data_6K5O # _model_server_result.job_id 1Nvlmhs-oU_BIPWUYg14eA _model_server_result.datetime_utc '2024-12-23 06:52:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 6K5O # _exptl.entry_id 6K5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.663 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-3-methylsulfonyloxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.05 _cell.angle_gamma 90 _cell.entry_id 6K5O _cell.length_a 153.884 _cell.length_b 43.69 _cell.length_c 41.792 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H42 O5 S' _chem_comp.formula_weight 454.663 _chem_comp.id D0O _chem_comp.mon_nstd_flag . _chem_comp.name '(4~{R})-4-[(3~{R},5~{R},8~{R},9~{S},10~{S},13~{R},14~{S},17~{R})-10,13-dimethyl-3-methylsulfonyloxy-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1~{H}-cyclopenta[a]phenanthren-17-yl]pentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4A C24 D0O doub 83 n n O4 C24 D0O sing 84 n n C24 C23 D0O sing 85 n n C23 C22 D0O sing 86 n n C22 C20 D0O sing 87 n n C20 C17 D0O sing 88 n n C20 C21 D0O sing 89 n n C16 C17 D0O sing 90 n n C16 C15 D0O sing 91 n n C17 C13 D0O sing 92 n n C15 C14 D0O sing 93 n n OP2 S D0O doub 94 n n C14 C13 D0O sing 95 n n C14 C8 D0O sing 96 n n C13 C12 D0O sing 97 n n C13 C18 D0O sing 98 n n C12 C11 D0O sing 99 n n O1 S D0O sing 100 n n O1 C3 D0O sing 101 n n S OP1 D0O doub 102 n n S C25 D0O sing 103 n n C7 C8 D0O sing 104 n n C7 C6 D0O sing 105 n n C8 C9 D0O sing 106 n n C4 C3 D0O sing 107 n n C4 C5 D0O sing 108 n n C9 C11 D0O sing 109 n n C9 C10 D0O sing 110 n n C3 C2 D0O sing 111 n n C6 C5 D0O sing 112 n n C2 C1 D0O sing 113 n n C5 C10 D0O sing 114 n n C10 C1 D0O sing 115 n n C10 C19 D0O sing 116 n n C1 H1 D0O sing 117 n n C1 H2 D0O sing 118 n n C2 H3 D0O sing 119 n n C2 H4 D0O sing 120 n n C3 H5 D0O sing 121 n n C4 H6 D0O sing 122 n n C4 H7 D0O sing 123 n n C5 H8 D0O sing 124 n n C6 H9 D0O sing 125 n n C6 H10 D0O sing 126 n n C7 H11 D0O sing 127 n n C7 H12 D0O sing 128 n n C8 H13 D0O sing 129 n n C9 H14 D0O sing 130 n n C11 H15 D0O sing 131 n n C11 H16 D0O sing 132 n n C12 H17 D0O sing 133 n n C12 H18 D0O sing 134 n n C14 H19 D0O sing 135 n n C15 H20 D0O sing 136 n n C15 H21 D0O sing 137 n n C16 H22 D0O sing 138 n n C16 H23 D0O sing 139 n n C17 H24 D0O sing 140 n n C18 H25 D0O sing 141 n n C18 H26 D0O sing 142 n n C18 H27 D0O sing 143 n n C19 H28 D0O sing 144 n n C19 H29 D0O sing 145 n n C19 H30 D0O sing 146 n n C20 H31 D0O sing 147 n n C21 H32 D0O sing 148 n n C21 H33 D0O sing 149 n n C21 H34 D0O sing 150 n n C22 H35 D0O sing 151 n n C22 H36 D0O sing 152 n n C23 H37 D0O sing 153 n n C23 H38 D0O sing 154 n n C25 H39 D0O sing 155 n n C25 H40 D0O sing 156 n n C25 H41 D0O sing 157 n n O4 H42 D0O sing 158 n n # _atom_sites.entry_id 6K5O _atom_sites.fract_transf_matrix[1][1] 0.006498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000689 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022889 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 D0O A 1 501 501 D0O LC6 . D 4 HOH A 1 601 25 HOH HOH . D 4 HOH A 2 602 14 HOH HOH . D 4 HOH A 3 603 1 HOH HOH . D 4 HOH A 4 604 22 HOH HOH . D 4 HOH A 5 605 16 HOH HOH . D 4 HOH A 6 606 4 HOH HOH . D 4 HOH A 7 607 8 HOH HOH . D 4 HOH A 8 608 17 HOH HOH . D 4 HOH A 9 609 2 HOH HOH . D 4 HOH A 10 610 13 HOH HOH . D 4 HOH A 11 611 18 HOH HOH . D 4 HOH A 12 612 7 HOH HOH . D 4 HOH A 13 613 23 HOH HOH . D 4 HOH A 14 614 10 HOH HOH . D 4 HOH A 15 615 11 HOH HOH . D 4 HOH A 16 616 21 HOH HOH . D 4 HOH A 17 617 5 HOH HOH . D 4 HOH A 18 618 6 HOH HOH . D 4 HOH A 19 619 9 HOH HOH . D 4 HOH A 20 620 12 HOH HOH . D 4 HOH A 21 621 3 HOH HOH . D 4 HOH A 22 622 20 HOH HOH . D 4 HOH A 23 623 19 HOH HOH . E 4 HOH C 1 701 24 HOH HOH . E 4 HOH C 2 702 26 HOH HOH . E 4 HOH C 3 703 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D0O . . . C 3 10.38 2.435 28.598 1 33.8 ? C1 D0O 501 A 1 HETATM 2 C C2 D0O . . . C 3 9.43 1.95 27.548 1 32.7 ? C2 D0O 501 A 1 HETATM 3 C C3 D0O . . . C 3 9.687 0.495 27.301 1 34.3 ? C3 D0O 501 A 1 HETATM 4 C C4 D0O . . . C 3 11.129 0.18 26.931 1 33.48 ? C4 D0O 501 A 1 HETATM 5 C C5 D0O . . . C 3 12.088 0.784 27.953 1 32.8 ? C5 D0O 501 A 1 HETATM 6 C C6 D0O . . . C 3 13.528 0.525 27.498 1 33.2 ? C6 D0O 501 A 1 HETATM 7 C C7 D0O . . . C 3 14.018 1.365 26.318 1 29.27 ? C7 D0O 501 A 1 HETATM 8 C C8 D0O . . . C 3 13.707 2.835 26.532 1 31.73 ? C8 D0O 501 A 1 HETATM 9 C C9 D0O . . . C 3 12.248 3.076 26.963 1 30.17 ? C9 D0O 501 A 1 HETATM 10 C C10 D0O . . . C 3 11.857 2.278 28.219 1 33.02 ? C10 D0O 501 A 1 HETATM 11 C C11 D0O . . . C 3 12.007 4.569 27.073 1 30.16 ? C11 D0O 501 A 1 HETATM 12 C C12 D0O . . . C 3 12.33 5.291 25.787 1 29.78 ? C12 D0O 501 A 1 HETATM 13 C C13 D0O . . . C 3 13.764 5.104 25.345 1 29.56 ? C13 D0O 501 A 1 HETATM 14 C C14 D0O . . . C 3 13.987 3.608 25.247 1 28.02 ? C14 D0O 501 A 1 HETATM 15 C C15 D0O . . . C 3 15.352 3.477 24.606 1 28.31 ? C15 D0O 501 A 1 HETATM 16 C C16 D0O . . . C 3 15.358 4.685 23.648 1 29.61 ? C16 D0O 501 A 1 HETATM 17 C C17 D0O . . . C 3 14.091 5.502 23.91 1 27.86 ? C17 D0O 501 A 1 HETATM 18 C C18 D0O . . . C 3 14.704 5.761 26.339 1 31.5 ? C18 D0O 501 A 1 HETATM 19 C C19 D0O . . . C 3 12.647 2.659 29.484 1 34.21 ? C19 D0O 501 A 1 HETATM 20 C C20 D0O . . . C 3 14.344 6.961 23.466 1 30.62 ? C20 D0O 501 A 1 HETATM 21 C C21 D0O . . . C 3 13.231 7.904 23.919 1 31.88 ? C21 D0O 501 A 1 HETATM 22 C C22 D0O . . . C 3 14.482 6.995 21.927 1 31.99 ? C22 D0O 501 A 1 HETATM 23 C C23 D0O . . . C 3 14.987 8.333 21.393 1 32.36 ? C23 D0O 501 A 1 HETATM 24 C C24 D0O . . . C 3 15.535 8.242 19.983 1 33.63 ? C24 D0O 501 A 1 HETATM 25 C C25 D0O . . . C 3 6.935 -0.97 27.578 1 50.23 ? C25 D0O 501 A 1 HETATM 26 O O4A D0O . . . C 3 15.242 7.333 19.24 1 34.29 ? O4A D0O 501 A 1 HETATM 27 O O4 D0O . . . C 3 16.4 9.149 19.535 1 33.68 ? O4 D0O 501 A 1 HETATM 28 O O1 D0O . . . C 3 8.838 0.166 26.195 1 38.24 ? O1 D0O 501 A 1 HETATM 29 S S D0O . . . C 3 7.994 -1.123 26.317 1 45.11 ? S D0O 501 A 1 HETATM 30 O OP2 D0O . . . C 3 7.339 -1.296 25.071 1 48.65 ? OP2 D0O 501 A 1 HETATM 31 O OP1 D0O . . . C 3 8.736 -2.311 26.579 1 45.96 ? OP1 D0O 501 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #