954 -0.862 7.5 1 28.61 ? CAF CWF 401 A 1 HETATM 8 C CAH CWF . . . B 2 -15.865 -0.322 6.055 1 30.37 ? CAH CWF 401 A 1 HETATM 9 C CAJ CWF . . . B 2 -17.212 -0.472 5.374 1 33.96 ? CAJ CWF 401 A 1 HETATM 10 C CAL CWF . . . B 2 -17.512 -1.934 4.959 1 33.6 ? CAL CWF 401 A 1 HETATM 11 C CAA CWF . . . B 2 -16.393 -2.514 4.109 1 35.82 ? CAA CWF 401 A 1 HETATM 12 N NAB CWF . . . B 2 -18.768 -1.958 4.193 1 36.17 ? NAB CWF 401 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #