data_6K7J
#
_model_server_result.job_id            fl5odrpquWyk7dyjBfpZeQ 
_model_server_result.datetime_utc      '2025-01-07 18:41:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k7j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":403}' 
#
_entry.id    6K7J 
#
_exptl.entry_id    6K7J 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          7 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K7J 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K7J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    3 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 B 1 NAG C 401 NAG 
3 n C NAG 2 B 2 NAG C 402 NAG 
3 n C MAN 3 B 3 MAN C 403 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 91 C CYS 91 1_555 B SG CYS 104 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 B SG CYS 94 C CYS 94 1_555 B SG CYS 102 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf3 B SG CYS 157 C CYS 157 1_555 B SG CYS 171 C CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
covale ? covale1 B ND2 ASN 107 C ASN 107 1_555 G C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale2 B ND2 ASN 180 C ASN 180 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? 
covale ? covale3 B ND2 ASN 294 C ASN 294 1_555 F C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale4 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale5 C O4 NAG . B NAG 2 1_555 C C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
metalc ? metalc1 A OD2 ASP 414 A ASP 409 1_555 E MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc2 A O THR 416 A THR 411 1_555 E MG MG . A MG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 479 n n 
CBA CAB Y01 sing 480 n n 
CBA CAN Y01 sing 481 n n 
CAN CAJ Y01 sing 482 n n 
CAJ CAO Y01 sing 483 n n 
CAO CBB Y01 sing 484 n n 
CBB CAC Y01 sing 485 n n 
CBB CBE Y01 sing 486 n n 
CBE CAP Y01 sing 487 n n 
CBE CBI Y01 sing 488 n n 
CAP CAQ Y01 sing 489 n n 
CAQ CBG Y01 sing 490 n n 
CBG CBI Y01 sing 491 n n 
CBG CBD Y01 sing 492 n n 
CBI CAE Y01 sing 493 n n 
CBI CAU Y01 sing 494 n n 
CAU CAS Y01 sing 495 n n 
CAS CBF Y01 sing 496 n n 
CBF CBD Y01 sing 497 n n 
CBF CBH Y01 sing 498 n n 
CBD CAK Y01 sing 499 n n 
CAK CAI Y01 sing 500 n n 
CAI CAZ Y01 doub 501 n n 
CAZ CAV Y01 sing 502 n n 
CAZ CBH Y01 sing 503 n n 
CAV CBC Y01 sing 504 n n 
CBH CAD Y01 sing 505 n n 
CBH CAT Y01 sing 506 n n 
CAT CAR Y01 sing 507 n n 
CAR CBC Y01 sing 508 n n 
CBC OAW Y01 sing 509 n n 
OAW CAY Y01 sing 510 n n 
CAY OAG Y01 doub 511 n n 
CAY CAM Y01 sing 512 n n 
CAM CAL Y01 sing 513 n n 
CAL CAX Y01 sing 514 n n 
CAX OAH Y01 sing 515 n n 
CAX OAF Y01 doub 516 n n 
CAA HAA1 Y01 sing 517 n n 
CAA HAA2 Y01 sing 518 n n 
CAA HAA3 Y01 sing 519 n n 
CBA HBA Y01 sing 520 n n 
CAB HAB1 Y01 sing 521 n n 
CAB HAB2 Y01 sing 522 n n 
CAB HAB3 Y01 sing 523 n n 
CAN HAN1 Y01 sing 524 n n 
CAN HAN2 Y01 sing 525 n n 
CAJ HAJ1 Y01 sing 526 n n 
CAJ HAJ2 Y01 sing 527 n n 
CAO HAO1 Y01 sing 528 n n 
CAO HAO2 Y01 sing 529 n n 
CBB HBB Y01 sing 530 n n 
CAC HAC1 Y01 sing 531 n n 
CAC HAC2 Y01 sing 532 n n 
CAC HAC3 Y01 sing 533 n n 
CBE HBE Y01 sing 534 n n 
CAP HAP1 Y01 sing 535 n n 
CAP HAP2 Y01 sing 536 n n 
CAQ HAQ1 Y01 sing 537 n n 
CAQ HAQ2 Y01 sing 538 n n 
CBG HBG Y01 sing 539 n n 
CBD HBD Y01 sing 540 n n 
CAE HAE1 Y01 sing 541 n n 
CAE HAE2 Y01 sing 542 n n 
CAE HAE3 Y01 sing 543 n n 
CAU HAU1 Y01 sing 544 n n 
CAU HAU2 Y01 sing 545 n n 
CAS HAS1 Y01 sing 546 n n 
CAS HAS2 Y01 sing 547 n n 
CBF HBF Y01 sing 548 n n 
CAK HAK1 Y01 sing 549 n n 
CAK HAK2 Y01 sing 550 n n 
CAI HAI Y01 sing 551 n n 
CAV HAV1 Y01 sing 552 n n 
CAV HAV2 Y01 sing 553 n n 
CBC HBC Y01 sing 554 n n 
CAD HAD1 Y01 sing 555 n n 
CAD HAD2 Y01 sing 556 n n 
CAD HAD3 Y01 sing 557 n n 
CAT HAT1 Y01 sing 558 n n 
CAT HAT2 Y01 sing 559 n n 
CAR HAR1 Y01 sing 560 n n 
CAR HAR2 Y01 sing 561 n n 
CAM HAM1 Y01 sing 562 n n 
CAM HAM2 Y01 sing 563 n n 
CAL HAL1 Y01 sing 564 n n 
CAL HAL2 Y01 sing 565 n n 
OAH HAH Y01 sing 566 n n 
#
_atom_sites.entry_id                     6K7J 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ACP A 1 1201 1201 ACP ACP . 
E 5 MG A 1 1202 1 MG MG . 
F 6 NAG C 1 401 404 NAG NAG . 
G 6 NAG C 1 402 405 NAG NAG . 
H 7 Y01 C 1 403 701 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . H 7 106.556 90.681 104.323 1 51.67 ? CAA Y01 403 C 1 
HETATM 2 C CBA Y01 . . . H 7 107.948 90.457 103.767 1 51.67 ? CBA Y01 403 C 1 
HETATM 3 C CAB Y01 . . . H 7 108.618 91.79 103.508 1 51.67 ? CAB Y01 403 C 1 
HETATM 4 C CAN Y01 . . . H 7 107.909 89.602 102.506 1 51.67 ? CAN Y01 403 C 1 
HETATM 5 C CAJ Y01 . . . H 7 109.222 89.009 102.066 1 51.67 ? CAJ Y01 403 C 1 
HETATM 6 C CAO Y01 . . . H 7 109.822 89.672 100.841 1 51.67 ? CAO Y01 403 C 1 
HETATM 7 C CBB Y01 . . . H 7 110.493 88.74 99.816 1 51.67 ? CBB Y01 403 C 1 
HETATM 8 C CAC Y01 . . . H 7 111.013 87.463 100.474 1 51.67 ? CAC Y01 403 C 1 
HETATM 9 C CBE Y01 . . . H 7 109.614 88.482 98.573 1 51.67 ? CBE Y01 403 C 1 
HETATM 10 C CAP Y01 . . . H 7 108.212 89.157 98.614 1 51.67 ? CAP Y01 403 C 1 
HETATM 11 C CAQ Y01 . . . H 7 107.907 89.636 97.189 1 51.67 ? CAQ Y01 403 C 1 
HETATM 12 C CBG Y01 . . . H 7 108.851 88.789 96.349 1 51.67 ? CBG Y01 403 C 1 
HETATM 13 C CBI Y01 . . . H 7 110.163 88.821 97.154 1 51.67 ? CBI Y01 403 C 1 
HETATM 14 C CAE Y01 . . . H 7 110.806 90.217 97.168 1 51.67 ? CAE Y01 403 C 1 
HETATM 15 C CAU Y01 . . . H 7 111.1 87.793 96.51 1 51.67 ? CAU Y01 403 C 1 
HETATM 16 C CAS Y01 . . . H 7 111.305 88.055 95.012 1 51.67 ? CAS Y01 403 C 1 
HETATM 17 C CBF Y01 . . . H 7 109.984 88.112 94.228 1 51.67 ? CBF Y01 403 C 1 
HETATM 18 C CBD Y01 . . . H 7 109.007 89.114 94.871 1 51.67 ? CBD Y01 403 C 1 
HETATM 19 C CAK Y01 . . . H 7 107.65 89.07 94.182 1 51.67 ? CAK Y01 403 C 1 
HETATM 20 C CAI Y01 . . . H 7 107.757 88.971 92.697 1 51.67 ? CAI Y01 403 C 1 
HETATM 21 C CAZ Y01 . . . H 7 108.847 88.632 92.029 1 51.67 ? CAZ Y01 403 C 1 
HETATM 22 C CAV Y01 . . . H 7 108.785 88.478 90.527 1 51.67 ? CAV Y01 403 C 1 
HETATM 23 C CBH Y01 . . . H 7 110.186 88.328 92.699 1 51.67 ? CBH Y01 403 C 1 
HETATM 24 C CAD Y01 . . . H 7 111.139 89.498 92.404 1 51.67 ? CAD Y01 403 C 1 
HETATM 25 C CAT Y01 . . . H 7 110.769 87.027 92.099 1 51.67 ? CAT Y01 403 C 1 
HETATM 26 C CAR Y01 . . . H 7 110.661 86.908 90.578 1 51.67 ? CAR Y01 403 C 1 
HETATM 27 C CBC Y01 . . . H 7 109.234 87.095 90.142 1 51.67 ? CBC Y01 403 C 1 
HETATM 28 O OAW Y01 . . . H 7 109.019 86.854 88.713 1 51.67 ? OAW Y01 403 C 1 
HETATM 29 C CAY Y01 . . . H 7 109.873 87.293 87.788 1 51.67 ? CAY Y01 403 C 1 
HETATM 30 O OAG Y01 . . . H 7 110.308 88.407 87.726 1 51.67 ? OAG Y01 403 C 1 
HETATM 31 C CAM Y01 . . . H 7 110.249 86.194 86.837 1 51.67 ? CAM Y01 403 C 1 
HETATM 32 C CAL Y01 . . . H 7 109.125 85.502 86.096 1 51.67 ? CAL Y01 403 C 1 
HETATM 33 C CAX Y01 . . . H 7 108.574 86.278 84.915 1 51.67 ? CAX Y01 403 C 1 
HETATM 34 O OAH Y01 . . . H 7 107.564 85.834 84.335 1 51.67 ? OAH Y01 403 C 1 
HETATM 35 O OAF Y01 . . . H 7 109.172 87.311 84.565 1 51.67 ? OAF Y01 403 C 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           35 
#