data_6K4G # _model_server_result.job_id XkdAYdAZaUpv0dzxQW2l-Q _model_server_result.datetime_utc '2024-11-25 08:48:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k4g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6K4G # _exptl.entry_id 6K4G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K4G _cell.length_a 109.782 _cell.length_b 184.625 _cell.length_c 105.849 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K4G _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6K4G _atom_sites.fract_transf_matrix[1][1] 0.009109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNP A 1 501 501 GNP GNP . D 2 GNP A 1 502 502 GNP GNP . E 2 GNP B 1 501 501 GNP GNP . F 3 HOH A 1 601 3 HOH HOH . F 3 HOH A 2 602 2 HOH HOH . F 3 HOH A 3 603 8 HOH HOH . F 3 HOH A 4 604 1 HOH HOH . G 3 HOH B 1 601 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 2 42.788 65.279 -9.622 1 158.56 ? PG GNP 501 A 1 HETATM 2 O O1G GNP . . . C 2 41.983 65.254 -8.354 1 146.08 ? O1G GNP 501 A 1 HETATM 3 O O2G GNP . . . C 2 42.496 66.613 -10.321 1 157.32 ? O2G GNP 501 A 1 HETATM 4 O O3G GNP . . . C 2 42.345 64.09 -10.525 1 151.79 ? O3G GNP 501 A 1 HETATM 5 N N3B GNP . . . C 2 44.469 65.151 -9.256 1 143.8 ? N3B GNP 501 A 1 HETATM 6 P PB GNP . . . C 2 45.492 63.931 -9.734 1 139.56 ? PB GNP 501 A 1 HETATM 7 O O1B GNP . . . C 2 45.2 63.413 -11.124 1 135.92 ? O1B GNP 501 A 1 HETATM 8 O O2B GNP . . . C 2 46.892 64.506 -9.69 1 137.9 ? O2B GNP 501 A 1 HETATM 9 O O3A GNP . . . C 2 45.358 62.634 -8.719 1 130.26 ? O3A GNP 501 A 1 HETATM 10 P PA GNP . . . C 2 46.18 62.36 -7.369 1 126.61 ? PA GNP 501 A 1 HETATM 11 O O1A GNP . . . C 2 46.932 61.04 -7.549 1 121.75 ? O1A GNP 501 A 1 HETATM 12 O O2A GNP . . . C 2 47.131 63.451 -7.045 1 126.98 ? O2A GNP 501 A 1 HETATM 13 O O5' GNP . . . C 2 45.04 62.27 -6.248 1 114.43 ? O5' GNP 501 A 1 HETATM 14 C C5' GNP . . . C 2 43.634 62.305 -6.585 1 113.56 ? C5' GNP 501 A 1 HETATM 15 C C4' GNP . . . C 2 42.779 62.647 -5.38 1 106.75 ? C4' GNP 501 A 1 HETATM 16 O O4' GNP . . . C 2 42.74 61.538 -4.451 1 98.82 ? O4' GNP 501 A 1 HETATM 17 C C3' GNP . . . C 2 43.232 63.849 -4.555 1 107.1 ? C3' GNP 501 A 1 HETATM 18 O O3' GNP . . . C 2 42.134 64.542 -3.967 1 108.25 ? O3' GNP 501 A 1 HETATM 19 C C2' GNP . . . C 2 44.144 63.209 -3.504 1 98.01 ? C2' GNP 501 A 1 HETATM 20 O O2' GNP . . . C 2 44.195 64.007 -2.327 1 95.9 ? O2' GNP 501 A 1 HETATM 21 C C1' GNP . . . C 2 43.461 61.856 -3.267 1 95.03 ? C1' GNP 501 A 1 HETATM 22 N N9 GNP . . . C 2 44.418 60.766 -2.999 1 86.83 ? N9 GNP 501 A 1 HETATM 23 C C8 GNP . . . C 2 45.552 60.466 -3.705 1 87.71 ? C8 GNP 501 A 1 HETATM 24 N N7 GNP . . . C 2 46.197 59.426 -3.231 1 82.19 ? N7 GNP 501 A 1 HETATM 25 C C5 GNP . . . C 2 45.438 59.025 -2.143 1 79.27 ? C5 GNP 501 A 1 HETATM 26 C C6 GNP . . . C 2 45.619 57.94 -1.203 1 76.34 ? C6 GNP 501 A 1 HETATM 27 O O6 GNP . . . C 2 46.526 57.117 -1.166 1 74.56 ? O6 GNP 501 A 1 HETATM 28 N N1 GNP . . . C 2 44.609 57.892 -0.268 1 74.76 ? N1 GNP 501 A 1 HETATM 29 C C2 GNP . . . C 2 43.545 58.749 -0.218 1 76.3 ? C2 GNP 501 A 1 HETATM 30 N N2 GNP . . . C 2 42.66 58.549 0.754 1 72.66 ? N2 GNP 501 A 1 HETATM 31 N N3 GNP . . . C 2 43.365 59.751 -1.077 1 80.46 ? N3 GNP 501 A 1 HETATM 32 C C4 GNP . . . C 2 44.343 59.838 -1.994 1 81.64 ? C4 GNP 501 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 32 #