data_6K7Y
#
_model_server_result.job_id            icUBOareQJNaKvQU-dOZDA 
_model_server_result.datetime_utc      '2024-12-26 23:08:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k7y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":403}' 
#
_entry.id    6K7Y 
#
_exptl.entry_id    6K7Y 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              767.132 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K7Y 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K7Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 W N N 
? 7 X N N 
? 7 Z N N 
? 7 AA N N 
? 7 CA N N 
? 7 DA N N 
? 7 EA N N 
? 7 FA N N 
? 7 JA N N 
? 7 KA N N 
? 7 MA N N 
? 7 NA N N 
? 7 PA N N 
? 7 QA N N 
? 7 RA N N 
? 7 TA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 192 A GLU 264 1_555 U CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc2 A OE2 GLU 192 A GLU 264 1_555 U CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc3 U CA CA . A CA 401 1_555 B OE1 GLU 192 B GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc4 U CA CA . A CA 401 1_555 B OE2 GLU 192 B GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc5 U CA CA . A CA 401 1_555 C OE1 GLU 192 C GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? 
metalc ? metalc6 U CA CA . A CA 401 1_555 C OE2 GLU 192 C GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc7 U CA CA . A CA 401 1_555 D OE1 GLU 192 D GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc8 U CA CA . A CA 401 1_555 D OE2 GLU 192 D GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc9 K OE1 GLU 192 N GLU 264 1_555 HA CA CA . N CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc10 K OE2 GLU 192 N GLU 264 1_555 HA CA CA . N CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc11 HA CA CA . N CA 401 1_555 L OE1 GLU 192 O GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc12 HA CA CA . N CA 401 1_555 L OE2 GLU 192 O GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc13 HA CA CA . N CA 401 1_555 M OE1 GLU 192 P GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc14 HA CA CA . N CA 401 1_555 M OE2 GLU 192 P GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc15 HA CA CA . N CA 401 1_555 N OE1 GLU 192 Q GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? 
metalc ? metalc16 HA CA CA . N CA 401 1_555 N OE2 GLU 192 Q GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
#
_chem_comp.formula           'C42 H89 N O8 P 1' 
_chem_comp.formula_weight    767.132 
_chem_comp.id                PLX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C22 PLX sing 513 n n 
C23 H231 PLX sing 514 n n 
C23 H232 PLX sing 515 n n 
C23 H233 PLX sing 516 n n 
C22 C21 PLX sing 517 n n 
C22 H221 PLX sing 518 n n 
C22 H222 PLX sing 519 n n 
C21 C20 PLX sing 520 n n 
C21 H211 PLX sing 521 n n 
C21 H212 PLX sing 522 n n 
C20 C19 PLX sing 523 n n 
C20 H201 PLX sing 524 n n 
C20 H202 PLX sing 525 n n 
C19 C18 PLX sing 526 n n 
C19 H191 PLX sing 527 n n 
C19 H192 PLX sing 528 n n 
C18 C17 PLX sing 529 n n 
C18 H181 PLX sing 530 n n 
C18 H182 PLX sing 531 n n 
C17 C16 PLX sing 532 n n 
C17 H171 PLX sing 533 n n 
C17 H172 PLX sing 534 n n 
C16 C15 PLX sing 535 n n 
C16 H161 PLX sing 536 n n 
C16 H162 PLX sing 537 n n 
C15 C14 PLX sing 538 n n 
C15 H151 PLX sing 539 n n 
C15 H152 PLX sing 540 n n 
C14 C13 PLX sing 541 n n 
C14 H141 PLX sing 542 n n 
C14 H142 PLX sing 543 n n 
C13 C12 PLX sing 544 n n 
C13 H131 PLX sing 545 n n 
C13 H132 PLX sing 546 n n 
C12 C11 PLX sing 547 n n 
C12 H121 PLX sing 548 n n 
C12 H122 PLX sing 549 n n 
C11 C10 PLX sing 550 n n 
C11 H111 PLX sing 551 n n 
C11 H112 PLX sing 552 n n 
C10 C9 PLX sing 553 n n 
C10 H101 PLX sing 554 n n 
C10 H102 PLX sing 555 n n 
C9 C8 PLX sing 556 n n 
C9 H91 PLX sing 557 n n 
C9 H92 PLX sing 558 n n 
C8 C7 PLX sing 559 n n 
C8 H81 PLX sing 560 n n 
C8 H82 PLX sing 561 n n 
C7 C6 PLX sing 562 n n 
C7 H71 PLX sing 563 n n 
C7 H72 PLX sing 564 n n 
C6 O7 PLX sing 565 n n 
C6 O6 PLX sing 566 n n 
C6 H6 PLX sing 567 n n 
O7 HO7 PLX sing 568 n n 
O6 C4 PLX sing 569 n n 
C4 C3 PLX sing 570 n n 
C4 C5 PLX sing 571 n n 
C4 H4 PLX sing 572 n n 
C3 O4 PLX sing 573 n n 
C3 H31 PLX sing 574 n n 
C3 H32 PLX sing 575 n n 
O4 P1 PLX sing 576 n n 
P1 O1 PLX sing 577 n n 
P1 O2 PLX doub 578 n n 
P1 O3 PLX sing 579 n n 
O1 C2 PLX sing 580 n n 
C2 C1 PLX sing 581 n n 
C2 H21 PLX sing 582 n n 
C2 H22 PLX sing 583 n n 
C1 N1 PLX sing 584 n n 
C1 H11 PLX sing 585 n n 
C1 H12 PLX sing 586 n n 
N1 C1C PLX sing 587 n n 
N1 C1B PLX sing 588 n n 
N1 C1A PLX sing 589 n n 
C1C H1C1 PLX sing 590 n n 
C1C H1C2 PLX sing 591 n n 
C1C H1C3 PLX sing 592 n n 
C1B H1B1 PLX sing 593 n n 
C1B H1B2 PLX sing 594 n n 
C1B H1B3 PLX sing 595 n n 
C1A H1A1 PLX sing 596 n n 
C1A H1A2 PLX sing 597 n n 
C1A H1A3 PLX sing 598 n n 
C5 O8 PLX sing 599 n n 
C5 H51 PLX sing 600 n n 
C5 H52 PLX sing 601 n n 
O8 C24 PLX sing 602 n n 
C24 O9 PLX sing 603 n n 
C24 C25 PLX sing 604 n n 
C24 H24 PLX sing 605 n n 
O9 HO9 PLX sing 606 n n 
C25 C26 PLX sing 607 n n 
C25 H251 PLX sing 608 n n 
C25 H252 PLX sing 609 n n 
C26 C27 PLX sing 610 n n 
C26 H261 PLX sing 611 n n 
C26 H262 PLX sing 612 n n 
C27 C28 PLX sing 613 n n 
C27 H271 PLX sing 614 n n 
C27 H272 PLX sing 615 n n 
C28 C29 PLX sing 616 n n 
C28 H281 PLX sing 617 n n 
C28 H282 PLX sing 618 n n 
C29 C30 PLX sing 619 n n 
C29 H291 PLX sing 620 n n 
C29 H292 PLX sing 621 n n 
C30 C31 PLX sing 622 n n 
C30 H301 PLX sing 623 n n 
C30 H302 PLX sing 624 n n 
C31 C32 PLX sing 625 n n 
C31 H311 PLX sing 626 n n 
C31 H312 PLX sing 627 n n 
C32 C33 PLX sing 628 n n 
C32 H321 PLX sing 629 n n 
C32 H322 PLX sing 630 n n 
C33 C34 PLX sing 631 n n 
C33 H331 PLX sing 632 n n 
C33 H332 PLX sing 633 n n 
C34 C35 PLX sing 634 n n 
C34 H341 PLX sing 635 n n 
C34 H342 PLX sing 636 n n 
C35 C36 PLX sing 637 n n 
C35 H351 PLX sing 638 n n 
C35 H352 PLX sing 639 n n 
C36 C37 PLX sing 640 n n 
C36 H361 PLX sing 641 n n 
C36 H362 PLX sing 642 n n 
C37 C38 PLX sing 643 n n 
C37 H371 PLX sing 644 n n 
C37 H372 PLX sing 645 n n 
C38 C39 PLX sing 646 n n 
C38 H381 PLX sing 647 n n 
C38 H382 PLX sing 648 n n 
C39 H391 PLX sing 649 n n 
C39 H392 PLX sing 650 n n 
C39 H393 PLX sing 651 n n 
O3 HO3 PLX sing 652 n n 
#
_atom_sites.entry_id                     6K7Y 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 5 CA A 1 401 401 CA CA . 
V 6 CDL A 1 402 402 CDL CDL . 
W 7 PLX A 1 403 403 PLX PLX . 
X 7 PLX A 1 404 404 PLX PLX . 
Y 6 CDL B 1 401 401 CDL CDL . 
Z 7 PLX B 1 402 402 PLX PLX . 
AA 7 PLX B 1 403 403 PLX PLX . 
BA 6 CDL C 1 401 401 CDL CDL . 
CA 7 PLX C 1 402 402 PLX PLX . 
DA 7 PLX C 1 403 403 PLX PLX . 
EA 7 PLX C 1 404 404 PLX PLX . 
FA 7 PLX D 1 401 401 PLX PLX . 
GA 6 CDL H 1 201 201 CDL CDL . 
HA 5 CA N 1 401 401 CA CA . 
IA 6 CDL N 1 402 402 CDL CDL . 
JA 7 PLX N 1 403 403 PLX PLX . 
KA 7 PLX N 1 404 404 PLX PLX . 
LA 6 CDL O 1 401 401 CDL CDL . 
MA 7 PLX O 1 402 402 PLX PLX . 
NA 7 PLX O 1 403 403 PLX PLX . 
OA 6 CDL P 1 401 401 CDL CDL . 
PA 7 PLX P 1 402 402 PLX PLX . 
QA 7 PLX P 1 403 403 PLX PLX . 
RA 7 PLX P 1 404 404 PLX PLX . 
SA 6 CDL Q 1 401 401 CDL CDL . 
TA 7 PLX Q 1 402 402 PLX PLX . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C23 PLX . . . DA 7 146.93 191.313 214.933 1 52.17 ? C23 PLX 403 C 1 
HETATM 2 C C22 PLX . . . DA 7 147.163 192.752 214.533 1 52.17 ? C22 PLX 403 C 1 
HETATM 3 C C21 PLX . . . DA 7 147.241 193.619 215.781 1 52.17 ? C21 PLX 403 C 1 
HETATM 4 C C20 PLX . . . DA 7 145.839 194.123 216.153 1 52.17 ? C20 PLX 403 C 1 
HETATM 5 C C19 PLX . . . DA 7 145.914 194.978 217.424 1 52.17 ? C19 PLX 403 C 1 
HETATM 6 C C18 PLX . . . DA 7 146.059 194.051 218.646 1 52.17 ? C18 PLX 403 C 1 
HETATM 7 C C17 PLX . . . DA 7 146.226 194.911 219.924 1 52.17 ? C17 PLX 403 C 1 
HETATM 8 C C16 PLX . . . DA 7 144.85 195.386 220.426 1 52.17 ? C16 PLX 403 C 1 
HETATM 9 C C15 PLX . . . DA 7 144.192 194.232 221.199 1 52.17 ? C15 PLX 403 C 1 
HETATM 10 C C14 PLX . . . DA 7 144.657 194.271 222.652 1 52.17 ? C14 PLX 403 C 1 
HETATM 11 C C13 PLX . . . DA 7 143.463 194.153 223.577 1 52.17 ? C13 PLX 403 C 1 
HETATM 12 C C12 PLX . . . DA 7 143.633 195.116 224.745 1 52.17 ? C12 PLX 403 C 1 
HETATM 13 C C11 PLX . . . DA 7 144.098 194.334 225.955 1 52.17 ? C11 PLX 403 C 1 
HETATM 14 C C10 PLX . . . DA 7 144.351 195.29 227.107 1 52.17 ? C10 PLX 403 C 1 
HETATM 15 C C9 PLX . . . DA 7 143.656 194.757 228.367 1 52.17 ? C9 PLX 403 C 1 
HETATM 16 C C8 PLX . . . DA 7 142.884 195.913 229.052 1 52.17 ? C8 PLX 403 C 1 
HETATM 17 C C7 PLX . . . DA 7 142.964 195.75 230.586 1 52.17 ? C7 PLX 403 C 1 
HETATM 18 C C6 PLX . . . DA 7 143.04 197.157 231.24 1 52.17 ? C6 PLX 403 C 1 
HETATM 19 O O7 PLX . . . DA 7 143.024 198.119 230.252 1 52.17 ? O7 PLX 403 C 1 
HETATM 20 O O6 PLX . . . DA 7 141.924 197.342 232.077 1 52.17 ? O6 PLX 403 C 1 
HETATM 21 C C4 PLX . . . DA 7 142.236 197.317 233.443 1 52.17 ? C4 PLX 403 C 1 
HETATM 22 C C3 PLX . . . DA 7 141.923 198.68 234.057 1 52.17 ? C3 PLX 403 C 1 
HETATM 23 O O4 PLX . . . DA 7 142.008 198.577 235.462 1 52.17 ? O4 PLX 403 C 1 
HETATM 24 P P1 PLX . . . DA 7 142.243 199.966 236.349 1 52.17 ? P1 PLX 403 C 1 
HETATM 25 O O1 PLX . . . DA 7 143.596 200.79 235.812 1 52.17 ? O1 PLX 403 C 1 
HETATM 26 C C2 PLX . . . DA 7 144.853 200.178 235.939 1 52.17 ? C2 PLX 403 C 1 
HETATM 27 C C1 PLX . . . DA 7 145.43 199.879 234.536 1 52.17 ? C1 PLX 403 C 1 
HETATM 28 N N1 PLX . . . DA 7 146.535 198.929 234.628 1 52.17 ? N1 PLX 403 C 1 
HETATM 29 C C1C PLX . . . DA 7 146.116 197.74 235.331 1 52.17 ? C1C PLX 403 C 1 
HETATM 30 C C1B PLX . . . DA 7 147.636 199.536 235.327 1 52.17 ? C1B PLX 403 C 1 
HETATM 31 C C1A PLX . . . DA 7 146.955 198.562 233.292 1 52.17 ? C1A PLX 403 C 1 
HETATM 32 O O2 PLX . . . DA 7 141.06 200.808 236.32 1 52.17 ? O2 PLX 403 C 1 
HETATM 33 C C5 PLX . . . DA 7 141.389 196.253 234.133 1 52.17 ? C5 PLX 403 C 1 
HETATM 34 O O3 PLX . . . DA 7 142.341 199.667 237.77 1 52.17 ? O3 PLX 403 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    237 
_model_server_stats.query_time_ms           372 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#