data_6K3E # _model_server_result.job_id FolvK4Jma_cVYVWEHijJaA _model_server_result.datetime_utc '2025-02-05 05:49:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":902}' # _entry.id 6K3E # _exptl.entry_id 6K3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-1,4-DITHIOBUTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K3E _cell.length_a 121.51 _cell.length_b 179.44 _cell.length_c 234.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id DTT _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-1,4-DITHIOBUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,4-DITHIOTHREITOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C1 DTT sing 262 n n S1 HS1 DTT sing 263 n n C1 C2 DTT sing 264 n n C1 H11 DTT sing 265 n n C1 H12 DTT sing 266 n n C2 O2 DTT sing 267 n n C2 C3 DTT sing 268 n n C2 H2 DTT sing 269 n n O2 HO2 DTT sing 270 n n C3 O3 DTT sing 271 n n C3 C4 DTT sing 272 n n C3 H3 DTT sing 273 n n O3 HO3 DTT sing 274 n n C4 S4 DTT sing 275 n n C4 H41 DTT sing 276 n n C4 H42 DTT sing 277 n n S4 HS2 DTT sing 278 n n # _atom_sites.entry_id 6K3E _atom_sites.fract_transf_matrix[1][1] 0.00823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CW0 A 1 901 1 CW0 LIG . D 4 DTT A 1 902 1 DTT DTT . E 5 ACT A 1 903 1 ACT ACT . F 5 ACT A 1 904 2 ACT ACT . G 6 MLA A 1 905 1 MLA MLA . H 6 MLA A 1 906 2 MLA MLA . I 6 MLA A 1 907 3 MLA MLA . J 7 GOL A 1 908 1 GOL GOL . K 7 GOL A 1 909 2 GOL GOL . L 7 GOL A 1 910 3 GOL GOL . M 7 GOL A 1 911 4 GOL GOL . N 8 D3U A 1 912 1 D3U DRG . O 9 EDO A 1 913 1 EDO EDO . P 9 EDO A 1 914 2 EDO EDO . Q 9 EDO A 1 915 3 EDO EDO . R 9 EDO A 1 916 4 EDO EDO . S 9 EDO A 1 917 5 EDO EDO . T 9 EDO A 1 918 6 EDO EDO . U 9 EDO A 1 919 7 EDO EDO . V 9 EDO A 1 920 8 EDO EDO . W 9 EDO A 1 921 9 EDO EDO . X 9 EDO A 1 922 10 EDO EDO . Y 9 EDO A 1 923 11 EDO EDO . Z 9 EDO A 1 924 12 EDO EDO . AA 10 PEG A 1 925 1 PEG PEG . BA 10 PEG A 1 926 2 PEG PEG . CA 10 PEG A 1 927 3 PEG PEG . DA 11 CL A 1 928 1 CL CL . EA 11 CL A 1 929 2 CL CL . FA 12 HOH A 1 1001 5 HOH HOH . FA 12 HOH A 2 1002 6 HOH HOH . FA 12 HOH A 3 1003 2 HOH HOH . FA 12 HOH A 4 1004 7 HOH HOH . FA 12 HOH A 5 1005 3 HOH HOH . FA 12 HOH A 6 1006 1 HOH HOH . FA 12 HOH A 7 1007 4 HOH HOH . FA 12 HOH A 8 1008 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 DTT . . . D 4 -0.08 59.585 112.873 1 197.26 ? S1 DTT 902 A 1 HETATM 2 C C1 DTT . . . D 4 -1.839 60.032 112.861 1 200.96 ? C1 DTT 902 A 1 HETATM 3 C C2 DTT . . . D 4 -2.508 60.529 114.136 1 191.28 ? C2 DTT 902 A 1 HETATM 4 O O2 DTT . . . D 4 -1.655 60.444 115.3 1 160.37 ? O2 DTT 902 A 1 HETATM 5 C C3 DTT . . . D 4 -3.835 59.79 114.414 1 196.94 ? C3 DTT 902 A 1 HETATM 6 O O3 DTT . . . D 4 -4.317 60.13 115.718 1 159.37 ? O3 DTT 902 A 1 HETATM 7 C C4 DTT . . . D 4 -4.883 60.056 113.347 1 217.45 ? C4 DTT 902 A 1 HETATM 8 S S4 DTT . . . D 4 -6.578 60.432 113.882 1 226.56 ? S4 DTT 902 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #