data_6K3E # _model_server_result.job_id n-Q1vxwkTdUjP3aQijQFOg _model_server_result.datetime_utc '2025-02-05 06:04:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k3e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":907}' # _entry.id 6K3E # _exptl.entry_id 6K3E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.061 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K3E _cell.length_a 121.51 _cell.length_b 179.44 _cell.length_c 234.41 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K3E _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N # _chem_comp.formula 'C3 H4 O4' _chem_comp.formula_weight 104.061 _chem_comp.id MLA _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A MLA sing 455 n n C1 O1B MLA doub 456 n n C1 C2 MLA sing 457 n n O1A H1A MLA sing 458 n n C2 C3 MLA sing 459 n n C2 HC21 MLA sing 460 n n C2 HC22 MLA sing 461 n n C3 O3A MLA doub 462 n n C3 O3B MLA sing 463 n n O3B H3B MLA sing 464 n n # _atom_sites.entry_id 6K3E _atom_sites.fract_transf_matrix[1][1] 0.00823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CW0 A 1 901 1 CW0 LIG . D 4 DTT A 1 902 1 DTT DTT . E 5 ACT A 1 903 1 ACT ACT . F 5 ACT A 1 904 2 ACT ACT . G 6 MLA A 1 905 1 MLA MLA . H 6 MLA A 1 906 2 MLA MLA . I 6 MLA A 1 907 3 MLA MLA . J 7 GOL A 1 908 1 GOL GOL . K 7 GOL A 1 909 2 GOL GOL . L 7 GOL A 1 910 3 GOL GOL . M 7 GOL A 1 911 4 GOL GOL . N 8 D3U A 1 912 1 D3U DRG . O 9 EDO A 1 913 1 EDO EDO . P 9 EDO A 1 914 2 EDO EDO . Q 9 EDO A 1 915 3 EDO EDO . R 9 EDO A 1 916 4 EDO EDO . S 9 EDO A 1 917 5 EDO EDO . T 9 EDO A 1 918 6 EDO EDO . U 9 EDO A 1 919 7 EDO EDO . V 9 EDO A 1 920 8 EDO EDO . W 9 EDO A 1 921 9 EDO EDO . X 9 EDO A 1 922 10 EDO EDO . Y 9 EDO A 1 923 11 EDO EDO . Z 9 EDO A 1 924 12 EDO EDO . AA 10 PEG A 1 925 1 PEG PEG . BA 10 PEG A 1 926 2 PEG PEG . CA 10 PEG A 1 927 3 PEG PEG . DA 11 CL A 1 928 1 CL CL . EA 11 CL A 1 929 2 CL CL . FA 12 HOH A 1 1001 5 HOH HOH . FA 12 HOH A 2 1002 6 HOH HOH . FA 12 HOH A 3 1003 2 HOH HOH . FA 12 HOH A 4 1004 7 HOH HOH . FA 12 HOH A 5 1005 3 HOH HOH . FA 12 HOH A 6 1006 1 HOH HOH . FA 12 HOH A 7 1007 4 HOH HOH . FA 12 HOH A 8 1008 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLA . . . I 6 4.437 35.649 57.893 1 180.45 ? C1 MLA 907 A 1 HETATM 2 O O1A MLA . . . I 6 5.305 35.374 58.76 1 174.59 ? O1A MLA 907 A 1 HETATM 3 O O1B MLA . . . I 6 3.212 35.45 58.09 1 149.52 ? O1B MLA 907 A 1 HETATM 4 C C2 MLA . . . I 6 4.884 36.232 56.558 1 180.17 ? C2 MLA 907 A 1 HETATM 5 C C3 MLA . . . I 6 4.802 37.748 56.578 1 177.42 ? C3 MLA 907 A 1 HETATM 6 O O3A MLA . . . I 6 4.131 38.355 55.706 1 159.44 ? O3A MLA 907 A 1 HETATM 7 O O3B MLA . . . I 6 5.42 38.349 57.482 1 174.92 ? O3B MLA 907 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 467 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #