data_6K7L # _model_server_result.job_id iAdbAOlULxH9hD9oTmpbZQ _model_server_result.datetime_utc '2024-11-21 13:49:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k7l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1803}' # _entry.id 6K7L # _exptl.entry_id 6K7L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K7L _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K7L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG C 401 NAG 3 n C NAG 2 B 2 NAG C 402 NAG 3 n C MAN 3 B 3 MAN C 403 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 91 C CYS 91 1_555 B SG CYS 104 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 94 C CYS 94 1_555 B SG CYS 102 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 157 C CYS 157 1_555 B SG CYS 171 C CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 B ND2 ASN 107 C ASN 107 1_555 H C1 NAG . C NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 B ND2 ASN 180 C ASN 180 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale3 B ND2 ASN 294 C ASN 294 1_555 G C1 NAG . C NAG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale4 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 C O4 NAG . B NAG 2 1_555 C C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? metalc ? metalc1 A OD2 ASP 414 A ASP 409 1_555 E MG MG . A MG 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc2 A O THR 416 A THR 411 1_555 E MG MG . A MG 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc3 A OD1 ASP 791 A ASP 786 1_555 E MG MG . A MG 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 431 n n CBA CAB Y01 sing 432 n n CBA CAN Y01 sing 433 n n CAN CAJ Y01 sing 434 n n CAJ CAO Y01 sing 435 n n CAO CBB Y01 sing 436 n n CBB CAC Y01 sing 437 n n CBB CBE Y01 sing 438 n n CBE CAP Y01 sing 439 n n CBE CBI Y01 sing 440 n n CAP CAQ Y01 sing 441 n n CAQ CBG Y01 sing 442 n n CBG CBI Y01 sing 443 n n CBG CBD Y01 sing 444 n n CBI CAE Y01 sing 445 n n CBI CAU Y01 sing 446 n n CAU CAS Y01 sing 447 n n CAS CBF Y01 sing 448 n n CBF CBD Y01 sing 449 n n CBF CBH Y01 sing 450 n n CBD CAK Y01 sing 451 n n CAK CAI Y01 sing 452 n n CAI CAZ Y01 doub 453 n n CAZ CAV Y01 sing 454 n n CAZ CBH Y01 sing 455 n n CAV CBC Y01 sing 456 n n CBH CAD Y01 sing 457 n n CBH CAT Y01 sing 458 n n CAT CAR Y01 sing 459 n n CAR CBC Y01 sing 460 n n CBC OAW Y01 sing 461 n n OAW CAY Y01 sing 462 n n CAY OAG Y01 doub 463 n n CAY CAM Y01 sing 464 n n CAM CAL Y01 sing 465 n n CAL CAX Y01 sing 466 n n CAX OAH Y01 sing 467 n n CAX OAF Y01 doub 468 n n CAA HAA1 Y01 sing 469 n n CAA HAA2 Y01 sing 470 n n CAA HAA3 Y01 sing 471 n n CBA HBA Y01 sing 472 n n CAB HAB1 Y01 sing 473 n n CAB HAB2 Y01 sing 474 n n CAB HAB3 Y01 sing 475 n n CAN HAN1 Y01 sing 476 n n CAN HAN2 Y01 sing 477 n n CAJ HAJ1 Y01 sing 478 n n CAJ HAJ2 Y01 sing 479 n n CAO HAO1 Y01 sing 480 n n CAO HAO2 Y01 sing 481 n n CBB HBB Y01 sing 482 n n CAC HAC1 Y01 sing 483 n n CAC HAC2 Y01 sing 484 n n CAC HAC3 Y01 sing 485 n n CBE HBE Y01 sing 486 n n CAP HAP1 Y01 sing 487 n n CAP HAP2 Y01 sing 488 n n CAQ HAQ1 Y01 sing 489 n n CAQ HAQ2 Y01 sing 490 n n CBG HBG Y01 sing 491 n n CBD HBD Y01 sing 492 n n CAE HAE1 Y01 sing 493 n n CAE HAE2 Y01 sing 494 n n CAE HAE3 Y01 sing 495 n n CAU HAU1 Y01 sing 496 n n CAU HAU2 Y01 sing 497 n n CAS HAS1 Y01 sing 498 n n CAS HAS2 Y01 sing 499 n n CBF HBF Y01 sing 500 n n CAK HAK1 Y01 sing 501 n n CAK HAK2 Y01 sing 502 n n CAI HAI Y01 sing 503 n n CAV HAV1 Y01 sing 504 n n CAV HAV2 Y01 sing 505 n n CBC HBC Y01 sing 506 n n CAD HAD1 Y01 sing 507 n n CAD HAD2 Y01 sing 508 n n CAD HAD3 Y01 sing 509 n n CAT HAT1 Y01 sing 510 n n CAT HAT2 Y01 sing 511 n n CAR HAR1 Y01 sing 512 n n CAR HAR2 Y01 sing 513 n n CAM HAM1 Y01 sing 514 n n CAM HAM2 Y01 sing 515 n n CAL HAL1 Y01 sing 516 n n CAL HAL2 Y01 sing 517 n n OAH HAH Y01 sing 518 n n # _atom_sites.entry_id 6K7L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 BEF A 1 1801 1801 BEF BEF . E 5 MG A 1 1802 1901 MG MG . F 6 Y01 A 1 1803 701 Y01 Y01 . G 7 NAG C 1 404 404 NAG NAG . H 7 NAG C 1 405 405 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . F 6 104.106 94.836 107.284 1 59.48 ? CAA Y01 1803 A 1 HETATM 2 C CBA Y01 . . . F 6 103.783 93.745 108.291 1 59.48 ? CBA Y01 1803 A 1 HETATM 3 C CAB Y01 . . . F 6 104.795 93.749 109.422 1 59.48 ? CAB Y01 1803 A 1 HETATM 4 C CAN Y01 . . . F 6 103.756 92.4 107.613 1 59.48 ? CAN Y01 1803 A 1 HETATM 5 C CAJ Y01 . . . F 6 104.987 92.077 106.828 1 59.48 ? CAJ Y01 1803 A 1 HETATM 6 C CAO Y01 . . . F 6 104.832 90.813 106.056 1 59.48 ? CAO Y01 1803 A 1 HETATM 7 C CBB Y01 . . . F 6 105.877 90.57 104.963 1 59.48 ? CBB Y01 1803 A 1 HETATM 8 C CAC Y01 . . . F 6 106.862 89.508 105.444 1 59.48 ? CAC Y01 1803 A 1 HETATM 9 C CBE Y01 . . . F 6 105.158 90.235 103.642 1 59.48 ? CBE Y01 1803 A 1 HETATM 10 C CAP Y01 . . . F 6 103.947 91.179 103.395 1 59.48 ? CAP Y01 1803 A 1 HETATM 11 C CAQ Y01 . . . F 6 103.994 91.594 101.919 1 59.48 ? CAQ Y01 1803 A 1 HETATM 12 C CBG Y01 . . . F 6 104.754 90.43 101.306 1 59.48 ? CBG Y01 1803 A 1 HETATM 13 C CBI Y01 . . . F 6 105.929 90.23 102.285 1 59.48 ? CBI Y01 1803 A 1 HETATM 14 C CAE Y01 . . . F 6 106.925 91.401 102.25 1 59.48 ? CAE Y01 1803 A 1 HETATM 15 C CAU Y01 . . . F 6 106.612 88.922 101.873 1 59.48 ? CAU Y01 1803 A 1 HETATM 16 C CAS Y01 . . . F 6 107.069 88.961 100.411 1 59.48 ? CAS Y01 1803 A 1 HETATM 17 C CBF Y01 . . . F 6 105.908 89.225 99.44 1 59.48 ? CBF Y01 1803 A 1 HETATM 18 C CBD Y01 . . . F 6 105.124 90.489 99.832 1 59.48 ? CBD Y01 1803 A 1 HETATM 19 C CAK Y01 . . . F 6 103.87 90.605 98.977 1 59.48 ? CAK Y01 1803 A 1 HETATM 20 C CAI Y01 . . . F 6 104.13 90.315 97.535 1 59.48 ? CAI Y01 1803 A 1 HETATM 21 C CAZ Y01 . . . F 6 105.226 89.743 97.061 1 59.48 ? CAZ Y01 1803 A 1 HETATM 22 C CAV Y01 . . . F 6 105.4 89.535 95.571 1 59.48 ? CAV Y01 1803 A 1 HETATM 23 C CBH Y01 . . . F 6 106.357 89.238 97.953 1 59.48 ? CBH Y01 1803 A 1 HETATM 24 C CAD Y01 . . . F 6 107.58 90.149 97.743 1 59.48 ? CAD Y01 1803 A 1 HETATM 25 C CAT Y01 . . . F 6 106.694 87.795 97.52 1 59.48 ? CAT Y01 1803 A 1 HETATM 26 C CAR Y01 . . . F 6 106.913 87.642 96.014 1 59.48 ? CAR Y01 1803 A 1 HETATM 27 C CBC Y01 . . . F 6 105.713 88.097 95.232 1 59.48 ? CBC Y01 1803 A 1 HETATM 28 O OAW Y01 . . . F 6 106.035 88.065 93.811 1 59.48 ? OAW Y01 1803 A 1 HETATM 29 C CAY Y01 . . . F 6 106.309 86.904 93.226 1 59.48 ? CAY Y01 1803 A 1 HETATM 30 O OAG Y01 . . . F 6 107.413 86.565 92.914 1 59.48 ? OAG Y01 1803 A 1 HETATM 31 C CAM Y01 . . . F 6 105.076 86.111 92.931 1 59.48 ? CAM Y01 1803 A 1 HETATM 32 C CAL Y01 . . . F 6 104.776 85.917 91.46 1 59.48 ? CAL Y01 1803 A 1 HETATM 33 C CAX Y01 . . . F 6 103.518 85.121 91.164 1 59.48 ? CAX Y01 1803 A 1 HETATM 34 O OAH Y01 . . . F 6 102.885 84.652 92.12 1 59.48 ? OAH Y01 1803 A 1 HETATM 35 O OAF Y01 . . . F 6 103.172 84.979 89.978 1 59.48 ? OAF Y01 1803 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #