data_6K4G
#
_model_server_result.job_id            RE9yxs52xpQ5MSQdE9w12w 
_model_server_result.datetime_utc      '2024-11-25 08:33:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k4g 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
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_entry.id    6K4G 
#
_exptl.entry_id    6K4G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K4G 
_cell.length_a            109.782 
_cell.length_b            184.625 
_cell.length_c            105.849 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 6K4G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     6K4G 
_atom_sites.fract_transf_matrix[1][1]    0.009109 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005416 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009447 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GNP A 1 501 501 GNP GNP . 
D 2 GNP A 1 502 502 GNP GNP . 
E 2 GNP B 1 501 501 GNP GNP . 
F 3 HOH A 1 601 3 HOH HOH . 
F 3 HOH A 2 602 2 HOH HOH . 
F 3 HOH A 3 603 8 HOH HOH . 
F 3 HOH A 4 604 1 HOH HOH . 
G 3 HOH B 1 601 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . D 2 45.995 46.159 -27.327 1 116.2 ? PG GNP 502 A 1 
HETATM 2 O O1G GNP . . . D 2 45.393 47.547 -27.216 1 102.79 ? O1G GNP 502 A 1 
HETATM 3 O O2G GNP . . . D 2 46.624 45.97 -28.714 1 109.47 ? O2G GNP 502 A 1 
HETATM 4 O O3G GNP . . . D 2 44.849 45.102 -27.181 1 106.86 ? O3G GNP 502 A 1 
HETATM 5 N N3B GNP . . . D 2 47.169 45.919 -26.08 1 100.25 ? N3B GNP 502 A 1 
HETATM 6 P PB GNP . . . D 2 48.722 46.503 -26.118 1 105.58 ? PB GNP 502 A 1 
HETATM 7 O O1B GNP . . . D 2 49.635 45.288 -26.041 1 94.58 ? O1B GNP 502 A 1 
HETATM 8 O O2B GNP . . . D 2 48.924 47.319 -27.374 1 109.09 ? O2B GNP 502 A 1 
HETATM 9 O O3A GNP . . . D 2 49.106 47.573 -24.932 1 93.76 ? O3A GNP 502 A 1 
HETATM 10 P PA GNP . . . D 2 48.53 47.628 -23.442 1 88.24 ? PA GNP 502 A 1 
HETATM 11 O O1A GNP . . . D 2 47.196 48.374 -23.535 1 87.41 ? O1A GNP 502 A 1 
HETATM 12 O O2A GNP . . . D 2 48.583 46.295 -22.791 1 79.66 ? O2A GNP 502 A 1 
HETATM 13 O O5' GNP . . . D 2 49.562 48.526 -22.682 1 81.03 ? O5' GNP 502 A 1 
HETATM 14 C C5' GNP . . . D 2 49.394 49.956 -22.602 1 85.3 ? C5' GNP 502 A 1 
HETATM 15 C C4' GNP . . . D 2 50.766 50.585 -22.691 1 91.15 ? C4' GNP 502 A 1 
HETATM 16 O O4' GNP . . . D 2 51.722 49.814 -21.923 1 93.49 ? O4' GNP 502 A 1 
HETATM 17 C C3' GNP . . . D 2 51.337 50.725 -24.105 1 91.28 ? C3' GNP 502 A 1 
HETATM 18 O O3' GNP . . . D 2 51.727 52.071 -24.342 1 94.92 ? O3' GNP 502 A 1 
HETATM 19 C C2' GNP . . . D 2 52.529 49.757 -24.119 1 91.41 ? C2' GNP 502 A 1 
HETATM 20 O O2' GNP . . . D 2 53.594 50.268 -24.909 1 92.84 ? O2' GNP 502 A 1 
HETATM 21 C C1' GNP . . . D 2 52.928 49.705 -22.644 1 90.38 ? C1' GNP 502 A 1 
HETATM 22 N N9 GNP . . . D 2 53.567 48.433 -22.269 1 89.73 ? N9 GNP 502 A 1 
HETATM 23 C C8 GNP . . . D 2 52.946 47.216 -22.208 1 89.56 ? C8 GNP 502 A 1 
HETATM 24 N N7 GNP . . . D 2 53.75 46.241 -21.849 1 92.25 ? N7 GNP 502 A 1 
HETATM 25 C C5 GNP . . . D 2 54.979 46.857 -21.674 1 92.54 ? C5 GNP 502 A 1 
HETATM 26 C C6 GNP . . . D 2 56.264 46.319 -21.285 1 93.08 ? C6 GNP 502 A 1 
HETATM 27 O O6 GNP . . . D 2 56.526 45.148 -21.016 1 94.48 ? O6 GNP 502 A 1 
HETATM 28 N N1 GNP . . . D 2 57.238 47.296 -21.208 1 92.55 ? N1 GNP 502 A 1 
HETATM 29 C C2 GNP . . . D 2 57.041 48.623 -21.483 1 96.44 ? C2 GNP 502 A 1 
HETATM 30 N N2 GNP . . . D 2 58.098 49.432 -21.353 1 97.39 ? N2 GNP 502 A 1 
HETATM 31 N N3 GNP . . . D 2 55.858 49.133 -21.848 1 97.34 ? N3 GNP 502 A 1 
HETATM 32 C C4 GNP . . . D 2 54.883 48.205 -21.922 1 93.25 ? C4 GNP 502 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           32 
#