data_6K3Y # _model_server_result.job_id n12J8n2yrRmJRKSyX3Utsg _model_server_result.datetime_utc '2025-01-08 19:54:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 6K3Y # _exptl.entry_id 6K3Y _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 674.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog TYPE_6_PAIR hydrog1 A N1 DG 3 A DG 3 1_555 A O6 DG 6 A DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 DG 3 A DG 3 1_555 A N7 DG 6 A DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N7 DG 3 A DG 3 1_555 A N2 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A O6 DG 3 A DG 3 1_555 A N1 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N1 DG 4 A DG 4 1_555 A O6 DG 7 A DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A N2 DG 4 A DG 4 1_555 A N7 DG 7 A DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N7 DG 4 A DG 4 1_555 A N2 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A O6 DG 4 A DG 4 1_555 A N1 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N1 DG 6 A DG 6 1_555 A O6 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A N2 DG 6 A DG 6 1_555 A N7 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N1 DG 7 A DG 7 1_555 A O6 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A N2 DG 7 A DG 7 1_555 A N7 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N1 DG 8 A DG 8 1_555 A O6 DG 12 A DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A N2 DG 8 A DG 8 1_555 A N7 DG 12 A DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N1 DG 10 A DG 10 1_555 A O6 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A N2 DG 10 A DG 10 1_555 A N7 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 A N1 DG 11 A DG 11 1_555 A O6 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 A N2 DG 11 A DG 11 1_555 A N7 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 A N1 DG 12 A DG 12 1_555 A O6 DG 16 A DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 A N2 DG 12 A DG 12 1_555 A N7 DG 16 A DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C20 H24 N10 O13 P2' _chem_comp.formula_weight 674.411 _chem_comp.id 4BW _chem_comp.mon_nstd_flag . _chem_comp.name "2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "3',3' cGAMP;c-GMP-AMP;c[G(3',5')pA(3',5')p]" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA CBA 4BW sing 1 n n CBA NAS 4BW doub 2 n n CBA NAT 4BW sing 3 n n NAS CBG 4BW sing 4 n n NAT CBC 4BW sing 5 n n OAG CBI 4BW sing 6 n n CBG NBQ 4BW sing 7 n y CBG CBE 4BW doub 8 n y CBC CBE 4BW sing 9 n n CBC OAC 4BW doub 10 n n OAI PBS 4BW doub 11 n n CBI CBO 4BW sing 12 n n CBI CBM 4BW sing 13 n n CBO NBQ 4BW sing 14 n n CBO OAX 4BW sing 15 n n NBQ CAL 4BW sing 16 n y CBE NAR 4BW sing 17 n y OAE PBS 4BW sing 18 n n OAX CBK 4BW sing 19 n n PBS OAZ 4BW sing 20 n n PBS O5' 4BW sing 21 n n OAZ CBM 4BW sing 22 n n CBM CBK 4BW sing 23 n n CAL NAR 4BW doub 24 n y CBK CAN 4BW sing 25 n n N6 C6 4BW sing 26 n n N7 C8 4BW doub 27 n y N7 C5 4BW sing 28 n y O5' C5' 4BW sing 29 n n C8 N9 4BW sing 30 n y C6 C5 4BW doub 31 n y C6 N1 4BW sing 32 n y C5 C4 4BW sing 33 n y CAN OAV 4BW sing 34 n n C5' C4' 4BW sing 35 n n OAV PBR 4BW sing 36 n n N9 C4 4BW sing 37 n y N9 C1' 4BW sing 38 n n N1 C2 4BW doub 39 n y C4 N3 4BW doub 40 n y O4' C4' 4BW sing 41 n n O4' C1' 4BW sing 42 n n C4' C3' 4BW sing 43 n n C3' C2' 4BW sing 44 n n C3' O3' 4BW sing 45 n n C1' C2' 4BW sing 46 n n C2 N3 4BW sing 47 n y PBR OAD 4BW doub 48 n n PBR O3' 4BW sing 49 n n PBR OAH 4BW sing 50 n n C2' O2' 4BW sing 51 n n NAT H1 4BW sing 52 n n NAA H2 4BW sing 53 n n NAA H3 4BW sing 54 n n CAL H4 4BW sing 55 n n CBO H5 4BW sing 56 n n CBI H6 4BW sing 57 n n OAG H7 4BW sing 58 n n CBK H8 4BW sing 59 n n CAN H9 4BW sing 60 n n CAN H10 4BW sing 61 n n OAH H11 4BW sing 62 n n CBM H12 4BW sing 63 n n OAE H13 4BW sing 64 n n C5' H14 4BW sing 65 n n C5' H15 4BW sing 66 n n C4' H16 4BW sing 67 n n C3' H17 4BW sing 68 n n C2' H18 4BW sing 69 n n O2' H19 4BW sing 70 n n C1' H20 4BW sing 71 n n C8 H21 4BW sing 72 n n C2 H22 4BW sing 73 n n N6 H23 4BW sing 74 n n N6 H24 4BW sing 75 n n # _atom_sites.entry_id 6K3Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 4BW _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 4BW _pdbx_nonpoly_scheme.auth_mon_id 4BW _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC 4BW . . . B 2 -0.222 -4.349 -0.699 1 0 ? OAC 4BW 101 A 1 HETATM 2 C CBC 4BW . . . B 2 -1.328 -4.729 -1.036 1 0 ? CBC 4BW 101 A 1 HETATM 3 N NAT 4BW . . . B 2 -1.924 -4.337 -2.23 1 0 ? NAT 4BW 101 A 1 HETATM 4 C CBA 4BW . . . B 2 -3.192 -4.761 -2.619 1 0 ? CBA 4BW 101 A 1 HETATM 5 N NAA 4BW . . . B 2 -3.656 -4.282 -3.82 1 0 ? NAA 4BW 101 A 1 HETATM 6 N NAS 4BW . . . B 2 -3.947 -5.59 -1.891 1 0 ? NAS 4BW 101 A 1 HETATM 7 C CBG 4BW . . . B 2 -3.41 -6.037 -0.678 1 0 ? CBG 4BW 101 A 1 HETATM 8 C CBE 4BW . . . B 2 -2.167 -5.643 -0.235 1 0 ? CBE 4BW 101 A 1 HETATM 9 N NAR 4BW . . . B 2 -1.879 -6.208 0.981 1 0 ? NAR 4BW 101 A 1 HETATM 10 C CAL 4BW . . . B 2 -2.945 -6.943 1.267 1 0 ? CAL 4BW 101 A 1 HETATM 11 N NBQ 4BW . . . B 2 -3.917 -6.894 0.277 1 0 ? NBQ 4BW 101 A 1 HETATM 12 C CBO 4BW . . . B 2 -5.185 -7.652 0.314 1 0 ? CBO 4BW 101 A 1 HETATM 13 C CBI 4BW . . . B 2 -5.906 -7.846 -1.027 1 0 ? CBI 4BW 101 A 1 HETATM 14 O OAG 4BW . . . B 2 -7.247 -8.242 -0.746 1 0 ? OAG 4BW 101 A 1 HETATM 15 O OAX 4BW . . . B 2 -4.826 -8.993 0.719 1 0 ? OAX 4BW 101 A 1 HETATM 16 C CBK 4BW . . . B 2 -4.909 -9.917 -0.386 1 0 ? CBK 4BW 101 A 1 HETATM 17 C CAN 4BW . . . B 2 -3.613 -10.753 -0.488 1 0 ? CAN 4BW 101 A 1 HETATM 18 O OAV 4BW . . . B 2 -2.573 -10.03 -1.161 1 0 ? OAV 4BW 101 A 1 HETATM 19 P PBR 4BW . . . B 2 -1.333 -10.868 -1.774 1 0 ? PBR 4BW 101 A 1 HETATM 20 O O3' 4BW . . . B 2 -2.11 -11.596 -2.989 1 0 ? O3' 4BW 101 A 1 HETATM 21 O OAH 4BW . . . B 2 -0.258 -9.975 -2.28 1 0 ? OAH 4BW 101 A 1 HETATM 22 O OAD 4BW . . . B 2 -0.782 -11.843 -0.797 1 0 ? OAD 4BW 101 A 1 HETATM 23 C CBM 4BW . . . B 2 -5.161 -9.028 -1.606 1 0 ? CBM 4BW 101 A 1 HETATM 24 O OAZ 4BW . . . B 2 -5.967 -9.713 -2.574 1 0 ? OAZ 4BW 101 A 1 HETATM 25 P PBS 4BW . . . B 2 -6.209 -9.038 -4.021 1 0 ? PBS 4BW 101 A 1 HETATM 26 O OAI 4BW . . . B 2 -7.293 -8.02 -3.992 1 0 ? OAI 4BW 101 A 1 