data_6K4R # _model_server_result.job_id o7fj0haBY4iraLu_ek9qcw _model_server_result.datetime_utc '2025-07-15 07:16:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":901}' # _entry.id 6K4R # _exptl.entry_id 6K4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.78 _cell.angle_gamma 90 _cell.entry_id 6K4R _cell.length_a 60.846 _cell.length_b 159.178 _cell.length_c 135.032 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,M 1 1 B,D,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OD1 ASP 23 C ASP 23 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 C OD2 ASP 23 C ASP 23 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 C OD1 ASP 25 C ASP 25 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 C OD2 ASP 25 C ASP 25 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 C O THR 27 C THR 27 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 D OD1 ASP 21 D ASP 21 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 D OD1 ASP 23 D ASP 23 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 D OD2 ASP 23 D ASP 23 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc9 D OG1 THR 27 D THR 27 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6K4R _atom_sites.fract_transf_matrix[1][1] 0.016435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003428 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AMP A 1 901 900 AMP AMP . F 4 CL A 1 902 2 CL CL . G 4 CL A 1 903 4 CL CL . H 3 AMP B 1 901 900 AMP AMP . I 5 PG4 B 1 902 901 PG4 PG4 . J 5 PG4 B 1 903 902 PG4 PG4 . K 4 CL B 1 904 1 CL CL . L 4 CL B 1 905 3 CL CL . M 6 CA C 1 201 1 CA CA . N 6 CA D 1 201 2 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 3 -0.729 -8.225 -66.008 1 71.78 ? P AMP 901 A 1 HETATM 2 O O1P AMP . . . E 3 0.582 -8.672 -66.61 1 72.76 ? O1P AMP 901 A 1 HETATM 3 O O2P AMP . . . E 3 -0.81 -8.301 -64.503 1 67.68 ? O2P AMP 901 A 1 HETATM 4 O O3P AMP . . . E 3 -1.246 -6.922 -66.544 1 71.38 ? O3P AMP 901 A 1 HETATM 5 O O5' AMP . . . E 3 -1.792 -9.279 -66.554 1 72.12 ? O5' AMP 901 A 1 HETATM 6 C C5' AMP . . . E 3 -1.375 -10.432 -67.276 1 65.01 ? C5' AMP 901 A 1 HETATM 7 C C4' AMP . . . E 3 -1.051 -11.564 -66.339 1 67.86 ? C4' AMP 901 A 1 HETATM 8 O O4' AMP . . . E 3 0.137 -11.22 -65.578 1 71.55 ? O4' AMP 901 A 1 HETATM 9 C C3' AMP . . . E 3 -2.145 -11.882 -65.317 1 70.79 ? C3' AMP 901 A 1 HETATM 10 O O3' AMP . . . E 3 -2.239 -13.293 -65.147 1 69.73 ? O3' AMP 901 A 1 HETATM 11 C C2' AMP . . . E 3 -1.621 -11.253 -64.027 1 66.89 ? C2' AMP 901 A 1 HETATM 12 O O2' AMP . . . E 3 -2.076 -11.882 -62.848 1 64.58 ? O2' AMP 901 A 1 HETATM 13 C C1' AMP . . . E 3 -0.112 -11.397 -64.201 1 68.51 ? C1' AMP 901 A 1 HETATM 14 N N9 AMP . . . E 3 0.688 -10.427 -63.441 1 72.4 ? N9 AMP 901 A 1 HETATM 15 C C8 AMP . . . E 3 0.443 -10.058 -62.169 1 75.1 ? C8 AMP 901 A 1 HETATM 16 N N7 AMP . . . E 3 1.357 -9.157 -61.723 1 75.45 ? N7 AMP 901 A 1 HETATM 17 C C5 AMP . . . E 3 2.227 -8.937 -62.725 1 72.55 ? C5 AMP 901 A 1 HETATM 18 C C6 AMP . . . E 3 3.436 -8.1 -62.928 1 74.77 ? C6 AMP 901 A 1 HETATM 19 N N6 AMP . . . E 3 3.912 -7.297 -61.946 1 76.87 ? N6 AMP 901 A 1 HETATM 20 N N1 AMP . . . E 3 4.056 -8.161 -64.127 1 75.17 ? N1 AMP 901 A 1 HETATM 21 C C2 AMP . . . E 3 3.597 -8.948 -65.113 1 72.54 ? C2 AMP 901 A 1 HETATM 22 N N3 AMP . . . E 3 2.51 -9.729 -64.993 1 70.8 ? N3 AMP 901 A 1 HETATM 23 C C4 AMP . . . E 3 1.789 -9.781 -63.85 1 70.49 ? C4 AMP 901 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #