data_6K4R
#
_model_server_result.job_id            cA0i4VesOvdAtv5M8vZt7g 
_model_server_result.datetime_utc      '2025-07-14 18:01:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k4r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":901}' 
#
_entry.id    6K4R 
#
_exptl.entry_id    6K4R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.78 
_cell.angle_gamma         90 
_cell.entry_id            6K4R 
_cell.length_a            60.846 
_cell.length_b            159.178 
_cell.length_c            135.032 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K4R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,M 1 1 
B,D,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C OD1 ASP 23 C ASP 23 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc2 C OD2 ASP 23 C ASP 23 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc3 C OD1 ASP 25 C ASP 25 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc4 C OD2 ASP 25 C ASP 25 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc5 C O THR 27 C THR 27 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc6 D OD1 ASP 21 D ASP 21 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc7 D OD1 ASP 23 D ASP 23 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc8 D OD2 ASP 23 D ASP 23 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc9 D OG1 THR 27 D THR 27 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     6K4R 
_atom_sites.fract_transf_matrix[1][1]    0.016435 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003428 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006282 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007565 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 AMP A 1 901 900 AMP AMP . 
F 4 CL A 1 902 2 CL CL . 
G 4 CL A 1 903 4 CL CL . 
H 3 AMP B 1 901 900 AMP AMP . 
I 5 PG4 B 1 902 901 PG4 PG4 . 
J 5 PG4 B 1 903 902 PG4 PG4 . 
K 4 CL B 1 904 1 CL CL . 
L 4 CL B 1 905 3 CL CL . 
M 6 CA C 1 201 1 CA CA . 
N 6 CA D 1 201 2 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . H 3 -10.838 -7.564 20.651 1 89.61 ? P AMP 901 B 1 
HETATM 2 O O1P AMP . . . H 3 -11.125 -6.642 19.487 1 81.87 ? O1P AMP 901 B 1 
HETATM 3 O O2P AMP . . . H 3 -10.894 -9.033 20.295 1 81.18 ? O2P AMP 901 B 1 
HETATM 4 O O3P AMP . . . H 3 -9.639 -7.154 21.477 1 82.24 ? O3P AMP 901 B 1 
HETATM 5 O O5' AMP . . . H 3 -12.07 -7.348 21.64 1 74.1 ? O5' AMP 901 B 1 
HETATM 6 C C5' AMP . . . H 3 -11.879 -7.293 23.051 1 72.25 ? C5' AMP 901 B 1 
HETATM 7 C C4' AMP . . . H 3 -12.64 -8.386 23.756 1 73.97 ? C4' AMP 901 B 1 
HETATM 8 O O4' AMP . . . H 3 -13.82 -8.714 22.97 1 66.72 ? O4' AMP 901 B 1 
HETATM 9 C C3' AMP . . . H 3 -11.868 -9.697 23.932 1 70.27 ? C3' AMP 901 B 1 
HETATM 10 O O3' AMP . . . H 3 -12.238 -10.311 25.166 1 66.93 ? O3' AMP 901 B 1 
HETATM 11 C C2' AMP . . . H 3 -12.379 -10.543 22.773 1 72.9 ? C2' AMP 901 B 1 
HETATM 12 O O2' AMP . . . H 3 -12.252 -11.936 22.961 1 71.92 ? O2' AMP 901 B 1 
HETATM 13 C C1' AMP . . . H 3 -13.835 -10.099 22.703 1 71.21 ? C1' AMP 901 B 1 
HETATM 14 N N9 AMP . . . H 3 -14.481 -10.335 21.408 1 72.27 ? N9 AMP 901 B 1 
HETATM 15 C C8 AMP . . . H 3 -13.861 -10.629 20.248 1 72.63 ? C8 AMP 901 B 1 
HETATM 16 N N7 AMP . . . H 3 -14.759 -10.816 19.244 1 73.33 ? N7 AMP 901 B 1 
HETATM 17 C C5 AMP . . . H 3 -15.989 -10.651 19.766 1 71.49 ? C5 AMP 901 B 1 
HETATM 18 C C6 AMP . . . H 3 -17.385 -10.711 19.269 1 72.41 ? C6 AMP 901 B 1 
HETATM 19 N N6 AMP . . . H 3 -17.655 -10.987 17.973 1 73.82 ? N6 AMP 901 B 1 
HETATM 20 N N1 AMP . . . H 3 -18.383 -10.478 20.147 1 73.09 ? N1 AMP 901 B 1 
HETATM 21 C C2 AMP . . . H 3 -18.129 -10.2 21.438 1 74.27 ? C2 AMP 901 B 1 
HETATM 22 N N3 AMP . . . H 3 -16.891 -10.127 21.958 1 73.37 ? N3 AMP 901 B 1 
HETATM 23 C C4 AMP . . . H 3 -15.798 -10.339 21.189 1 71.33 ? C4 AMP 901 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#