data_6K7K # _model_server_result.job_id LTm4o6GzxpNTKyqfA4qUug _model_server_result.datetime_utc '2025-01-07 18:58:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k7k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":403}' # _entry.id 6K7K # _exptl.entry_id 6K7K _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 8 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K7K _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K7K _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG C 401 NAG 3 n C NAG 2 B 2 NAG C 402 NAG 3 n C MAN 3 B 3 MAN C 403 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 91 C CYS 91 1_555 B SG CYS 104 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 94 C CYS 94 1_555 B SG CYS 102 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 157 C CYS 157 1_555 B SG CYS 171 C CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 B ND2 ASN 107 C ASN 107 1_555 I C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 B ND2 ASN 180 C ASN 180 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? covale ? covale3 B ND2 ASN 294 C ASN 294 1_555 H C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale4 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 C O4 NAG . B NAG 2 1_555 C C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 A OD1 ASP 414 A ASP 409 1_555 G MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? metalc ? metalc2 A O THR 416 A THR 411 1_555 G MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc3 A OD1 ASP 791 A ASP 786 1_555 G MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc4 A OE2 GLU 812 A GLU 807 1_555 F MG MG . A MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc5 A OE1 GLU 812 A GLU 807 1_555 G MG MG . A MG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc6 D O2B ADP . A ADP 1201 1_555 F MG MG . A MG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 476 n n CBA CAB Y01 sing 477 n n CBA CAN Y01 sing 478 n n CAN CAJ Y01 sing 479 n n CAJ CAO Y01 sing 480 n n CAO CBB Y01 sing 481 n n CBB CAC Y01 sing 482 n n CBB CBE Y01 sing 483 n n CBE CAP Y01 sing 484 n n CBE CBI Y01 sing 485 n n CAP CAQ Y01 sing 486 n n CAQ CBG Y01 sing 487 n n CBG CBI Y01 sing 488 n n CBG CBD Y01 sing 489 n n CBI CAE Y01 sing 490 n n CBI CAU Y01 sing 491 n n CAU CAS Y01 sing 492 n n CAS CBF Y01 sing 493 n n CBF CBD Y01 sing 494 n n CBF CBH Y01 sing 495 n n CBD CAK Y01 sing 496 n n CAK CAI Y01 sing 497 n n CAI CAZ Y01 doub 498 n n CAZ CAV Y01 sing 499 n n CAZ CBH Y01 sing 500 n n CAV CBC Y01 sing 501 n n CBH CAD Y01 sing 502 n n CBH CAT Y01 sing 503 n n CAT CAR Y01 sing 504 n n CAR CBC Y01 sing 505 n n CBC OAW Y01 sing 506 n n OAW CAY Y01 sing 507 n n CAY OAG Y01 doub 508 n n CAY CAM Y01 sing 509 n n CAM CAL Y01 sing 510 n n CAL CAX Y01 sing 511 n n CAX OAH Y01 sing 512 n n CAX OAF Y01 doub 513 n n CAA HAA1 Y01 sing 514 n n CAA HAA2 Y01 sing 515 n n CAA HAA3 Y01 sing 516 n n CBA HBA Y01 sing 517 n n CAB HAB1 Y01 sing 518 n n CAB HAB2 Y01 sing 519 n n CAB HAB3 Y01 sing 520 n n CAN HAN1 Y01 sing 521 n n CAN HAN2 Y01 sing 522 n n CAJ HAJ1 Y01 sing 523 n n CAJ HAJ2 Y01 sing 524 n n CAO HAO1 Y01 sing 525 n n CAO HAO2 Y01 sing 526 n n CBB HBB Y01 sing 527 n n CAC HAC1 Y01 sing 528 n n CAC HAC2 Y01 sing 529 n n CAC HAC3 Y01 sing 530 n n CBE HBE Y01 sing 531 n n CAP HAP1 Y01 sing 532 n n CAP HAP2 Y01 sing 533 n n CAQ HAQ1 Y01 sing 534 n n CAQ HAQ2 Y01 sing 535 n n CBG HBG Y01 sing 536 n n CBD HBD Y01 sing 537 n n CAE HAE1 Y01 sing 538 n n CAE HAE2 Y01 sing 539 n n CAE HAE3 Y01 sing 540 n n CAU HAU1 Y01 sing 541 n n CAU HAU2 Y01 sing 542 n n CAS HAS1 Y01 sing 543 n n CAS HAS2 Y01 sing 544 n n CBF HBF Y01 sing 545 n n CAK HAK1 Y01 sing 546 n n CAK HAK2 Y01 sing 547 n n CAI HAI Y01 sing 548 n n CAV HAV1 Y01 sing 549 n n CAV HAV2 Y01 sing 550 n n CBC HBC Y01 sing 551 n n CAD HAD1 Y01 sing 552 n n CAD HAD2 Y01 sing 553 n n CAD HAD3 Y01 sing 554 n n CAT HAT1 Y01 sing 555 n n CAT HAT2 Y01 sing 556 n n CAR HAR1 Y01 sing 557 n n CAR HAR2 Y01 sing 558 n n CAM HAM1 Y01 sing 559 n n CAM HAM2 Y01 sing 560 n n CAL HAL1 Y01 sing 561 n n CAL HAL2 Y01 sing 562 n n OAH HAH Y01 sing 563 n n # _atom_sites.entry_id 6K7K _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ADP A 1 1201 1101 ADP ADP . E 5 ALF A 1 1202 1201 ALF ALF . F 6 MG A 1 1203 1 MG MG . G 6 MG A 1 1204 2 MG MG . H 7 NAG C 1 401 404 NAG NAG . I 7 NAG C 1 402 405 NAG NAG . J 8 Y01 C 1 403 501 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 8 104.039 87.538 98.904 1 54.47 ? CAA Y01 403 C 1 HETATM 2 C CBA Y01 . . . J 8 102.998 86.503 98.546 1 54.47 ? CBA Y01 403 C 1 HETATM 3 C CAB Y01 . . . J 8 102.055 86.267 99.712 1 54.47 ? CAB Y01 403 C 1 HETATM 4 C CAN Y01 . . . J 8 103.652 85.213 98.089 1 54.47 ? CAN Y01 403 C 1 HETATM 5 C CAJ Y01 . . . J 8 102.689 84.123 97.743 1 54.47 ? CAJ Y01 403 C 1 HETATM 6 C CAO Y01 . . . J 8 103.304 82.999 96.942 1 54.47 ? CAO Y01 403 C 1 HETATM 7 C CBB Y01 . . . J 8 104.378 83.38 95.91 1 54.47 ? CBB Y01 403 C 1 HETATM 8 C CAC Y01 . . . J 8 105.624 82.55 96.215 1 54.47 ? CAC Y01 403 C 1 HETATM 9 C CBE Y01 . . . J 8 103.81 83.249 94.474 1 54.47 ? CBE Y01 403 C 1 HETATM 10 C CAP Y01 . . . J 8 102.643 84.249 94.223 1 54.47 ? CAP Y01 403 C 1 HETATM 11 C CAQ Y01 . . . J 8 102.766 84.736 92.775 1 54.47 ? CAQ Y01 403 C 1 HETATM 12 C CBG Y01 . . . J 8 103.547 83.596 92.144 1 54.47 ? CBG Y01 403 C 1 HETATM 13 C CBI Y01 . . . J 8 104.672 83.34 93.167 1 54.47 ? CBI Y01 403 C 1 HETATM 14 C CAE Y01 . . . J 8 105.644 84.533 93.222 1 54.47 ? CAE Y01 403 C 1 HETATM 15 C CAU Y01 . . . J 8 105.381 82.063 92.695 1 54.47 ? CAU Y01 403 C 1 HETATM 16 C CAS Y01 . . . J 8 105.871 82.152 91.244 1 54.47 ? CAS Y01 403 C 1 HETATM 17 C CBF Y01 . . . J 8 104.739 82.473 90.257 1 54.47 ? CBF Y01 403 C 1 HETATM 18 C CBD Y01 . . . J 8 103.992 83.743 90.698 1 54.47 ? CBD Y01 403 C 1 HETATM 19 C CAK Y01 . . . J 8 102.781 83.992 89.809 1 54.47 ? CAK Y01 403 C 1 HETATM 20 C CAI Y01 . . . J 8 103.067 83.751 88.365 1 54.47 ? CAI Y01 403 C 1 HETATM 21 C CAZ Y01 . . . J 8 104.157 83.17 87.894 1 54.47 ? CAZ Y01 403 C 1 HETATM 22 C CAV Y01 . . . J 8 104.376 83.055 86.402 1 54.47 ? CAV Y01 403 C 1 HETATM 23 C CBH Y01 . . . J 8 105.222 82.531 88.78 1 54.47 ? CBH Y01 403 C 1 HETATM 24 C CAD Y01 . . . J 8 106.511 83.36 88.64 1 54.47 ? CAD Y01 403 C 1 HETATM 25 C CAT Y01 . . . J 8 105.46 81.094 88.261 1 54.47 ? CAT Y01 403 C 1 HETATM 26 C CAR Y01 . . . J 8 105.653 81 86.745 1 54.47 ? CAR Y01 403 C 1 HETATM 27 C CBC Y01 . . . J 8 104.489 81.607 86.009 1 54.47 ? CBC Y01 403 C 1 HETATM 28 O OAW Y01 . . . J 8 104.675 81.556 84.562 1 54.47 ? OAW Y01 403 C 1 HETATM 29 C CAY Y01 . . . J 8 104.232 80.485 83.906 1 54.47 ? CAY Y01 403 C 1 HETATM 30 O OAG Y01 . . . J 8 103.919 79.461 84.439 1 54.47 ? OAG Y01 403 C 1 HETATM 31 C CAM Y01 . . . J 8 104.104 80.728 82.428 1 54.47 ? CAM Y01 403 C 1 HETATM 32 C CAL Y01 . . . J 8 103.501 79.562 81.665 1 54.47 ? CAL Y01 403 C 1 HETATM 33 C CAX Y01 . . . J 8 103.133 79.846 80.218 1 54.47 ? CAX Y01 403 C 1 HETATM 34 O OAH Y01 . . . J 8 101.972 79.585 79.843 1 54.47 ? OAH Y01 403 C 1 HETATM 35 O OAF Y01 . . . J 8 104.005 80.334 79.471 1 54.47 ? OAF Y01 403 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 35 #