HETATM 27 O OAE 4BW . . . B 2 -6.464 -10.059 -5.071 1 0 ? OAE 4BW 101 A 1 HETATM 28 O O5' 4BW . . . B 2 -4.755 -8.362 -4.23 1 0 ? O5' 4BW 101 A 1 HETATM 29 C C5' 4BW . . . B 2 -3.687 -9.014 -4.932 1 0 ? C5' 4BW 101 A 1 HETATM 30 C C4' 4BW . . . B 2 -3.616 -10.507 -4.555 1 0 ? C4' 4BW 101 A 1 HETATM 31 O O4' 4BW . . . B 2 -4.09 -11.31 -5.649 1 0 ? O4' 4BW 101 A 1 HETATM 32 C C3' 4BW . . . B 2 -2.177 -10.972 -4.279 1 0 ? C3' 4BW 101 A 1 HETATM 33 C C2' 4BW . . . B 2 -1.842 -11.987 -5.376 1 0 ? C2' 4BW 101 A 1 HETATM 34 O O2' 4BW . . . B 2 -1.849 -13.311 -4.846 1 0 ? O2' 4BW 101 A 1 HETATM 35 C C1' 4BW . . . B 2 -2.986 -11.858 -6.387 1 0 ? C1' 4BW 101 A 1 HETATM 36 N N9 4BW . . . B 2 -2.682 -10.951 -7.501 1 0 ? N9 4BW 101 A 1 HETATM 37 C C8 4BW . . . B 2 -3.252 -10.955 -8.777 1 0 ? C8 4BW 101 A 1 HETATM 38 N N7 4BW . . . B 2 -2.748 -10.015 -9.583 1 0 ? N7 4BW 101 A 1 HETATM 39 C C5 4BW . . . B 2 -1.841 -9.406 -8.792 1 0 ? C5 4BW 101 A 1 HETATM 40 C C4 4BW . . . B 2 -1.762 -9.935 -7.513 1 0 ? C4 4BW 101 A 1 HETATM 41 N N3 4BW . . . B 2 -0.906 -9.452 -6.574 1 0 ? N3 4BW 101 A 1 HETATM 42 C C2 4BW . . . B 2 -0.111 -8.41 -6.94 1 0 ? C2 4BW 101 A 1 HETATM 43 N N1 4BW . . . B 2 -0.119 -7.83 -8.171 1 0 ? N1 4BW 101 A 1 HETATM 44 C C6 4BW . . . B 2 -0.985 -8.327 -9.099 1 0 ? C6 4BW 101 A 1 HETATM 45 N N6 4BW . . . B 2 -0.988 -7.734 -10.352 1 0 ? N6 4BW 101 A 1 HETATM 46 H H1 4BW . . . B 2 -1.402 -3.716 -2.835 1 0 ? H1 4BW 101 A 1 HETATM 47 H H2 4BW . . . B 2 -4.574 -4.552 -4.15 1 0 ? H2 4BW 101 A 1 HETATM 48 H H3 4BW . . . B 2 -3.079 -3.659 -4.371 1 0 ? H3 4BW 101 A 1 HETATM 49 H H4 4BW . . . B 2 -3.078 -7.537 2.162 1 0 ? H4 4BW 101 A 1 HETATM 50 H H5 4BW . . . B 2 -5.866 -7.202 1.047 1 0 ? H5 4BW 101 A 1 HETATM 51 H H6 4BW . . . B 2 -5.859 -6.97 -1.681 1 0 ? H6 4BW 101 A 1 HETATM 52 H H7 4BW . . . B 2 -7.719 -7.454 -0.423 1 0 ? H7 4BW 101 A 1 HETATM 53 H H8 4BW . . . B 2 -5.772 -10.567 -0.206 1 0 ? H8 4BW 101 A 1 HETATM 54 H H9 4BW . . . B 2 -3.823 -11.663 -1.066 1 0 ? H9 4BW 101 A 1 HETATM 55 H H10 4BW . . . B 2 -3.294 -11.045 0.518 1 0 ? H10 4BW 101 A 1 HETATM 56 H H12 4BW . . . B 2 -4.207 -8.683 -2.025 1 0 ? H12 4BW 101 A 1 HETATM 57 H H14 4BW . . . B 2 -3.85 -8.928 -6.013 1 0 ? H14 4BW 101 A 1 HETATM 58 H H15 4BW . . . B 2 -2.741 -8.513 -4.69 1 0 ? H15 4BW 101 A 1 HETATM 59 H H16 4BW . . . B 2 -4.235 -10.714 -3.68 1 0 ? H16 4BW 101 A 1 HETATM 60 H H17 4BW . . . B 2 -1.485 -10.122 -4.342 1 0 ? H17 4BW 101 A 1 HETATM 61 H H18 4BW . . . B 2 -0.881 -11.743 -5.85 1 0 ? H18 4BW 101 A 1 HETATM 62 H H19 4BW . . . B 2 -1.569 -13.908 -5.561 1 0 ? H19 4BW 101 A 1 HETATM 63 H H20 4BW . . . B 2 -3.259 -12.843 -6.791 1 0 ? H20 4BW 101 A 1 HETATM 64 H H21 4BW . . . B 2 -4.019 -11.668 -9.049 1 0 ? H21 4BW 101 A 1 HETATM 65 H H22 4BW . . . B 2 0.58 -8.016 -6.198 1 0 ? H22 4BW 101 A 1 HETATM 66 H H23 4BW . . . B 2 -0.362 -6.964 -10.55 1 0 ? H23 4BW 101 A 1 HETATM 67 H H24 4BW . . . B 2 -1.611 -8.075 -11.073 1 0 ? H24 4BW 101 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 2865 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 67 #