data_6K3E
#
_model_server_result.job_id            PVgltSj2JNtjCWRUY_w7LQ 
_model_server_result.datetime_utc      '2025-02-05 06:02:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k3e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":912}' 
#
_entry.id    6K3E 
#
_exptl.entry_id    6K3E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              901.71 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-PCPA derivative' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K3E 
_cell.length_a            121.51 
_cell.length_b            179.44 
_cell.length_c            234.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K3E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             N 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C36 H41 N9 O15 P2' 
_chem_comp.formula_weight    901.71 
_chem_comp.id                D3U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-PCPA derivative' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAF CAE D3U sing 152 n n 
CAE CAG D3U doub 153 n y 
CAE CAC D3U sing 154 n y 
CAG CAH D3U sing 155 n y 
CCC CCD D3U doub 156 n n 
CCC NAI D3U sing 157 n n 
CCD CCB D3U sing 158 n n 
CAD CAC D3U sing 159 n n 
CAC CAB D3U doub 160 n y 
CAH NAI D3U sing 161 n n 
CAH CAA D3U doub 162 n y 
NAI CAJ D3U sing 163 n n 
OAL CAK D3U doub 164 n n 
CCB CAJ D3U sing 165 n n 
CCB CCE D3U sing 166 n n 
CAB CAA D3U sing 167 n y 
CAA NAR D3U sing 168 n n 
CAJ CAK D3U sing 169 n n 
CAJ CAQ D3U sing 170 n n 
CAK NAM D3U sing 171 n n 
CCE CCF D3U doub 172 n y 
CCE CCJ D3U sing 173 n y 
CCF CCG D3U sing 174 n y 
CCJ CCI D3U doub 175 n y 
NAR CAQ D3U sing 176 n n 
NAR CAS D3U sing 177 n n 
CAQ NAP D3U doub 178 n n 
NAM CAN D3U sing 179 n n 
CCG CCH D3U doub 180 n y 
CCI CCH D3U sing 181 n y 
OAU CAT D3U sing 182 n n 
CAS CAT D3U sing 183 n n 
NAP CAN D3U sing 184 n n 
CAN OAO D3U doub 185 n n 
CAT CAV D3U sing 186 n n 
O2' C2' D3U sing 187 n n 
CAV OAW D3U sing 188 n n 
CAV CAX D3U sing 189 n n 
OAY CAX D3U sing 190 n n 
OBG PBF D3U doub 191 n n 
C2' C3' D3U sing 192 n n 
C2' C1' D3U sing 193 n n 
CAX CAZ D3U sing 194 n n 
C8 N7 D3U doub 195 n y 
C8 N9 D3U sing 196 n y 
OBH PBF D3U sing 197 n n 
C3' O3' D3U sing 198 n n 
C3' C4' D3U sing 199 n n 
N7 C5 D3U sing 200 n y 
PBF O5' D3U sing 201 n n 
PBF OBE D3U sing 202 n n 
N9 C1' D3U sing 203 n n 
N9 C4 D3U sing 204 n y 
CAZ OBA D3U sing 205 n n 
C1' O4' D3U sing 206 n n 
C5 C4 D3U doub 207 n y 
C5 C6 D3U sing 208 n y 
N6 C6 D3U sing 209 n n 
C4 N3 D3U sing 210 n y 
C6 N1 D3U doub 211 n y 
O5' C5' D3U sing 212 n n 
OBE PBB D3U sing 213 n n 
OBA PBB D3U sing 214 n n 
C4' O4' D3U sing 215 n n 
C4' C5' D3U sing 216 n n 
N3 C2 D3U doub 217 n y 
N1 C2 D3U sing 218 n y 
PBB OBD D3U doub 219 n n 
PBB OBC D3U sing 220 n n 
C8 H1 D3U sing 221 n n 
NAM H2 D3U sing 222 n n 
CCB H3 D3U sing 223 n n 
CCF H4 D3U sing 224 n n 
CCG H5 D3U sing 225 n n 
CCH H6 D3U sing 226 n n 
CCI H7 D3U sing 227 n n 
CCJ H8 D3U sing 228 n n 
CCD H9 D3U sing 229 n n 
CCC H10 D3U sing 230 n n 
CAG H11 D3U sing 231 n n 
CAF H12 D3U sing 232 n n 
CAF H13 D3U sing 233 n n 
CAF H14 D3U sing 234 n n 
CAD H15 D3U sing 235 n n 
CAD H16 D3U sing 236 n n 
CAD H17 D3U sing 237 n n 
CAB H18 D3U sing 238 n n 
CAS H19 D3U sing 239 n n 
CAS H20 D3U sing 240 n n 
CAT H21 D3U sing 241 n n 
OAU H22 D3U sing 242 n n 
CAV H23 D3U sing 243 n n 
OAW H24 D3U sing 244 n n 
CAX H25 D3U sing 245 n n 
OAY H26 D3U sing 246 n n 
CAZ H27 D3U sing 247 n n 
CAZ H28 D3U sing 248 n n 
OBC H29 D3U sing 249 n n 
OBH H30 D3U sing 250 n n 
C5' H31 D3U sing 251 n n 
C5' H32 D3U sing 252 n n 
C4' H33 D3U sing 253 n n 
C3' H34 D3U sing 254 n n 
O3' H35 D3U sing 255 n n 
C2' H36 D3U sing 256 n n 
O2' H37 D3U sing 257 n n 
C1' H38 D3U sing 258 n n 
C2 H39 D3U sing 259 n n 
N6 H40 D3U sing 260 n n 
N6 H41 D3U sing 261 n n 
#
_atom_sites.entry_id                     6K3E 
_atom_sites.fract_transf_matrix[1][1]    0.00823 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005573 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004266 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CW0 A 1 901 1 CW0 LIG . 
D 4 DTT A 1 902 1 DTT DTT . 
E 5 ACT A 1 903 1 ACT ACT . 
F 5 ACT A 1 904 2 ACT ACT . 
G 6 MLA A 1 905 1 MLA MLA . 
H 6 MLA A 1 906 2 MLA MLA . 
I 6 MLA A 1 907 3 MLA MLA . 
J 7 GOL A 1 908 1 GOL GOL . 
K 7 GOL A 1 909 2 GOL GOL . 
L 7 GOL A 1 910 3 GOL GOL . 
M 7 GOL A 1 911 4 GOL GOL . 
N 8 D3U A 1 912 1 D3U DRG . 
O 9 EDO A 1 913 1 EDO EDO . 
P 9 EDO A 1 914 2 EDO EDO . 
Q 9 EDO A 1 915 3 EDO EDO . 
R 9 EDO A 1 916 4 EDO EDO . 
S 9 EDO A 1 917 5 EDO EDO . 
T 9 EDO A 1 918 6 EDO EDO . 
U 9 EDO A 1 919 7 EDO EDO . 
V 9 EDO A 1 920 8 EDO EDO . 
W 9 EDO A 1 921 9 EDO EDO . 
X 9 EDO A 1 922 10 EDO EDO . 
Y 9 EDO A 1 923 11 EDO EDO . 
Z 9 EDO A 1 924 12 EDO EDO . 
AA 10 PEG A 1 925 1 PEG PEG . 
BA 10 PEG A 1 926 2 PEG PEG . 
CA 10 PEG A 1 927 3 PEG PEG . 
DA 11 CL A 1 928 1 CL CL . 
EA 11 CL A 1 929 2 CL CL . 
FA 12 HOH A 1 1001 5 HOH HOH . 
FA 12 HOH A 2 1002 6 HOH HOH . 
FA 12 HOH A 3 1003 2 HOH HOH . 
FA 12 HOH A 4 1004 7 HOH HOH . 
FA 12 HOH A 5 1005 3 HOH HOH . 
FA 12 HOH A 6 1006 1 HOH HOH . 
FA 12 HOH A 7 1007 4 HOH HOH . 
FA 12 HOH A 8 1008 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 D3U . . . N 8 -4.551 75.682 88.939 1 69.02 ? C4 D3U 912 A 1 
HETATM 2 C C5 D3U . . . N 8 -3.304 76.176 88.629 1 78.56 ? C5 D3U 912 A 1 
HETATM 3 C C6 D3U . . . N 8 -2.835 77.377 89.072 1 79.16 ? C6 D3U 912 A 1 
HETATM 4 C C8 D3U . . . N 8 -3.509 74.243 87.713 1 67.45 ? C8 D3U 912 A 1 
HETATM 5 N N1 D3U . . . N 8 -3.614 78.122 89.867 1 60.03 ? N1 D3U 912 A 1 
HETATM 6 N N3 D3U . . . N 8 -5.44 76.365 89.704 1 63.07 ? N3 D3U 912 A 1 
HETATM 7 O OAL D3U . . . N 8 -9.29 56.92 81.45 1 111.84 ? OAL D3U 912 A 1 
HETATM 8 C CAK D3U . . . N 8 -8.863 57.307 82.574 1 106.49 ? CAK D3U 912 A 1 
HETATM 9 N NAM D3U . . . N 8 -9.151 56.659 83.868 1 102.26 ? NAM D3U 912 A 1 
HETATM 10 C CAN D3U . . . N 8 -8.565 57.085 85.145 1 103.13 ? CAN D3U 912 A 1 
HETATM 11 O OAO D3U . . . N 8 -8.95 56.609 86.257 1 91.59 ? OAO D3U 912 A 1 
HETATM 12 N NAP D3U . . . N 8 -7.641 58.086 85.033 1 85.95 ? NAP D3U 912 A 1 
HETATM 13 C CAQ D3U . . . N 8 -7.298 58.593 83.802 1 91 ? CAQ D3U 912 A 1 
HETATM 14 C CAJ D3U . . . N 8 -7.677 57.935 82.546 1 104.05 ? CAJ D3U 912 A 1 
HETATM 15 C CCB D3U . . . N 8 -7.052 56.485 82.036 1 109.01 ? CCB D3U 912 A 1 
HETATM 16 C CCE D3U . . . N 8 -6.297 55.683 82.97 1 98.75 ? CCE D3U 912 A 1 
HETATM 17 C CCF D3U . . . N 8 -4.977 55.914 83.261 1 102.69 ? CCF D3U 912 A 1 
HETATM 18 C CCG D3U . . . N 8 -4.337 55.083 84.228 1 112.3 ? CCG D3U 912 A 1 
HETATM 19 C CCH D3U . . . N 8 -4.968 54.01 84.883 1 91.21 ? CCH D3U 912 A 1 
HETATM 20 C CCI D3U . . . N 8 -6.287 53.733 84.549 1 76.96 ? CCI D3U 912 A 1 
HETATM 21 C CCJ D3U . . . N 8 -6.916 54.563 83.611 1 94.48 ? CCJ D3U 912 A 1 
HETATM 22 C CCD D3U . . . N 8 -6.418 56.59 80.803 1 96.26 ? CCD D3U 912 A 1 
HETATM 23 C CCC D3U . . . N 8 -6.496 57.814 80.409 1 95.63 ? CCC D3U 912 A 1 
HETATM 24 N NAI D3U . . . N 8 -7.143 58.586 81.305 1 111.93 ? NAI D3U 912 A 1 
HETATM 25 C CAH D3U . . . N 8 -6.82 59.829 81.293 1 105.14 ? CAH D3U 912 A 1 
HETATM 26 C CAG D3U . . . N 8 -6.711 60.503 80.097 1 105 ? CAG D3U 912 A 1 
HETATM 27 C CAE D3U . . . N 8 -6.26 61.787 80.062 1 104.25 ? CAE D3U 912 A 1 
HETATM 28 C CAF D3U . . . N 8 -6.263 62.413 78.821 1 103.22 ? CAF D3U 912 A 1 
HETATM 29 C CAC D3U . . . N 8 -5.85 62.385 81.244 1 113.77 ? CAC D3U 912 A 1 
HETATM 30 C CAD D3U . . . N 8 -5.379 63.713 81.193 1 114.46 ? CAD D3U 912 A 1 
HETATM 31 C CAB D3U . . . N 8 -5.911 61.671 82.459 1 99.62 ? CAB D3U 912 A 1 
HETATM 32 C CAA D3U . . . N 8 -6.304 60.329 82.508 1 99.13 ? CAA D3U 912 A 1 
HETATM 33 N NAR D3U . . . N 8 -6.444 59.674 83.724 1 101.8 ? NAR D3U 912 A 1 
HETATM 34 C CAS D3U . . . N 8 -5.893 60.251 85.051 1 101.33 ? CAS D3U 912 A 1 
HETATM 35 C CAT D3U . . . N 8 -6.883 61.25 85.802 1 96.59 ? CAT D3U 912 A 1 
HETATM 36 O OAU D3U . . . N 8 -7.569 62.07 84.864 1 85.84 ? OAU D3U 912 A 1 
HETATM 37 C CAV D3U . . . N 8 -6.209 62.274 86.754 1 87.34 ? CAV D3U 912 A 1 
HETATM 38 O OAW D3U . . . N 8 -5.315 61.668 87.654 1 80.25 ? OAW D3U 912 A 1 
HETATM 39 C CAX D3U . . . N 8 -7.243 62.924 87.651 1 92.53 ? CAX D3U 912 A 1 
HETATM 40 O OAY D3U . . . N 8 -8.354 63.462 86.922 1 103.59 ? OAY D3U 912 A 1 
HETATM 41 C CAZ D3U . . . N 8 -6.525 64.014 88.465 1 93.54 ? CAZ D3U 912 A 1 
HETATM 42 O OBA D3U . . . N 8 -7.394 64.956 89.222 1 88.86 ? OBA D3U 912 A 1 
HETATM 43 P PBB D3U . . . N 8 -6.326 65.921 90.173 1 72.58 ? PBB D3U 912 A 1 
HETATM 44 O OBD D3U . . . N 8 -5.173 64.991 90.824 1 53.14 ? OBD D3U 912 A 1 
HETATM 45 O OBC D3U . . . N 8 -7.081 66.741 91.193 1 89.04 ? OBC D3U 912 A 1 
HETATM 46 O OBE D3U . . . N 8 -5.419 66.92 89.134 1 67.84 ? OBE D3U 912 A 1 
HETATM 47 P PBF D3U . . . N 8 -6.206 67.982 88.209 1 69.18 ? PBF D3U 912 A 1 
HETATM 48 O OBH D3U . . . N 8 -7.766 67.188 87.84 1 65.81 ? OBH D3U 912 A 1 
HETATM 49 O OBG D3U . . . N 8 -5.292 68.527 87.131 1 72.88 ? OBG D3U 912 A 1 
HETATM 50 O O5' D3U . . . N 8 -6.841 69.202 89.11 1 81.79 ? O5' D3U 912 A 1 
HETATM 51 C C5' D3U . . . N 8 -6.018 70.284 89.517 1 79.19 ? C5' D3U 912 A 1 
HETATM 52 C C4' D3U . . . N 8 -6.643 71.644 89.231 1 80.06 ? C4' D3U 912 A 1 
HETATM 53 O O4' D3U . . . N 8 -5.447 72.537 89.302 1 75.53 ? O4' D3U 912 A 1 
HETATM 54 C C3' D3U . . . N 8 -7.223 71.776 87.829 1 82.56 ? C3' D3U 912 A 1 
HETATM 55 O O3' D3U . . . N 8 -8.644 72.268 87.856 1 88.56 ? O3' D3U 912 A 1 
HETATM 56 C C2' D3U . . . N 8 -6.207 72.779 87.243 1 76.95 ? C2' D3U 912 A 1 
HETATM 57 O O2' D3U . . . N 8 -6.778 73.574 86.242 1 69.89 ? O2' D3U 912 A 1 
HETATM 58 C C1' D3U . . . N 8 -5.838 73.618 88.468 1 73.67 ? C1' D3U 912 A 1 
HETATM 59 N N9 D3U . . . N 8 -4.65 74.489 88.354 1 68.81 ? N9 D3U 912 A 1 
HETATM 60 N N7 D3U . . . N 8 -2.673 75.28 87.87 1 67.99 ? N7 D3U 912 A 1 
HETATM 61 C C2 D3U . . . N 8 -4.982 77.615 90.169 1 66.79 ? C2 D3U 912 A 1 
HETATM 62 N N6 D3U . . . N 8 -1.599 77.74 88.648 1 81.75 ? N6 D3U 912 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           62 
#