data_6K74 # _model_server_result.job_id eMqTgK3H9AblyyntCZBROg _model_server_result.datetime_utc '2024-10-13 03:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k74 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6K74 # _exptl.entry_id 6K74 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K74 _cell.length_a 89.283 _cell.length_b 95.853 _cell.length_c 93.396 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K74 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 174 A ASP 174 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc2 A OD2 ASP 174 A ASP 174 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc3 B O1G ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc4 B O1B ANP . A ANP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 6K74 _atom_sites.fract_transf_matrix[1][1] 0.0112 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010433 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010707 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 1 ANP ANP . C 3 MG A 1 402 1 MG MG . D 4 SO4 A 1 403 1 SO4 SO4 . E 4 SO4 A 1 404 2 SO4 SO4 . F 5 HOH A 1 501 8 HOH HOH . F 5 HOH A 2 502 68 HOH HOH . F 5 HOH A 3 503 65 HOH HOH . F 5 HOH A 4 504 36 HOH HOH . F 5 HOH A 5 505 37 HOH HOH . F 5 HOH A 6 506 55 HOH HOH . F 5 HOH A 7 507 60 HOH HOH . F 5 HOH A 8 508 59 HOH HOH . F 5 HOH A 9 509 4 HOH HOH . F 5 HOH A 10 510 11 HOH HOH . F 5 HOH A 11 511 9 HOH HOH . F 5 HOH A 12 512 57 HOH HOH . F 5 HOH A 13 513 23 HOH HOH . F 5 HOH A 14 514 48 HOH HOH . F 5 HOH A 15 515 35 HOH HOH . F 5 HOH A 16 516 29 HOH HOH . F 5 HOH A 17 517 63 HOH HOH . F 5 HOH A 18 518 15 HOH HOH . F 5 HOH A 19 519 51 HOH HOH . F 5 HOH A 20 520 12 HOH HOH . F 5 HOH A 21 521 20 HOH HOH . F 5 HOH A 22 522 10 HOH HOH . F 5 HOH A 23 523 50 HOH HOH . F 5 HOH A 24 524 64 HOH HOH . F 5 HOH A 25 525 34 HOH HOH . F 5 HOH A 26 526 69 HOH HOH . F 5 HOH A 27 527 38 HOH HOH . F 5 HOH A 28 528 14 HOH HOH . F 5 HOH A 29 529 30 HOH HOH . F 5 HOH A 30 530 62 HOH HOH . F 5 HOH A 31 531 28 HOH HOH . F 5 HOH A 32 532 39 HOH HOH . F 5 HOH A 33 533 27 HOH HOH . F 5 HOH A 34 534 49 HOH HOH . F 5 HOH A 35 535 22 HOH HOH . F 5 HOH A 36 536 66 HOH HOH . F 5 HOH A 37 537 45 HOH HOH . F 5 HOH A 38 538 58 HOH HOH . F 5 HOH A 39 539 31 HOH HOH . F 5 HOH A 40 540 32 HOH HOH . F 5 HOH A 41 541 47 HOH HOH . F 5 HOH A 42 542 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 -8.568 -13.296 -17.961 1 66.98 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . B 2 -8.986 -13.497 -19.391 1 62.33 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . B 2 -7.207 -14.059 -17.72 1 62.82 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . B 2 -9.612 -13.9 -16.939 1 58.5 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . B 2 -8.631 -10.435 -18.66 1 66.4 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . B 2 -9.513 -10.854 -19.802 1 62.66 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . B 2 -7.24 -10.061 -19.243 1 70.99 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . B 2 -8.433 -11.656 -17.512 1 65.08 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . B 2 -10.531 -9.247 -16.927 1 60.47 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . B 2 -11.634 -8.4 -17.466 1 54.18 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . B 2 -10.913 -10.714 -16.693 1 54.31 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . B 2 -9.246 -9.185 -17.926 1 61.2 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . B 2 -10.09 -8.592 -15.555 1 52.92 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . B 2 -8.947 -9.069 -14.823 1 54.72 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . B 2 -9.134 -8.691 -13.377 1 55.21 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . B 2 -9.381 -7.27 -13.27 1 59.94 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . B 2 -10.329 -9.333 -12.683 1 57.14 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . B 2 -10.068 -10.688 -12.316 1 53.63 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . B 2 -10.58 -8.356 -11.527 1 53.86 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . B 2 -9.713 -8.559 -10.416 1 63.12 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . B 2 -10.264 -7.005 -12.192 1 54.14 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . B 2 -11.452 -6.335 -12.714 1 51.5 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . B 2 -11.924 -6.368 -14.005 1 49.6 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . B 2 -13.043 -5.71 -14.177 1 43.43 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . B 2 -13.341 -5.216 -12.915 1 45.31 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . B 2 -14.402 -4.431 -12.422 1 43.72 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . B 2 -15.407 -3.984 -13.181 1 43.97 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . B 2 -14.397 -4.119 -11.106 1 41.31 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . B 2 -13.392 -4.563 -10.344 1 47.54 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . B 2 -12.334 -5.301 -10.697 1 43.31 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . B 2 -12.368 -5.599 -12.002 1 42.85 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #