data_6K7N # _model_server_result.job_id 7p-p0_0UjIXwF5Llf6OUtA _model_server_result.datetime_utc '2024-11-22 09:44:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1302}' # _entry.id 6K7N # _exptl.entry_id 6K7N _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K7N _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 MAN NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 B 1 NAG C 401 NAG 3 n C NAG 2 B 2 NAG C 402 NAG 3 n C MAN 3 B 3 MAN C 403 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 91 C CYS 91 1_555 B SG CYS 104 C CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 B SG CYS 94 C CYS 94 1_555 B SG CYS 102 C CYS 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 B SG CYS 157 C CYS 157 1_555 B SG CYS 171 C CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 B ND2 ASN 107 C ASN 107 1_555 H C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 B ND2 ASN 180 C ASN 180 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale3 B ND2 ASN 294 C ASN 294 1_555 G C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale4 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 C O4 NAG . B NAG 2 1_555 C C1 MAN . B MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 A OD1 ASP 414 A ASP 409 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc2 A O THR 416 A THR 411 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc3 A OD1 ASP 791 A ASP 786 1_555 F MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 432 n n CBA CAB Y01 sing 433 n n CBA CAN Y01 sing 434 n n CAN CAJ Y01 sing 435 n n CAJ CAO Y01 sing 436 n n CAO CBB Y01 sing 437 n n CBB CAC Y01 sing 438 n n CBB CBE Y01 sing 439 n n CBE CAP Y01 sing 440 n n CBE CBI Y01 sing 441 n n CAP CAQ Y01 sing 442 n n CAQ CBG Y01 sing 443 n n CBG CBI Y01 sing 444 n n CBG CBD Y01 sing 445 n n CBI CAE Y01 sing 446 n n CBI CAU Y01 sing 447 n n CAU CAS Y01 sing 448 n n CAS CBF Y01 sing 449 n n CBF CBD Y01 sing 450 n n CBF CBH Y01 sing 451 n n CBD CAK Y01 sing 452 n n CAK CAI Y01 sing 453 n n CAI CAZ Y01 doub 454 n n CAZ CAV Y01 sing 455 n n CAZ CBH Y01 sing 456 n n CAV CBC Y01 sing 457 n n CBH CAD Y01 sing 458 n n CBH CAT Y01 sing 459 n n CAT CAR Y01 sing 460 n n CAR CBC Y01 sing 461 n n CBC OAW Y01 sing 462 n n OAW CAY Y01 sing 463 n n CAY OAG Y01 doub 464 n n CAY CAM Y01 sing 465 n n CAM CAL Y01 sing 466 n n CAL CAX Y01 sing 467 n n CAX OAH Y01 sing 468 n n CAX OAF Y01 doub 469 n n CAA HAA1 Y01 sing 470 n n CAA HAA2 Y01 sing 471 n n CAA HAA3 Y01 sing 472 n n CBA HBA Y01 sing 473 n n CAB HAB1 Y01 sing 474 n n CAB HAB2 Y01 sing 475 n n CAB HAB3 Y01 sing 476 n n CAN HAN1 Y01 sing 477 n n CAN HAN2 Y01 sing 478 n n CAJ HAJ1 Y01 sing 479 n n CAJ HAJ2 Y01 sing 480 n n CAO HAO1 Y01 sing 481 n n CAO HAO2 Y01 sing 482 n n CBB HBB Y01 sing 483 n n CAC HAC1 Y01 sing 484 n n CAC HAC2 Y01 sing 485 n n CAC HAC3 Y01 sing 486 n n CBE HBE Y01 sing 487 n n CAP HAP1 Y01 sing 488 n n CAP HAP2 Y01 sing 489 n n CAQ HAQ1 Y01 sing 490 n n CAQ HAQ2 Y01 sing 491 n n CBG HBG Y01 sing 492 n n CBD HBD Y01 sing 493 n n CAE HAE1 Y01 sing 494 n n CAE HAE2 Y01 sing 495 n n CAE HAE3 Y01 sing 496 n n CAU HAU1 Y01 sing 497 n n CAU HAU2 Y01 sing 498 n n CAS HAS1 Y01 sing 499 n n CAS HAS2 Y01 sing 500 n n CBF HBF Y01 sing 501 n n CAK HAK1 Y01 sing 502 n n CAK HAK2 Y01 sing 503 n n CAI HAI Y01 sing 504 n n CAV HAV1 Y01 sing 505 n n CAV HAV2 Y01 sing 506 n n CBC HBC Y01 sing 507 n n CAD HAD1 Y01 sing 508 n n CAD HAD2 Y01 sing 509 n n CAD HAD3 Y01 sing 510 n n CAT HAT1 Y01 sing 511 n n CAT HAT2 Y01 sing 512 n n CAR HAR1 Y01 sing 513 n n CAR HAR2 Y01 sing 514 n n CAM HAM1 Y01 sing 515 n n CAM HAM2 Y01 sing 516 n n CAL HAL1 Y01 sing 517 n n CAL HAL2 Y01 sing 518 n n OAH HAH Y01 sing 519 n n # _atom_sites.entry_id 6K7N _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ALF A 1 1301 1301 ALF ALF . E 5 Y01 A 1 1302 501 Y01 Y01 . F 6 MG A 1 1303 1 MG MG . G 7 NAG C 1 401 404 NAG NAG . H 7 NAG C 1 402 405 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 5 102.94 90.125 97.676 1 42.06 ? CAA Y01 1302 A 1 HETATM 2 C CBA Y01 . . . E 5 102.506 88.792 98.255 1 42.06 ? CBA Y01 1302 A 1 HETATM 3 C CAB Y01 . . . E 5 101.426 88.982 99.304 1 42.06 ? CAB Y01 1302 A 1 HETATM 4 C CAN Y01 . . . E 5 103.692 88.03 98.804 1 42.06 ? CAN Y01 1302 A 1 HETATM 5 C CAJ Y01 . . . E 5 104.691 87.594 97.774 1 42.06 ? CAJ Y01 1302 A 1 HETATM 6 C CAO Y01 . . . E 5 104.067 86.756 96.704 1 42.06 ? CAO Y01 1302 A 1 HETATM 7 C CBB Y01 . . . E 5 105.027 86.244 95.624 1 42.06 ? CBB Y01 1302 A 1 HETATM 8 C CAC Y01 . . . E 5 105.791 85.034 96.151 1 42.06 ? CAC Y01 1302 A 1 HETATM 9 C CBE Y01 . . . E 5 104.272 85.972 94.309 1 42.06 ? CBE Y01 1302 A 1 HETATM 10 C CAP Y01 . . . E 5 103.094 86.965 94.089 1 42.06 ? CAP Y01 1302 A 1 HETATM 11 C CAQ Y01 . . . E 5 103.208 87.476 92.648 1 42.06 ? CAQ Y01 1302 A 1 HETATM 12 C CBG Y01 . . . E 5 103.902 86.301 91.981 1 42.06 ? CBG Y01 1302 A 1 HETATM 13 C CBI Y01 . . . E 5 105.052 85.984 92.957 1 42.06 ? CBI Y01 1302 A 1 HETATM 14 C CAE Y01 . . . E 5 106.115 87.094 92.989 1 42.06 ? CAE Y01 1302 A 1 HETATM 15 C CAU Y01 . . . E 5 105.661 84.662 92.482 1 42.06 ? CAU Y01 1302 A 1 HETATM 16 C CAS Y01 . . . E 5 106.138 84.745 91.026 1 42.06 ? CAS Y01 1302 A 1 HETATM 17 C CBF Y01 . . . E 5 105.023 85.15 90.05 1 42.06 ? CBF Y01 1302 A 1 HETATM 18 C CBD Y01 . . . E 5 104.304 86.425 90.522 1 42.06 ? CBD Y01 1302 A 1 HETATM 19 C CAK Y01 . . . E 5 103.072 86.668 89.663 1 42.06 ? CAK Y01 1302 A 1 HETATM 20 C CAI Y01 . . . E 5 103.365 86.514 88.209 1 42.06 ? CAI Y01 1302 A 1 HETATM 21 C CAZ Y01 . . . E 5 104.469 85.973 87.72 1 42.06 ? CAZ Y01 1302 A 1 HETATM 22 C CAV Y01 . . . E 5 104.715 85.955 86.229 1 42.06 ? CAV Y01 1302 A 1 HETATM 23 C CBH Y01 . . . E 5 105.523 85.285 88.583 1 42.06 ? CBH Y01 1302 A 1 HETATM 24 C CAD Y01 . . . E 5 106.815 86.116 88.505 1 42.06 ? CAD Y01 1302 A 1 HETATM 25 C CAT Y01 . . . E 5 105.766 83.881 87.987 1 42.06 ? CAT Y01 1302 A 1 HETATM 26 C CAR Y01 . . . E 5 106.016 83.895 86.477 1 42.06 ? CAR Y01 1302 A 1 HETATM 27 C CBC Y01 . . . E 5 104.875 84.541 85.738 1 42.06 ? CBC Y01 1302 A 1 HETATM 28 O OAW Y01 . . . E 5 105.161 84.619 84.312 1 42.06 ? OAW Y01 1302 A 1 HETATM 29 C CAY Y01 . . . E 5 104.908 83.566 83.547 1 42.06 ? CAY Y01 1302 A 1 HETATM 30 O OAG Y01 . . . E 5 104.502 82.521 83.962 1 42.06 ? OAG Y01 1302 A 1 HETATM 31 C CAM Y01 . . . E 5 105.154 83.853 82.096 1 42.06 ? CAM Y01 1302 A 1 HETATM 32 C CAL Y01 . . . E 5 103.998 83.484 81.198 1 42.06 ? CAL Y01 1302 A 1 HETATM 33 C CAX Y01 . . . E 5 104.304 83.521 79.712 1 42.06 ? CAX Y01 1302 A 1 HETATM 34 O OAH Y01 . . . E 5 103.423 83.131 78.921 1 42.06 ? OAH Y01 1302 A 1 HETATM 35 O OAF Y01 . . . E 5 105.422 83.934 79.352 1 42.06 ? OAF Y01 1302 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #