data_6K7I # _model_server_result.job_id QKK8pQAL3nC2hKUex-Z5lw _model_server_result.datetime_utc '2025-07-17 07:13:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k7i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":403}' # _entry.id 6K7I # _exptl.entry_id 6K7I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K7I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K7I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG C 401 NAG 3 n C NAG 2 B 2 NAG C 402 NAG 3 n C MAN 3 B 3 MAN C 403 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 91 C CYS 91 1_555 B SG CYS 104 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 B SG CYS 94 C CYS 94 1_555 B SG CYS 102 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf3 B SG CYS 157 C CYS 157 1_555 B SG CYS 171 C CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 B ND2 ASN 107 C ASN 107 1_555 F C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 B ND2 ASN 180 C ASN 180 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? covale ? covale3 B ND2 ASN 294 C ASN 294 1_555 E C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale4 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 C O4 NAG . B NAG 2 1_555 C C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 479 n n CBA CAB Y01 sing 480 n n CBA CAN Y01 sing 481 n n CAN CAJ Y01 sing 482 n n CAJ CAO Y01 sing 483 n n CAO CBB Y01 sing 484 n n CBB CAC Y01 sing 485 n n CBB CBE Y01 sing 486 n n CBE CAP Y01 sing 487 n n CBE CBI Y01 sing 488 n n CAP CAQ Y01 sing 489 n n CAQ CBG Y01 sing 490 n n CBG CBI Y01 sing 491 n n CBG CBD Y01 sing 492 n n CBI CAE Y01 sing 493 n n CBI CAU Y01 sing 494 n n CAU CAS Y01 sing 495 n n CAS CBF Y01 sing 496 n n CBF CBD Y01 sing 497 n n CBF CBH Y01 sing 498 n n CBD CAK Y01 sing 499 n n CAK CAI Y01 sing 500 n n CAI CAZ Y01 doub 501 n n CAZ CAV Y01 sing 502 n n CAZ CBH Y01 sing 503 n n CAV CBC Y01 sing 504 n n CBH CAD Y01 sing 505 n n CBH CAT Y01 sing 506 n n CAT CAR Y01 sing 507 n n CAR CBC Y01 sing 508 n n CBC OAW Y01 sing 509 n n OAW CAY Y01 sing 510 n n CAY OAG Y01 doub 511 n n CAY CAM Y01 sing 512 n n CAM CAL Y01 sing 513 n n CAL CAX Y01 sing 514 n n CAX OAH Y01 sing 515 n n CAX OAF Y01 doub 516 n n CAA HAA1 Y01 sing 517 n n CAA HAA2 Y01 sing 518 n n CAA HAA3 Y01 sing 519 n n CBA HBA Y01 sing 520 n n CAB HAB1 Y01 sing 521 n n CAB HAB2 Y01 sing 522 n n CAB HAB3 Y01 sing 523 n n CAN HAN1 Y01 sing 524 n n CAN HAN2 Y01 sing 525 n n CAJ HAJ1 Y01 sing 526 n n CAJ HAJ2 Y01 sing 527 n n CAO HAO1 Y01 sing 528 n n CAO HAO2 Y01 sing 529 n n CBB HBB Y01 sing 530 n n CAC HAC1 Y01 sing 531 n n CAC HAC2 Y01 sing 532 n n CAC HAC3 Y01 sing 533 n n CBE HBE Y01 sing 534 n n CAP HAP1 Y01 sing 535 n n CAP HAP2 Y01 sing 536 n n CAQ HAQ1 Y01 sing 537 n n CAQ HAQ2 Y01 sing 538 n n CBG HBG Y01 sing 539 n n CBD HBD Y01 sing 540 n n CAE HAE1 Y01 sing 541 n n CAE HAE2 Y01 sing 542 n n CAE HAE3 Y01 sing 543 n n CAU HAU1 Y01 sing 544 n n CAU HAU2 Y01 sing 545 n n CAS HAS1 Y01 sing 546 n n CAS HAS2 Y01 sing 547 n n CBF HBF Y01 sing 548 n n CAK HAK1 Y01 sing 549 n n CAK HAK2 Y01 sing 550 n n CAI HAI Y01 sing 551 n n CAV HAV1 Y01 sing 552 n n CAV HAV2 Y01 sing 553 n n CBC HBC Y01 sing 554 n n CAD HAD1 Y01 sing 555 n n CAD HAD2 Y01 sing 556 n n CAD HAD3 Y01 sing 557 n n CAT HAT1 Y01 sing 558 n n CAT HAT2 Y01 sing 559 n n CAR HAR1 Y01 sing 560 n n CAR HAR2 Y01 sing 561 n n CAM HAM1 Y01 sing 562 n n CAM HAM2 Y01 sing 563 n n CAL HAL1 Y01 sing 564 n n CAL HAL2 Y01 sing 565 n n OAH HAH Y01 sing 566 n n # _atom_sites.entry_id 6K7I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACP A 1 1201 1201 ACP ACP . E 5 NAG C 1 401 404 NAG NAG . F 5 NAG C 1 402 405 NAG NAG . G 6 Y01 C 1 403 701 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . G 6 106.67 90.329 104.26 1 52.16 ? CAA Y01 403 C 1 HETATM 2 C CBA Y01 . . . G 6 108.06 90.292 103.657 1 52.16 ? CBA Y01 403 C 1 HETATM 3 C CAB Y01 . . . G 6 108.573 91.699 103.433 1 52.16 ? CAB Y01 403 C 1 HETATM 4 C CAN Y01 . . . G 6 108.078 89.503 102.366 1 52.16 ? CAN Y01 403 C 1 HETATM 5 C CAJ Y01 . . . G 6 109.439 89.112 101.872 1 52.16 ? CAJ Y01 403 C 1 HETATM 6 C CAO Y01 . . . G 6 109.852 89.806 100.598 1 52.16 ? CAO Y01 403 C 1 HETATM 7 C CBB Y01 . . . G 6 110.685 88.972 99.61 1 52.16 ? CBB Y01 403 C 1 HETATM 8 C CAC Y01 . . . G 6 111.467 87.871 100.32 1 52.16 ? CAC Y01 403 C 1 HETATM 9 C CBE Y01 . . . G 6 109.855 88.456 98.416 1 52.16 ? CBE Y01 403 C 1 HETATM 10 C CAP Y01 . . . G 6 108.367 88.911 98.418 1 52.16 ? CAP Y01 403 C 1 HETATM 11 C CAQ Y01 . . . G 6 108.108 89.527 97.04 1 52.16 ? CAQ Y01 403 C 1 HETATM 12 C CBG Y01 . . . G 6 109.045 88.696 96.179 1 52.16 ? CBG Y01 403 C 1 HETATM 13 C CBI Y01 . . . G 6 110.367 88.734 96.967 1 52.16 ? CBI Y01 403 C 1 HETATM 14 C CAE Y01 . . . G 6 111.031 90.12 96.914 1 52.16 ? CAE Y01 403 C 1 HETATM 15 C CAU Y01 . . . G 6 111.268 87.67 96.332 1 52.16 ? CAU Y01 403 C 1 HETATM 16 C CAS Y01 . . . G 6 111.455 87.893 94.825 1 52.16 ? CAS Y01 403 C 1 HETATM 17 C CBF Y01 . . . G 6 110.129 87.992 94.052 1 52.16 ? CBF Y01 403 C 1 HETATM 18 C CBD Y01 . . . G 6 109.193 89.025 94.702 1 52.16 ? CBD Y01 403 C 1 HETATM 19 C CAK Y01 . . . G 6 107.828 89.028 94.027 1 52.16 ? CAK Y01 403 C 1 HETATM 20 C CAI Y01 . . . G 6 107.907 88.882 92.545 1 52.16 ? CAI Y01 403 C 1 HETATM 21 C CAZ Y01 . . . G 6 108.986 88.533 91.869 1 52.16 ? CAZ Y01 403 C 1 HETATM 22 C CAV Y01 . . . G 6 108.909 88.367 90.369 1 52.16 ? CAV Y01 403 C 1 HETATM 23 C CBH Y01 . . . G 6 110.33 88.233 92.529 1 52.16 ? CBH Y01 403 C 1 HETATM 24 C CAD Y01 . . . G 6 111.255 89.431 92.261 1 52.16 ? CAD Y01 403 C 1 HETATM 25 C CAT Y01 . . . G 6 110.94 86.952 91.909 1 52.16 ? CAT Y01 403 C 1 HETATM 26 C CAR Y01 . . . G 6 110.808 86.834 90.39 1 52.16 ? CAR Y01 403 C 1 HETATM 27 C CBC Y01 . . . G 6 109.367 86.984 89.994 1 52.16 ? CBC Y01 403 C 1 HETATM 28 O OAW Y01 . . . G 6 109.109 86.707 88.58 1 52.16 ? OAW Y01 403 C 1 HETATM 29 C CAY Y01 . . . G 6 109.925 87.145 87.628 1 52.16 ? CAY Y01 403 C 1 HETATM 30 O OAG Y01 . . . G 6 110.249 88.286 87.482 1 52.16 ? OAG Y01 403 C 1 HETATM 31 C CAM Y01 . . . G 6 110.399 86.023 86.755 1 52.16 ? CAM Y01 403 C 1 HETATM 32 C CAL Y01 . . . G 6 109.368 85.32 85.902 1 52.16 ? CAL Y01 403 C 1 HETATM 33 C CAX Y01 . . . G 6 108.944 86.083 84.662 1 52.16 ? CAX Y01 403 C 1 HETATM 34 O OAH Y01 . . . G 6 108.142 85.534 83.879 1 52.16 ? OAH Y01 403 C 1 HETATM 35 O OAF Y01 . . . G 6 109.422 87.219 84.48 1 52.16 ? OAF Y01 403 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #