data_6K7M # _model_server_result.job_id 8n-oouHEIIdiwUH4UsrjjA _model_server_result.datetime_utc '2024-11-22 04:48:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k7m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1302}' # _entry.id 6K7M # _exptl.entry_id 6K7M _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K7M _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K7M _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG C 401 NAG 3 n C NAG 2 B 2 NAG C 402 NAG 3 n C MAN 3 B 3 MAN C 403 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 91 C CYS 91 1_555 B SG CYS 104 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 94 C CYS 94 1_555 B SG CYS 102 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 157 C CYS 157 1_555 B SG CYS 171 C CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 B ND2 ASN 107 C ASN 107 1_555 I C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 B ND2 ASN 180 C ASN 180 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale3 B ND2 ASN 294 C ASN 294 1_555 H C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 C O4 NAG . B NAG 2 1_555 C C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 A OD2 ASP 414 A ASP 409 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? metalc ? metalc2 A O THR 416 A THR 411 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc3 A OD1 ASP 791 A ASP 786 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 559 n n CBA CAB Y01 sing 560 n n CBA CAN Y01 sing 561 n n CAN CAJ Y01 sing 562 n n CAJ CAO Y01 sing 563 n n CAO CBB Y01 sing 564 n n CBB CAC Y01 sing 565 n n CBB CBE Y01 sing 566 n n CBE CAP Y01 sing 567 n n CBE CBI Y01 sing 568 n n CAP CAQ Y01 sing 569 n n CAQ CBG Y01 sing 570 n n CBG CBI Y01 sing 571 n n CBG CBD Y01 sing 572 n n CBI CAE Y01 sing 573 n n CBI CAU Y01 sing 574 n n CAU CAS Y01 sing 575 n n CAS CBF Y01 sing 576 n n CBF CBD Y01 sing 577 n n CBF CBH Y01 sing 578 n n CBD CAK Y01 sing 579 n n CAK CAI Y01 sing 580 n n CAI CAZ Y01 doub 581 n n CAZ CAV Y01 sing 582 n n CAZ CBH Y01 sing 583 n n CAV CBC Y01 sing 584 n n CBH CAD Y01 sing 585 n n CBH CAT Y01 sing 586 n n CAT CAR Y01 sing 587 n n CAR CBC Y01 sing 588 n n CBC OAW Y01 sing 589 n n OAW CAY Y01 sing 590 n n CAY OAG Y01 doub 591 n n CAY CAM Y01 sing 592 n n CAM CAL Y01 sing 593 n n CAL CAX Y01 sing 594 n n CAX OAH Y01 sing 595 n n CAX OAF Y01 doub 596 n n CAA HAA1 Y01 sing 597 n n CAA HAA2 Y01 sing 598 n n CAA HAA3 Y01 sing 599 n n CBA HBA Y01 sing 600 n n CAB HAB1 Y01 sing 601 n n CAB HAB2 Y01 sing 602 n n CAB HAB3 Y01 sing 603 n n CAN HAN1 Y01 sing 604 n n CAN HAN2 Y01 sing 605 n n CAJ HAJ1 Y01 sing 606 n n CAJ HAJ2 Y01 sing 607 n n CAO HAO1 Y01 sing 608 n n CAO HAO2 Y01 sing 609 n n CBB HBB Y01 sing 610 n n CAC HAC1 Y01 sing 611 n n CAC HAC2 Y01 sing 612 n n CAC HAC3 Y01 sing 613 n n CBE HBE Y01 sing 614 n n CAP HAP1 Y01 sing 615 n n CAP HAP2 Y01 sing 616 n n CAQ HAQ1 Y01 sing 617 n n CAQ HAQ2 Y01 sing 618 n n CBG HBG Y01 sing 619 n n CBD HBD Y01 sing 620 n n CAE HAE1 Y01 sing 621 n n CAE HAE2 Y01 sing 622 n n CAE HAE3 Y01 sing 623 n n CAU HAU1 Y01 sing 624 n n CAU HAU2 Y01 sing 625 n n CAS HAS1 Y01 sing 626 n n CAS HAS2 Y01 sing 627 n n CBF HBF Y01 sing 628 n n CAK HAK1 Y01 sing 629 n n CAK HAK2 Y01 sing 630 n n CAI HAI Y01 sing 631 n n CAV HAV1 Y01 sing 632 n n CAV HAV2 Y01 sing 633 n n CBC HBC Y01 sing 634 n n CAD HAD1 Y01 sing 635 n n CAD HAD2 Y01 sing 636 n n CAD HAD3 Y01 sing 637 n n CAT HAT1 Y01 sing 638 n n CAT HAT2 Y01 sing 639 n n CAR HAR1 Y01 sing 640 n n CAR HAR2 Y01 sing 641 n n CAM HAM1 Y01 sing 642 n n CAM HAM2 Y01 sing 643 n n CAL HAL1 Y01 sing 644 n n CAL HAL2 Y01 sing 645 n n OAH HAH Y01 sing 646 n n # _atom_sites.entry_id 6K7M _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ALF A 1 1301 1301 ALF ALF . E 5 Y01 A 1 1302 501 Y01 Y01 . F 6 MG A 1 1303 1 MG MG . G 7 D39 A 1 1304 1 D39 XXX . H 8 NAG C 1 401 404 NAG NAG . I 8 NAG C 1 402 405 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 5 106.964 88.553 99.371 1 44.21 ? CAA Y01 1302 A 1 HETATM 2 C CBA Y01 . . . E 5 106.222 89.471 98.41 1 44.21 ? CBA Y01 1302 A 1 HETATM 3 C CAB Y01 . . . E 5 105.054 90.137 99.112 1 44.21 ? CAB Y01 1302 A 1 HETATM 4 C CAN Y01 . . . E 5 107.159 90.492 97.77 1 44.21 ? CAN Y01 1302 A 1 HETATM 5 C CAJ Y01 . . . E 5 108.263 89.905 96.936 1 44.21 ? CAJ Y01 1302 A 1 HETATM 6 C CAO Y01 . . . E 5 107.744 89.014 95.843 1 44.21 ? CAO Y01 1302 A 1 HETATM 7 C CBB Y01 . . . E 5 108.801 88.254 95.028 1 44.21 ? CBB Y01 1302 A 1 HETATM 8 C CAC Y01 . . . E 5 109.488 87.205 95.895 1 44.21 ? CAC Y01 1302 A 1 HETATM 9 C CBE Y01 . . . E 5 108.213 87.669 93.726 1 44.21 ? CBE Y01 1302 A 1 HETATM 10 C CAP Y01 . . . E 5 106.76 88.14 93.43 1 44.21 ? CAP Y01 1302 A 1 HETATM 11 C CAQ Y01 . . . E 5 106.778 88.708 92.009 1 44.21 ? CAQ Y01 1302 A 1 HETATM 12 C CBG Y01 . . . E 5 107.825 87.815 91.368 1 44.21 ? CBG Y01 1302 A 1 HETATM 13 C CBI Y01 . . . E 5 108.984 87.865 92.38 1 44.21 ? CBI Y01 1302 A 1 HETATM 14 C CAE Y01 . . . E 5 109.685 89.235 92.385 1 44.21 ? CAE Y01 1302 A 1 HETATM 15 C CAU Y01 . . . E 5 109.953 86.755 91.958 1 44.21 ? CAU Y01 1302 A 1 HETATM 16 C CAS Y01 . . . E 5 110.419 86.914 90.502 1 44.21 ? CAS Y01 1302 A 1 HETATM 17 C CBF Y01 . . . E 5 109.268 87.03 89.487 1 44.21 ? CBF Y01 1302 A 1 HETATM 18 C CBD Y01 . . . E 5 108.242 88.086 89.933 1 44.21 ? CBD Y01 1302 A 1 HETATM 19 C CAK Y01 . . . E 5 107.028 88.071 89.015 1 44.21 ? CAK Y01 1302 A 1 HETATM 20 C CAI Y01 . . . E 5 107.408 88.01 87.574 1 44.21 ? CAI Y01 1302 A 1 HETATM 21 C CAZ Y01 . . . E 5 108.612 87.694 87.128 1 44.21 ? CAZ Y01 1302 A 1 HETATM 22 C CAV Y01 . . . E 5 108.892 87.691 85.643 1 44.21 ? CAV Y01 1302 A 1 HETATM 23 C CBH Y01 . . . E 5 109.77 87.284 88.036 1 44.21 ? CBH Y01 1302 A 1 HETATM 24 C CAD Y01 . . . E 5 110.82 88.408 87.995 1 44.21 ? CAD Y01 1302 A 1 HETATM 25 C CAT Y01 . . . E 5 110.38 85.98 87.473 1 44.21 ? CAT Y01 1302 A 1 HETATM 26 C CAR Y01 . . . E 5 110.655 86.025 85.968 1 44.21 ? CAR Y01 1302 A 1 HETATM 27 C CBC Y01 . . . E 5 109.408 86.35 85.191 1 44.21 ? CBC Y01 1302 A 1 HETATM 28 O OAW Y01 . . . E 5 109.722 86.48 83.774 1 44.21 ? OAW Y01 1302 A 1 HETATM 29 C CAY Y01 . . . E 5 109.834 85.385 83.03 1 44.21 ? CAY Y01 1302 A 1 HETATM 30 O OAG Y01 . . . E 5 109.595 84.28 83.425 1 44.21 ? OAG Y01 1302 A 1 HETATM 31 C CAM Y01 . . . E 5 110.315 85.701 81.643 1 44.21 ? CAM Y01 1302 A 1 HETATM 32 C CAL Y01 . . . E 5 109.347 85.488 80.501 1 44.21 ? CAL Y01 1302 A 1 HETATM 33 C CAX Y01 . . . E 5 108.804 84.076 80.368 1 44.21 ? CAX Y01 1302 A 1 HETATM 34 O OAH Y01 . . . E 5 109.616 83.143 80.225 1 44.21 ? OAH Y01 1302 A 1 HETATM 35 O OAF Y01 . . . E 5 107.569 83.914 80.398 1 44.21 ? OAF Y01 1302 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 894 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #