data_6K3E # _model_server_result.job_id InocqOsadjE4IaNg2rJttA _model_server_result.datetime_utc '2025-02-05 06:06:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 6K3E # _exptl.entry_id 6K3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.507 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'piperidin-4-ylmethyl 4-fluoranyl-4-[[[(1~{R},2~{S})-2-phenylcyclopropyl]amino]methyl]piperidine-1-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K3E _cell.length_a 121.51 _cell.length_b 179.44 _cell.length_c 234.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H32 F N3 O2' _chem_comp.formula_weight 389.507 _chem_comp.id CW0 _chem_comp.mon_nstd_flag . _chem_comp.name 'piperidin-4-ylmethyl 4-fluoranyl-4-[[[(1~{R},2~{S})-2-phenylcyclopropyl]amino]methyl]piperidine-1-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C26 CW0 doub 76 n y C27 C28 CW0 sing 77 n y C26 C25 CW0 sing 78 n y C28 C23 CW0 doub 79 n y C25 C24 CW0 doub 80 n y C23 C24 CW0 sing 81 n y C23 C21 CW0 sing 82 n n C21 C22 CW0 sing 83 n n C21 C20 CW0 sing 84 n n C22 C20 CW0 sing 85 n n C20 N19 CW0 sing 86 n n N19 C17 CW0 sing 87 n n C17 C14 CW0 sing 88 n n C13 C14 CW0 sing 89 n n C13 C12 CW0 sing 90 n n C14 F18 CW0 sing 91 n n C14 C15 CW0 sing 92 n n C15 C16 CW0 sing 93 n n C12 N10 CW0 sing 94 n n C16 N10 CW0 sing 95 n n N10 C9 CW0 sing 96 n n C9 O8 CW0 sing 97 n n C9 O11 CW0 doub 98 n n O8 C7 CW0 sing 99 n n C7 C4 CW0 sing 100 n n C5 C4 CW0 sing 101 n n C5 C6 CW0 sing 102 n n C4 C3 CW0 sing 103 n n C6 N1 CW0 sing 104 n n C3 C2 CW0 sing 105 n n N1 C2 CW0 sing 106 n n N1 H1 CW0 sing 107 n n C4 H3 CW0 sing 108 n n C5 H4 CW0 sing 109 n n C5 H5 CW0 sing 110 n n C6 H6 CW0 sing 111 n n C6 H7 CW0 sing 112 n n C7 H8 CW0 sing 113 n n C7 H9 CW0 sing 114 n n C13 H10 CW0 sing 115 n n C13 H11 CW0 sing 116 n n C15 H12 CW0 sing 117 n n C15 H13 CW0 sing 118 n n C17 H14 CW0 sing 119 n n C17 H15 CW0 sing 120 n n C20 H16 CW0 sing 121 n n C21 H17 CW0 sing 122 n n C22 H18 CW0 sing 123 n n C22 H19 CW0 sing 124 n n C24 H20 CW0 sing 125 n n C26 H21 CW0 sing 126 n n C28 H22 CW0 sing 127 n n C2 H23 CW0 sing 128 n n C2 H24 CW0 sing 129 n n C3 H25 CW0 sing 130 n n C3 H26 CW0 sing 131 n n C12 H27 CW0 sing 132 n n C12 H28 CW0 sing 133 n n C16 H29 CW0 sing 134 n n C16 H30 CW0 sing 135 n n N19 H31 CW0 sing 136 n n C25 H33 CW0 sing 137 n n C27 H34 CW0 sing 138 n n # _atom_sites.entry_id 6K3E _atom_sites.fract_transf_matrix[1][1] 0.00823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CW0 A 1 901 1 CW0 LIG . D 4 DTT A 1 902 1 DTT DTT . E 5 ACT A 1 903 1 ACT ACT . F 5 ACT A 1 904 2 ACT ACT . G 6 MLA A 1 905 1 MLA MLA . H 6 MLA A 1 906 2 MLA MLA . I 6 MLA A 1 907 3 MLA MLA . J 7 GOL A 1 908 1 GOL GOL . K 7 GOL A 1 909 2 GOL GOL . L 7 GOL A 1 910 3 GOL GOL . M 7 GOL A 1 911 4 GOL GOL . N 8 D3U A 1 912 1 D3U DRG . O 9 EDO A 1 913 1 EDO EDO . P 9 EDO A 1 914 2 EDO EDO . Q 9 EDO A 1 915 3 EDO EDO . R 9 EDO A 1 916 4 EDO EDO . S 9 EDO A 1 917 5 EDO EDO . T 9 EDO A 1 918 6 EDO EDO . U 9 EDO A 1 919 7 EDO EDO . V 9 EDO A 1 920 8 EDO EDO . W 9 EDO A 1 921 9 EDO EDO . X 9 EDO A 1 922 10 EDO EDO . Y 9 EDO A 1 923 11 EDO EDO . Z 9 EDO A 1 924 12 EDO EDO . AA 10 PEG A 1 925 1 PEG PEG . BA 10 PEG A 1 926 2 PEG PEG . CA 10 PEG A 1 927 3 PEG PEG . DA 11 CL A 1 928 1 CL CL . EA 11 CL A 1 929 2 CL CL . FA 12 HOH A 1 1001 5 HOH HOH . FA 12 HOH A 2 1002 6 HOH HOH . FA 12 HOH A 3 1003 2 HOH HOH . FA 12 HOH A 4 1004 7 HOH HOH . FA 12 HOH A 5 1005 3 HOH HOH . FA 12 HOH A 6 1006 1 HOH HOH . FA 12 HOH A 7 1007 4 HOH HOH . FA 12 HOH A 8 1008 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CW0 . A . C 3 -6.316 45.496 75.036 1 171.72 ? N1 CW0 901 A 1 HETATM 2 C C4 CW0 . A . C 3 -6.934 47.896 76.453 1 175.88 ? C4 CW0 901 A 1 HETATM 3 C C5 CW0 . A . C 3 -5.906 46.914 77.058 1 173.56 ? C5 CW0 901 A 1 HETATM 4 C C6 CW0 . A . C 3 -6.248 45.513 76.521 1 168.95 ? C6 CW0 901 A 1 HETATM 5 C C7 CW0 . A . C 3 -6.829 49.278 77.087 1 182.73 ? C7 CW0 901 A 1 HETATM 6 C C13 CW0 . A . C 3 -6.538 49.714 81.998 1 176.19 ? C13 CW0 901 A 1 HETATM 7 C C15 CW0 . A . C 3 -5.745 51.777 80.934 1 149.87 ? C15 CW0 901 A 1 HETATM 8 C C17 CW0 . A . C 3 -4.289 50.449 82.825 1 133.71 ? C17 CW0 901 A 1 HETATM 9 C C20 CW0 . A . C 3 -1.946 51.257 83.728 1 162.35 ? C20 CW0 901 A 1 HETATM 10 C C21 CW0 . A . C 3 -1.729 51.887 85.138 1 170.52 ? C21 CW0 901 A 1 HETATM 11 C C22 CW0 . A . C 3 -1.798 50.355 84.972 1 165.05 ? C22 CW0 901 A 1 HETATM 12 C C24 CW0 . A . C 3 -0.462 54.057 85.556 1 152.15 ? C24 CW0 901 A 1 HETATM 13 C C26 CW0 . A . C 3 1.896 54.243 86.174 1 160.6 ? C26 CW0 901 A 1 HETATM 14 C C28 CW0 . A . C 3 0.802 52.061 85.792 1 181.54 ? C28 CW0 901 A 1 HETATM 15 C C2 CW0 . A . C 3 -7.017 46.607 74.335 1 167.1 ? C2 CW0 901 A 1 HETATM 16 C C3 CW0 . A . C 3 -6.736 47.996 74.936 1 156.19 ? C3 CW0 901 A 1 HETATM 17 O O8 CW0 . A . C 3 -8.129 49.689 77.639 1 195.77 ? O8 CW0 901 A 1 HETATM 18 C C9 CW0 . A . C 3 -8.352 49.557 78.976 1 185.67 ? C9 CW0 901 A 1 HETATM 19 N N10 CW0 . A . C 3 -7.651 50.348 79.915 1 184.2 ? N10 CW0 901 A 1 HETATM 20 O O11 CW0 . A . C 3 -9.211 48.701 79.284 1 133.65 ? O11 CW0 901 A 1 HETATM 21 C C12 CW0 . A . C 3 -7.869 50.179 81.344 1 182.43 ? C12 CW0 901 A 1 HETATM 22 C C14 CW0 . A . C 3 -5.25 50.461 81.567 1 159.42 ? C14 CW0 901 A 1 HETATM 23 C C16 CW0 . A . C 3 -6.622 51.421 79.682 1 157.26 ? C16 CW0 901 A 1 HETATM 24 F F18 CW0 . A . C 3 -4.639 49.755 80.503 1 192.26 ? F18 CW0 901 A 1 HETATM 25 N N19 CW0 . A . C 3 -3.246 51.498 82.967 1 132.76 ? N19 CW0 901 A 1 HETATM 26 C C23 CW0 . A . C 3 -0.431 52.656 85.492 1 170.24 ? C23 CW0 901 A 1 HETATM 27 C C25 CW0 . A . C 3 0.678 54.829 85.872 1 163.49 ? C25 CW0 901 A 1 HETATM 28 C C27 CW0 . A . C 3 1.932 52.851 86.123 1 191.77 ? C27 CW0 901 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #