data_6K5H
#
_model_server_result.job_id            oNLnMCduUG96mZ5W1RzpxQ 
_model_server_result.datetime_utc      '2024-11-15 06:10:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k5h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":402}' 
#
_entry.id    6K5H 
#
_exptl.entry_id    6K5H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              230.11 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1-O-phosphono-alpha-D-ribofuranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K5H 
_cell.length_a            66.975 
_cell.length_b            97.688 
_cell.length_c            188.865 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K5H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,K,L,M,P 1 1 
B,C,G,H,I,J,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C5 H11 O8 P' 
_chem_comp.formula_weight    230.11 
_chem_comp.id                R1P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1-O-phosphono-alpha-D-ribofuranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     RIBOSE-1-PHOSPHATE;1-O-phosphono-alpha-D-ribose;1-O-phosphono-D-ribose;1-O-phosphono-ribose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 O5 R1P sing 277 n n 
C5 C4 R1P sing 278 n n 
C5 H51 R1P sing 279 n n 
C5 H52 R1P sing 280 n n 
O5 HO5 R1P sing 281 n n 
C4 O4 R1P sing 282 n n 
C4 C3 R1P sing 283 n n 
C4 H4 R1P sing 284 n n 
O4 C1 R1P sing 285 n n 
C1 C2 R1P sing 286 n n 
C1 O1 R1P sing 287 n n 
C1 H1 R1P sing 288 n n 
C2 O2 R1P sing 289 n n 
C2 C3 R1P sing 290 n n 
C2 H2 R1P sing 291 n n 
O2 HO2 R1P sing 292 n n 
C3 O3 R1P sing 293 n n 
C3 H3 R1P sing 294 n n 
O3 HO3 R1P sing 295 n n 
O1 P R1P sing 296 n n 
P O1P R1P doub 297 n n 
P O2P R1P sing 298 n n 
P O3P R1P sing 299 n n 
O2P HOP2 R1P sing 300 n n 
O3P HOP3 R1P sing 301 n n 
#
_pdbx_chem_comp_identifier.comp_id            R1P 
_pdbx_chem_comp_identifier.identifier         a-D-Ribf1PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     6K5H 
_atom_sites.fract_transf_matrix[1][1]    0.014931 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005295 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 URA A 1 401 1 URA URA . 
F 3 R1P A 1 402 1 R1P R1P . 
G 2 URA B 1 401 2 URA URA . 
H 3 R1P B 1 402 2 R1P R1P . 
I 2 URA C 1 401 3 URA URA . 
J 3 R1P C 1 402 3 R1P R1P . 
K 2 URA D 1 401 4 URA URA . 
L 3 R1P D 1 402 4 R1P R1P . 
M 4 HOH A 1 501 192 HOH HOH . 
M 4 HOH A 2 502 21 HOH HOH . 
M 4 HOH A 3 503 173 HOH HOH . 
M 4 HOH A 4 504 116 HOH HOH . 
M 4 HOH A 5 505 36 HOH HOH . 
M 4 HOH A 6 506 12 HOH HOH . 
M 4 HOH A 7 507 34 HOH HOH . 
M 4 HOH A 8 508 85 HOH HOH . 
M 4 HOH A 9 509 80 HOH HOH . 
M 4 HOH A 10 510 2 HOH HOH . 
M 4 HOH A 11 511 52 HOH HOH . 
M 4 HOH A 12 512 68 HOH HOH . 
M 4 HOH A 13 513 5 HOH HOH . 
M 4 HOH A 14 514 61 HOH HOH . 
M 4 HOH A 15 515 73 HOH HOH . 
M 4 HOH A 16 516 117 HOH HOH . 
M 4 HOH A 17 517 45 HOH HOH . 
M 4 HOH A 18 518 153 HOH HOH . 
M 4 HOH A 19 519 78 HOH HOH . 
M 4 HOH A 20 520 99 HOH HOH . 
M 4 HOH A 21 521 92 HOH HOH . 
M 4 HOH A 22 522 125 HOH HOH . 
M 4 HOH A 23 523 108 HOH HOH . 
M 4 HOH A 24 524 89 HOH HOH . 
M 4 HOH A 25 525 126 HOH HOH . 
M 4 HOH A 26 526 84 HOH HOH . 
M 4 HOH A 27 527 145 HOH HOH . 
M 4 HOH A 28 528 26 HOH HOH . 
M 4 HOH A 29 529 115 HOH HOH . 
M 4 HOH A 30 530 140 HOH HOH . 
M 4 HOH A 31 531 29 HOH HOH . 
M 4 HOH A 32 532 147 HOH HOH . 
M 4 HOH A 33 533 166 HOH HOH . 
M 4 HOH A 34 534 182 HOH HOH . 
M 4 HOH A 35 535 60 HOH HOH . 
M 4 HOH A 36 536 123 HOH HOH . 
M 4 HOH A 37 537 42 HOH HOH . 
M 4 HOH A 38 538 18 HOH HOH . 
M 4 HOH A 39 539 83 HOH HOH . 
M 4 HOH A 40 540 100 HOH HOH . 
M 4 HOH A 41 541 72 HOH HOH . 
N 4 HOH B 1 501 191 HOH HOH . 
N 4 HOH B 2 502 179 HOH HOH . 
N 4 HOH B 3 503 69 HOH HOH . 
N 4 HOH B 4 504 109 HOH HOH . 
N 4 HOH B 5 505 137 HOH HOH . 
N 4 HOH B 6 506 70 HOH HOH . 
N 4 HOH B 7 507 17 HOH HOH . 
N 4 HOH B 8 508 138 HOH HOH . 
N 4 HOH B 9 509 30 HOH HOH . 
N 4 HOH B 10 510 24 HOH HOH . 
N 4 HOH B 11 511 15 HOH HOH . 
N 4 HOH B 12 512 152 HOH HOH . 
N 4 HOH B 13 513 87 HOH HOH . 
N 4 HOH B 14 514 1 HOH HOH . 
N 4 HOH B 15 515 8 HOH HOH . 
N 4 HOH B 16 516 74 HOH HOH . 
N 4 HOH B 17 517 121 HOH HOH . 
N 4 HOH B 18 518 44 HOH HOH . 
N 4 HOH B 19 519 67 HOH HOH . 
N 4 HOH B 20 520 23 HOH HOH . 
N 4 HOH B 21 521 158 HOH HOH . 
N 4 HOH B 22 522 159 HOH HOH . 
N 4 HOH B 23 523 146 HOH HOH . 
N 4 HOH B 24 524 135 HOH HOH . 
N 4 HOH B 25 525 168 HOH HOH . 
N 4 HOH B 26 526 88 HOH HOH . 
N 4 HOH B 27 527 175 HOH HOH . 
N 4 HOH B 28 528 62 HOH HOH . 
N 4 HOH B 29 529 157 HOH HOH . 
N 4 HOH B 30 530 55 HOH HOH . 
N 4 HOH B 31 531 174 HOH HOH . 
N 4 HOH B 32 532 39 HOH HOH . 
N 4 HOH B 33 533 90 HOH HOH . 
N 4 HOH B 34 534 136 HOH HOH . 
N 4 HOH B 35 535 96 HOH HOH . 
N 4 HOH B 36 536 128 HOH HOH . 
N 4 HOH B 37 537 120 HOH HOH . 
N 4 HOH B 38 538 184 HOH HOH . 
N 4 HOH B 39 539 187 HOH HOH . 
N 4 HOH B 40 540 143 HOH HOH . 
N 4 HOH B 41 541 94 HOH HOH . 
N 4 HOH B 42 542 54 HOH HOH . 
N 4 HOH B 43 543 144 HOH HOH . 
N 4 HOH B 44 544 154 HOH HOH . 
N 4 HOH B 45 545 155 HOH HOH . 
N 4 HOH B 46 546 169 HOH HOH . 
N 4 HOH B 47 547 63 HOH HOH . 
N 4 HOH B 48 548 161 HOH HOH . 
N 4 HOH B 49 549 177 HOH HOH . 
N 4 HOH B 50 550 106 HOH HOH . 
O 4 HOH C 1 501 35 HOH HOH . 
O 4 HOH C 2 502 9 HOH HOH . 
O 4 HOH C 3 503 185 HOH HOH . 
O 4 HOH C 4 504 20 HOH HOH . 
O 4 HOH C 5 505 65 HOH HOH . 
O 4 HOH C 6 506 10 HOH HOH . 
O 4 HOH C 7 507 16 HOH HOH . 
O 4 HOH C 8 508 127 HOH HOH . 
O 4 HOH C 9 509 122 HOH HOH . 
O 4 HOH C 10 510 19 HOH HOH . 
O 4 HOH C 11 511 25 HOH HOH . 
O 4 HOH C 12 512 58 HOH HOH . 
O 4 HOH C 13 513 40 HOH HOH . 
O 4 HOH C 14 514 38 HOH HOH . 
O 4 HOH C 15 515 4 HOH HOH . 
O 4 HOH C 16 516 77 HOH HOH . 
O 4 HOH C 17 517 86 HOH HOH . 
O 4 HOH C 18 518 183 HOH HOH . 
O 4 HOH C 19 519 11 HOH HOH . 
O 4 HOH C 20 520 148 HOH HOH . 
O 4 HOH C 21 521 107 HOH HOH . 
O 4 HOH C 22 522 76 HOH HOH . 
O 4 HOH C 23 523 53 HOH HOH . 
O 4 HOH C 24 524 151 HOH HOH . 
O 4 HOH C 25 525 64 HOH HOH . 
O 4 HOH C 26 526 171 HOH HOH . 
O 4 HOH C 27 527 7 HOH HOH . 
O 4 HOH C 28 528 104 HOH HOH . 
O 4 HOH C 29 529 180 HOH HOH . 
O 4 HOH C 30 530 172 HOH HOH . 
O 4 HOH C 31 531 91 HOH HOH . 
O 4 HOH C 32 532 51 HOH HOH . 
O 4 HOH C 33 533 97 HOH HOH . 
O 4 HOH C 34 534 139 HOH HOH . 
O 4 HOH C 35 535 82 HOH HOH . 
O 4 HOH C 36 536 189 HOH HOH . 
O 4 HOH C 37 537 178 HOH HOH . 
O 4 HOH C 38 538 79 HOH HOH . 
O 4 HOH C 39 539 167 HOH HOH . 
O 4 HOH C 40 540 150 HOH HOH . 
O 4 HOH C 41 541 75 HOH HOH . 
O 4 HOH C 42 542 129 HOH HOH . 
O 4 HOH C 43 543 176 HOH HOH . 
O 4 HOH C 44 544 66 HOH HOH . 
P 4 HOH D 1 501 110 HOH HOH . 
P 4 HOH D 2 502 160 HOH HOH . 
P 4 HOH D 3 503 71 HOH HOH . 
P 4 HOH D 4 504 165 HOH HOH . 
P 4 HOH D 5 505 141 HOH HOH . 
P 4 HOH D 6 506 33 HOH HOH . 
P 4 HOH D 7 507 142 HOH HOH . 
P 4 HOH D 8 508 37 HOH HOH . 
P 4 HOH D 9 509 41 HOH HOH . 
P 4 HOH D 10 510 162 HOH HOH . 
P 4 HOH D 11 511 13 HOH HOH . 
P 4 HOH D 12 512 114 HOH HOH . 
P 4 HOH D 13 513 28 HOH HOH . 
P 4 HOH D 14 514 49 HOH HOH . 
P 4 HOH D 15 515 14 HOH HOH . 
P 4 HOH D 16 516 32 HOH HOH . 
P 4 HOH D 17 517 27 HOH HOH . 
P 4 HOH D 18 518 98 HOH HOH . 
P 4 HOH D 19 519 59 HOH HOH . 
P 4 HOH D 20 520 56 HOH HOH . 
P 4 HOH D 21 521 31 HOH HOH . 
P 4 HOH D 22 522 46 HOH HOH . 
P 4 HOH D 23 523 163 HOH HOH . 
P 4 HOH D 24 524 113 HOH HOH . 
P 4 HOH D 25 525 48 HOH HOH . 
P 4 HOH D 26 526 93 HOH HOH . 
P 4 HOH D 27 527 81 HOH HOH . 
P 4 HOH D 28 528 6 HOH HOH . 
P 4 HOH D 29 529 50 HOH HOH . 
P 4 HOH D 30 530 164 HOH HOH . 
P 4 HOH D 31 531 181 HOH HOH . 
P 4 HOH D 32 532 95 HOH HOH . 
P 4 HOH D 33 533 124 HOH HOH . 
P 4 HOH D 34 534 3 HOH HOH . 
P 4 HOH D 35 535 130 HOH HOH . 
P 4 HOH D 36 536 101 HOH HOH . 
P 4 HOH D 37 537 156 HOH HOH . 
P 4 HOH D 38 538 118 HOH HOH . 
P 4 HOH D 39 539 131 HOH HOH . 
P 4 HOH D 40 540 103 HOH HOH . 
P 4 HOH D 41 541 132 HOH HOH . 
P 4 HOH D 42 542 188 HOH HOH . 
P 4 HOH D 43 543 149 HOH HOH . 
P 4 HOH D 44 544 105 HOH HOH . 
P 4 HOH D 45 545 119 HOH HOH . 
P 4 HOH D 46 546 112 HOH HOH . 
P 4 HOH D 47 547 22 HOH HOH . 
P 4 HOH D 48 548 134 HOH HOH . 
P 4 HOH D 49 549 170 HOH HOH . 
P 4 HOH D 50 550 47 HOH HOH . 
P 4 HOH D 51 551 186 HOH HOH . 
P 4 HOH D 52 552 43 HOH HOH . 
P 4 HOH D 53 553 57 HOH HOH . 
P 4 HOH D 54 554 102 HOH HOH . 
P 4 HOH D 55 555 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C5 R1P . . . L 3 -39.595 37.868 -23.338 1 35.18 ? C5 R1P 402 D 1 
HETATM 2 O O5 R1P . . . L 3 -40.268 36.837 -24.087 1 23.67 ? O5 R1P 402 D 1 
HETATM 3 C C4 R1P . . . L 3 -39.899 39.328 -23.777 1 37.08 ? C4 R1P 402 D 1 
HETATM 4 O O4 R1P . . . L 3 -41.199 39.638 -23.71 1 26.61 ? O4 R1P 402 D 1 
HETATM 5 C C1 R1P . . . L 3 -41.377 40.462 -22.345 1 21.43 ? C1 R1P 402 D 1 
HETATM 6 C C2 R1P . . . L 3 -40.166 40.514 -21.736 1 25.2 ? C2 R1P 402 D 1 
HETATM 7 O O2 R1P . . . L 3 -40.085 41.835 -21.072 1 25.2 ? O2 R1P 402 D 1 
HETATM 8 C C3 R1P . . . L 3 -39.135 40.366 -22.827 1 25.93 ? C3 R1P 402 D 1 
HETATM 9 O O3 R1P . . . L 3 -38.861 41.617 -23.417 1 26.2 ? O3 R1P 402 D 1 
HETATM 10 O O1 R1P . . . L 3 -41.845 41.73 -22.622 1 30.98 ? O1 R1P 402 D 1 
HETATM 11 P P R1P . . . L 3 -41.856 42.276 -24.225 1 27.69 ? P R1P 402 D 1 
HETATM 12 O O1P R1P . . . L 3 -42.538 41.336 -25.18 1 26.87 ? O1P R1P 402 D 1 
HETATM 13 O O2P R1P . . . L 3 -40.338 42.342 -24.61 1 26.52 ? O2P R1P 402 D 1 
HETATM 14 O O3P R1P . . . L 3 -42.556 43.617 -24.246 1 17.76 ? O3P R1P 402 D 1 
HETATM 15 H H51 R1P . . . L 3 -38.64 37.724 -23.425 1 42.21 ? H51 R1P 402 D 1 
HETATM 16 H H52 R1P . . . L 3 -39.853 37.777 -22.407 1 42.21 ? H52 R1P 402 D 1 
HETATM 17 H HO5 R1P . . . L 3 -40.343 36.14 -23.606 1 28.4 ? HO5 R1P 402 D 1 
HETATM 18 H H4 R1P . . . L 3 -39.619 39.442 -24.699 1 44.5 ? H4 R1P 402 D 1 
HETATM 19 H H1 R1P . . . L 3 -41.988 39.989 -21.76 1 25.71 ? H1 R1P 402 D 1 
HETATM 20 H H2 R1P . . . L 3 -40.029 39.785 -21.11 1 30.24 ? H2 R1P 402 D 1 
HETATM 21 H HO2 R1P . . . L 3 -39.27 42.029 -20.926 1 30.24 ? HO2 R1P 402 D 1 
HETATM 22 H H3 R1P . . . L 3 -38.277 40.013 -22.544 1 31.12 ? H3 R1P 402 D 1 
HETATM 23 H HO3 R1P . . . L 3 -38.021 41.748 -23.426 1 31.44 ? HO3 R1P 402 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           372 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#