data_6K4M
#
_model_server_result.job_id            H-c5f2zdW9KbanqXUQ4xtw 
_model_server_result.datetime_utc      '2024-11-09 23:23:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"MA","auth_seq_id":301}' 
#
_entry.id    6K4M 
#
_exptl.entry_id    6K4M 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K4M 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    24-meric 
_pdbx_struct_assembly.oligomeric_count      24 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 Z N N 
? 3 CA N N 
? 3 FA N N 
? 3 JA N N 
? 3 MA N N 
? 3 PA N N 
? 3 UA N N 
? 3 WA N N 
? 3 ZA N N 
? 3 CB N N 
? 3 FB N N 
? 3 GB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 51 A GLU 51 1_555 Y FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc2 A OE2 GLU 127 A GLU 127 1_555 Y FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc3 C OE1 GLU 51 C GLU 51 1_555 BA FE FE2 . C FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc4 D OE1 GLU 51 D GLU 51 1_555 DA FE FE2 . D FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
metalc ? metalc5 E OE1 GLU 51 F GLU 51 1_555 EA FE FE2 . F FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc6 F OE1 GLU 51 E GLU 51 1_555 GA FE FE2 . E FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? 
metalc ? metalc7 F OE2 GLU 51 E GLU 51 1_555 GA FE FE2 . E FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
metalc ? metalc8 F OE2 GLU 127 E GLU 127 1_555 GA FE FE2 . E FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc9 G OE1 GLU 51 G GLU 51 1_555 HA FE FE2 . G FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc10 H OE1 GLU 51 H GLU 51 1_555 IA FE FE2 . H FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc11 H OE2 GLU 127 H GLU 127 1_555 IA FE FE2 . H FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
metalc ? metalc12 I OE1 GLU 51 I GLU 51 1_555 KA FE FE2 . I FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? 
metalc ? metalc13 K OE1 GLU 51 K GLU 51 1_555 NA FE FE2 . K FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? 
metalc ? metalc14 M OE1 GLU 51 M GLU 51 1_555 QA FE FE2 . M FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc15 N OE1 GLU 51 N GLU 51 1_555 RA FE FE2 . N FE2 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? 
metalc ? metalc16 O SD MET 52 O MET 52 1_555 UA FE HEM . P HEM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc17 R OE1 GLU 51 R GLU 51 1_555 XA FE FE2 . R FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? 
metalc ? metalc18 S OE1 GLU 51 S GLU 51 1_555 YA FE FE2 . S FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? 
metalc ? metalc19 X OE1 GLU 51 X GLU 51 1_555 HB FE FE2 . X FE2 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     6K4M 
_atom_sites.fract_transf_matrix[1][1]    0.003754 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.003754 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003754 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 2 FE2 A 1 201 201 FE2 FE2 . 
Z 3 HEM A 1 202 301 HEM HEM . 
AA 2 FE2 B 1 200 200 FE2 FE2 . 
BA 2 FE2 C 1 201 201 FE2 FE2 . 
CA 3 HEM C 1 202 301 HEM HEM . 
DA 2 FE2 D 1 201 201 FE2 FE2 . 
EA 2 FE2 F 1 201 200 FE2 FE2 . 
FA 3 HEM F 1 202 301 HEM HEM . 
GA 2 FE2 E 1 201 201 FE2 FE2 . 
HA 2 FE2 G 1 201 201 FE2 FE2 . 
IA 2 FE2 H 1 201 201 FE2 FE2 . 
JA 3 HEM H 1 202 301 HEM HEM . 
KA 2 FE2 I 1 201 201 FE2 FE2 . 
LA 2 FE2 J 1 201 201 FE2 FE2 . 
MA 3 HEM K 1 301 301 HEM HEM . 
NA 2 FE2 K 1 302 200 FE2 FE2 . 
OA 2 FE2 L 1 201 201 FE2 FE2 . 
PA 3 HEM L 1 202 301 HEM HEM . 
QA 2 FE2 M 1 201 201 FE2 FE2 . 
RA 2 FE2 N 1 200 200 FE2 FE2 . 
SA 2 FE2 O 1 201 201 FE2 FE2 . 
TA 2 FE2 P 1 201 200 FE2 FE2 . 
UA 3 HEM P 1 202 301 HEM HEM . 
VA 2 FE2 Q 1 201 201 FE2 FE2 . 
WA 3 HEM R 1 301 301 HEM HEM . 
XA 2 FE2 R 1 302 201 FE2 FE2 . 
YA 2 FE2 S 1 201 200 FE2 FE2 . 
ZA 3 HEM S 1 202 301 HEM HEM . 
AB 2 FE2 T 1 201 201 FE2 FE2 . 
BB 2 FE2 U 1 201 200 FE2 FE2 . 
CB 3 HEM U 1 202 301 HEM HEM . 
DB 2 FE2 V 1 201 201 FE2 FE2 . 
EB 2 FE2 W 1 201 201 FE2 FE2 . 
FB 3 HEM W 1 202 301 HEM HEM . 
GB 3 HEM X 1 301 301 HEM HEM . 
HB 2 FE2 X 1 302 200 FE2 FE2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . MA 3 100.802 101.913 131.925 1 473.02 ? CHA HEM 301 K 1 
HETATM 2 C CHB HEM . . . MA 3 103.277 100.334 135.745 1 473.02 ? CHB HEM 301 K 1 
HETATM 3 C CHC HEM . . . MA 3 106.177 104.168 135.374 1 473.02 ? CHC HEM 301 K 1 
HETATM 4 C CHD HEM . . . MA 3 103.523 105.914 131.774 1 473.02 ? CHD HEM 301 K 1 
HETATM 5 C C1A HEM . . . MA 3 101.223 101.157 132.982 1 473.02 ? C1A HEM 301 K 1 
HETATM 6 C C2A HEM . . . MA 3 100.632 99.917 133.412 1 473.02 ? C2A HEM 301 K 1 
HETATM 7 C C3A HEM . . . MA 3 101.305 99.478 134.467 1 473.02 ? C3A HEM 301 K 1 
HETATM 8 C C4A HEM . . . MA 3 102.357 100.427 134.738 1 473.02 ? C4A HEM 301 K 1 
HETATM 9 C CMA HEM . . . MA 3 101.021 98.185 135.257 1 473.02 ? CMA HEM 301 K 1 
HETATM 10 C CAA HEM . . . MA 3 99.417 99.24 132.762 1 473.02 ? CAA HEM 301 K 1 
HETATM 11 C CBA HEM . . . MA 3 98.176 99.909 133.337 1 473.02 ? CBA HEM 301 K 1 
HETATM 12 C CGA HEM . . . MA 3 97.304 100.378 132.206 1 473.02 ? CGA HEM 301 K 1 
HETATM 13 O O1A HEM . . . MA 3 97.619 100.041 131.038 1 473.02 ? O1A HEM 301 K 1 
HETATM 14 O O2A HEM . . . MA 3 96.297 101.081 132.475 1 473.02 ? O2A HEM 301 K 1 
HETATM 15 C C1B HEM . . . MA 3 104.217 101.291 136.024 1 473.02 ? C1B HEM 301 K 1 
HETATM 16 C C2B HEM . . . MA 3 104.993 101.371 137.241 1 473.02 ? C2B HEM 301 K 1 
HETATM 17 C C3B HEM . . . MA 3 105.809 102.441 137.135 1 473.02 ? C3B HEM 301 K 1 
HETATM 18 C C4B HEM . . . MA 3 105.546 103.047 135.85 1 473.02 ? C4B HEM 301 K 1 
HETATM 19 C CMB HEM . . . MA 3 104.826 100.337 138.381 1 473.02 ? CMB HEM 301 K 1 
HETATM 20 C CAB HEM . . . MA 3 106.869 103.068 138.086 1 473.02 ? CAB HEM 301 K 1 
HETATM 21 C CBB HEM . . . MA 3 107.125 102.747 139.361 1 473.02 ? CBB HEM 301 K 1 
HETATM 22 C C1C HEM . . . MA 3 105.637 105.038 134.465 1 473.02 ? C1C HEM 301 K 1 
HETATM 23 C C2C HEM . . . MA 3 105.956 106.447 134.343 1 473.02 ? C2C HEM 301 K 1 
HETATM 24 C C3C HEM . . . MA 3 105.207 106.947 133.331 1 473.02 ? C3C HEM 301 K 1 
HETATM 25 C C4C HEM . . . MA 3 104.417 105.845 132.811 1 473.02 ? C4C HEM 301 K 1 
HETATM 26 C CMC HEM . . . MA 3 106.986 107.131 135.277 1 473.02 ? CMC HEM 301 K 1 
HETATM 27 C CAC HEM . . . MA 3 105.092 108.371 132.707 1 473.02 ? CAC HEM 301 K 1 
HETATM 28 C CBC HEM . . . MA 3 105.826 109.46 132.982 1 473.02 ? CBC HEM 301 K 1 
HETATM 29 C C1D HEM . . . MA 3 102.609 104.939 131.463 1 473.02 ? C1D HEM 301 K 1 
HETATM 30 C C2D HEM . . . MA 3 101.76 104.932 130.298 1 473.02 ? C2D HEM 301 K 1 
HETATM 31 C C3D HEM . . . MA 3 101.012 103.835 130.341 1 473.02 ? C3D HEM 301 K 1 
HETATM 32 C C4D HEM . . . MA 3 101.354 103.104 131.535 1 473.02 ? C4D HEM 301 K 1 
HETATM 33 C CMD HEM . . . MA 3 101.727 106.015 129.2 1 473.02 ? CMD HEM 301 K 1 
HETATM 34 C CAD HEM . . . MA 3 99.957 103.414 129.304 1 473.02 ? CAD HEM 301 K 1 
HETATM 35 C CBD HEM . . . MA 3 98.571 103.722 129.859 1 473.02 ? CBD HEM 301 K 1 
HETATM 36 C CGD HEM . . . MA 3 97.614 102.675 129.361 1 473.02 ? CGD HEM 301 K 1 
HETATM 37 O O1D HEM . . . MA 3 97.941 101.992 128.359 1 473.02 ? O1D HEM 301 K 1 
HETATM 38 O O2D HEM . . . MA 3 96.526 102.517 129.967 1 473.02 ? O2D HEM 301 K 1 
HETATM 39 N NA HEM . . . MA 3 102.28 101.444 133.812 1 473.02 ? NA HEM 301 K 1 
HETATM 40 N NB HEM . . . MA 3 104.575 102.327 135.194 1 473.02 ? NB HEM 301 K 1 
HETATM 41 N NC HEM . . . MA 3 104.698 104.7 133.519 1 473.02 ? NC HEM 301 K 1 
HETATM 42 N ND HEM . . . MA 3 102.339 103.803 132.199 1 473.02 ? ND HEM 301 K 1 
HETATM 43 FE FE HEM . . . MA 3 103.523 103.027 133.62 1 473.02 ? FE HEM 301 K 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#