data_6K4H # _model_server_result.job_id HviaArg7RJWyJ_oGvxth1A _model_server_result.datetime_utc '2024-11-04 23:00:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k4h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6K4H # _exptl.entry_id 6K4H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K4H _cell.length_a 108.637 _cell.length_b 182.98 _cell.length_c 105.999 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K4H _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6K4H _atom_sites.fract_transf_matrix[1][1] 0.009205 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005465 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 501 501 ANP ANP . D 2 ANP A 1 502 502 ANP ANP . E 2 ANP B 1 501 501 ANP ANP . F 3 HOH A 1 601 6 HOH HOH . F 3 HOH A 2 602 4 HOH HOH . G 3 HOH B 1 601 5 HOH HOH . G 3 HOH B 2 602 7 HOH HOH . G 3 HOH B 3 603 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 2 54.668 47.08 -22.207 1 158.58 ? PG ANP 502 A 1 HETATM 2 O O1G ANP . . . D 2 55.307 48.26 -21.554 1 159.55 ? O1G ANP 502 A 1 HETATM 3 O O2G ANP . . . D 2 55.34 46.87 -23.621 1 164.61 ? O2G ANP 502 A 1 HETATM 4 O O3G ANP . . . D 2 54.939 45.791 -21.327 1 158.31 ? O3G ANP 502 A 1 HETATM 5 P PB ANP . . . D 2 52.424 48.816 -22.846 1 151.61 ? PB ANP 502 A 1 HETATM 6 O O1B ANP . . . D 2 53.07 49.857 -21.997 1 151.62 ? O1B ANP 502 A 1 HETATM 7 O O2B ANP . . . D 2 52.714 49.152 -24.347 1 151.19 ? O2B ANP 502 A 1 HETATM 8 N N3B ANP . . . D 2 52.989 47.286 -22.398 1 154.44 ? N3B ANP 502 A 1 HETATM 9 P PA ANP . . . D 2 49.812 49.834 -23.175 1 138.09 ? PA ANP 502 A 1 HETATM 10 O O1A ANP . . . D 2 49.417 50.885 -22.209 1 142.68 ? O1A ANP 502 A 1 HETATM 11 O O2A ANP . . . D 2 50.515 50.483 -24.383 1 137.5 ? O2A ANP 502 A 1 HETATM 12 O O3A ANP . . . D 2 50.876 48.799 -22.571 1 150.99 ? O3A ANP 502 A 1 HETATM 13 O O5' ANP . . . D 2 48.465 48.958 -23.476 1 98.1 ? O5' ANP 502 A 1 HETATM 14 C C5' ANP . . . D 2 48.28 47.578 -23.174 1 74.64 ? C5' ANP 502 A 1 HETATM 15 C C4' ANP . . . D 2 48.436 46.736 -24.422 1 96.54 ? C4' ANP 502 A 1 HETATM 16 O O4' ANP . . . D 2 47.182 46.127 -24.796 1 116.53 ? O4' ANP 502 A 1 HETATM 17 C C3' ANP . . . D 2 48.882 47.391 -25.719 1 91.66 ? C3' ANP 502 A 1 HETATM 18 O O3' ANP . . . D 2 50.282 47.603 -25.782 1 110.51 ? O3' ANP 502 A 1 HETATM 19 C C2' ANP . . . D 2 48.556 46.292 -26.707 1 87.31 ? C2' ANP 502 A 1 HETATM 20 O O2' ANP . . . D 2 49.408 45.188 -26.458 1 87.42 ? O2' ANP 502 A 1 HETATM 21 C C1' ANP . . . D 2 47.207 45.828 -26.187 1 106.92 ? C1' ANP 502 A 1 HETATM 22 N N9 ANP . . . D 2 46.108 46.519 -26.833 1 116.42 ? N9 ANP 502 A 1 HETATM 23 C C8 ANP . . . D 2 45.978 47.87 -27.018 1 118.68 ? C8 ANP 502 A 1 HETATM 24 N N7 ANP . . . D 2 44.884 48.221 -27.648 1 120.56 ? N7 ANP 502 A 1 HETATM 25 C C5 ANP . . . D 2 44.247 47.013 -27.892 1 118.9 ? C5 ANP 502 A 1 HETATM 26 C C6 ANP . . . D 2 43.032 46.697 -28.527 1 118.35 ? C6 ANP 502 A 1 HETATM 27 N N6 ANP . . . D 2 42.214 47.613 -29.052 1 115.03 ? N6 ANP 502 A 1 HETATM 28 N N1 ANP . . . D 2 42.686 45.388 -28.601 1 122.03 ? N1 ANP 502 A 1 HETATM 29 C C2 ANP . . . D 2 43.508 44.472 -28.077 1 120.23 ? C2 ANP 502 A 1 HETATM 30 N N3 ANP . . . D 2 44.678 44.653 -27.461 1 119.61 ? N3 ANP 502 A 1 HETATM 31 C C4 ANP . . . D 2 44.992 45.955 -27.401 1 118.42 ? C4 ANP 502 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #