data_6K4R # _model_server_result.job_id kf3daY1R0kyxHCTFxKPMAw _model_server_result.datetime_utc '2024-12-22 06:15:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k4r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":903}' # _entry.id 6K4R # _exptl.entry_id 6K4R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.78 _cell.angle_gamma 90 _cell.entry_id 6K4R _cell.length_a 60.846 _cell.length_b 159.178 _cell.length_c 135.032 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K4R _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,M 1 1 B,D,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OD1 ASP 23 C ASP 23 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc2 C OD2 ASP 23 C ASP 23 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 C OD1 ASP 25 C ASP 25 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 C OD2 ASP 25 C ASP 25 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc5 C O THR 27 C THR 27 1_555 M CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 D OD1 ASP 21 D ASP 21 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc7 D OD1 ASP 23 D ASP 23 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc8 D OD2 ASP 23 D ASP 23 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc9 D OG1 THR 27 D THR 27 1_555 N CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 274 n n O1 HO1 PG4 sing 275 n n C1 C2 PG4 sing 276 n n C1 H11 PG4 sing 277 n n C1 H12 PG4 sing 278 n n C2 O2 PG4 sing 279 n n C2 H21 PG4 sing 280 n n C2 H22 PG4 sing 281 n n O2 C3 PG4 sing 282 n n C3 C4 PG4 sing 283 n n C3 H31 PG4 sing 284 n n C3 H32 PG4 sing 285 n n C4 O3 PG4 sing 286 n n C4 H41 PG4 sing 287 n n C4 H42 PG4 sing 288 n n O3 C5 PG4 sing 289 n n C5 C6 PG4 sing 290 n n C5 H51 PG4 sing 291 n n C5 H52 PG4 sing 292 n n C6 O4 PG4 sing 293 n n C6 H61 PG4 sing 294 n n C6 H62 PG4 sing 295 n n O4 C7 PG4 sing 296 n n C7 C8 PG4 sing 297 n n C7 H71 PG4 sing 298 n n C7 H72 PG4 sing 299 n n C8 O5 PG4 sing 300 n n C8 H81 PG4 sing 301 n n C8 H82 PG4 sing 302 n n O5 HO5 PG4 sing 303 n n # _atom_sites.entry_id 6K4R _atom_sites.fract_transf_matrix[1][1] 0.016435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003428 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 AMP A 1 901 900 AMP AMP . F 4 CL A 1 902 2 CL CL . G 4 CL A 1 903 4 CL CL . H 3 AMP B 1 901 900 AMP AMP . I 5 PG4 B 1 902 901 PG4 PG4 . J 5 PG4 B 1 903 902 PG4 PG4 . K 4 CL B 1 904 1 CL CL . L 4 CL B 1 905 3 CL CL . M 6 CA C 1 201 1 CA CA . N 6 CA D 1 201 2 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . J 5 0.759 -62.906 13.609 1 77.63 ? O1 PG4 903 B 1 HETATM 2 C C1 PG4 . . . J 5 0.001 -63.985 13.134 1 79.43 ? C1 PG4 903 B 1 HETATM 3 C C2 PG4 . . . J 5 0.664 -64.568 11.887 1 81.78 ? C2 PG4 903 B 1 HETATM 4 O O2 PG4 . . . J 5 2.014 -64.829 12.151 1 83.76 ? O2 PG4 903 B 1 HETATM 5 C C3 PG4 . . . J 5 2.42 -66.142 11.881 1 80.29 ? C3 PG4 903 B 1 HETATM 6 C C4 PG4 . . . J 5 2.387 -66.988 13.155 1 80.95 ? C4 PG4 903 B 1 HETATM 7 O O3 PG4 . . . J 5 1.065 -67.209 13.561 1 82.66 ? O3 PG4 903 B 1 HETATM 8 C C5 PG4 . . . J 5 0.855 -68.436 14.2 1 79.4 ? C5 PG4 903 B 1 HETATM 9 C C6 PG4 . . . J 5 0.94 -69.563 13.174 1 82.94 ? C6 PG4 903 B 1 HETATM 10 O O4 PG4 . . . J 5 1.138 -70.782 13.831 1 90.01 ? O4 PG4 903 B 1 HETATM 11 C C7 PG4 . . . J 5 2.231 -71.512 13.348 1 91.05 ? C7 PG4 903 B 1 HETATM 12 C C8 PG4 . . . J 5 2.153 -72.951 13.856 1 83.94 ? C8 PG4 903 B 1 HETATM 13 O O5 PG4 . . . J 5 3.202 -73.698 13.306 1 79.53 ? O5 PG4 903 B 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 550 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #