data_6K7Y # _model_server_result.job_id fzUDMfQpGQKAvDyIZdki8A _model_server_result.datetime_utc '2024-12-26 22:42:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k7y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":404}' # _entry.id 6K7Y # _exptl.entry_id 6K7Y _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 767.132 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6K7Y _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K7Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 W N N ? 7 X N N ? 7 Z N N ? 7 AA N N ? 7 CA N N ? 7 DA N N ? 7 EA N N ? 7 FA N N ? 7 JA N N ? 7 KA N N ? 7 MA N N ? 7 NA N N ? 7 PA N N ? 7 QA N N ? 7 RA N N ? 7 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 192 A GLU 264 1_555 U CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc2 A OE2 GLU 192 A GLU 264 1_555 U CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 U CA CA . A CA 401 1_555 B OE1 GLU 192 B GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc4 U CA CA . A CA 401 1_555 B OE2 GLU 192 B GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc5 U CA CA . A CA 401 1_555 C OE1 GLU 192 C GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc6 U CA CA . A CA 401 1_555 C OE2 GLU 192 C GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc7 U CA CA . A CA 401 1_555 D OE1 GLU 192 D GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc8 U CA CA . A CA 401 1_555 D OE2 GLU 192 D GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc9 K OE1 GLU 192 N GLU 264 1_555 HA CA CA . N CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc10 K OE2 GLU 192 N GLU 264 1_555 HA CA CA . N CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc11 HA CA CA . N CA 401 1_555 L OE1 GLU 192 O GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc12 HA CA CA . N CA 401 1_555 L OE2 GLU 192 O GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc13 HA CA CA . N CA 401 1_555 M OE1 GLU 192 P GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc14 HA CA CA . N CA 401 1_555 M OE2 GLU 192 P GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc15 HA CA CA . N CA 401 1_555 N OE1 GLU 192 Q GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc16 HA CA CA . N CA 401 1_555 N OE2 GLU 192 Q GLU 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? # _chem_comp.formula 'C42 H89 N O8 P 1' _chem_comp.formula_weight 767.132 _chem_comp.id PLX _chem_comp.mon_nstd_flag . _chem_comp.name (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 PLX sing 513 n n C23 H231 PLX sing 514 n n C23 H232 PLX sing 515 n n C23 H233 PLX sing 516 n n C22 C21 PLX sing 517 n n C22 H221 PLX sing 518 n n C22 H222 PLX sing 519 n n C21 C20 PLX sing 520 n n C21 H211 PLX sing 521 n n C21 H212 PLX sing 522 n n C20 C19 PLX sing 523 n n C20 H201 PLX sing 524 n n C20 H202 PLX sing 525 n n C19 C18 PLX sing 526 n n C19 H191 PLX sing 527 n n C19 H192 PLX sing 528 n n C18 C17 PLX sing 529 n n C18 H181 PLX sing 530 n n C18 H182 PLX sing 531 n n C17 C16 PLX sing 532 n n C17 H171 PLX sing 533 n n C17 H172 PLX sing 534 n n C16 C15 PLX sing 535 n n C16 H161 PLX sing 536 n n C16 H162 PLX sing 537 n n C15 C14 PLX sing 538 n n C15 H151 PLX sing 539 n n C15 H152 PLX sing 540 n n C14 C13 PLX sing 541 n n C14 H141 PLX sing 542 n n C14 H142 PLX sing 543 n n C13 C12 PLX sing 544 n n C13 H131 PLX sing 545 n n C13 H132 PLX sing 546 n n C12 C11 PLX sing 547 n n C12 H121 PLX sing 548 n n C12 H122 PLX sing 549 n n C11 C10 PLX sing 550 n n C11 H111 PLX sing 551 n n C11 H112 PLX sing 552 n n C10 C9 PLX sing 553 n n C10 H101 PLX sing 554 n n C10 H102 PLX sing 555 n n C9 C8 PLX sing 556 n n C9 H91 PLX sing 557 n n C9 H92 PLX sing 558 n n C8 C7 PLX sing 559 n n C8 H81 PLX sing 560 n n C8 H82 PLX sing 561 n n C7 C6 PLX sing 562 n n C7 H71 PLX sing 563 n n C7 H72 PLX sing 564 n n C6 O7 PLX sing 565 n n C6 O6 PLX sing 566 n n C6 H6 PLX sing 567 n n O7 HO7 PLX sing 568 n n O6 C4 PLX sing 569 n n C4 C3 PLX sing 570 n n C4 C5 PLX sing 571 n n C4 H4 PLX sing 572 n n C3 O4 PLX sing 573 n n C3 H31 PLX sing 574 n n C3 H32 PLX sing 575 n n O4 P1 PLX sing 576 n n P1 O1 PLX sing 577 n n P1 O2 PLX doub 578 n n P1 O3 PLX sing 579 n n O1 C2 PLX sing 580 n n C2 C1 PLX sing 581 n n C2 H21 PLX sing 582 n n C2 H22 PLX sing 583 n n C1 N1 PLX sing 584 n n C1 H11 PLX sing 585 n n C1 H12 PLX sing 586 n n N1 C1C PLX sing 587 n n N1 C1B PLX sing 588 n n N1 C1A PLX sing 589 n n C1C H1C1 PLX sing 590 n n C1C H1C2 PLX sing 591 n n C1C H1C3 PLX sing 592 n n C1B H1B1 PLX sing 593 n n C1B H1B2 PLX sing 594 n n C1B H1B3 PLX sing 595 n n C1A H1A1 PLX sing 596 n n C1A H1A2 PLX sing 597 n n C1A H1A3 PLX sing 598 n n C5 O8 PLX sing 599 n n C5 H51 PLX sing 600 n n C5 H52 PLX sing 601 n n O8 C24 PLX sing 602 n n C24 O9 PLX sing 603 n n C24 C25 PLX sing 604 n n C24 H24 PLX sing 605 n n O9 HO9 PLX sing 606 n n C25 C26 PLX sing 607 n n C25 H251 PLX sing 608 n n C25 H252 PLX sing 609 n n C26 C27 PLX sing 610 n n C26 H261 PLX sing 611 n n C26 H262 PLX sing 612 n n C27 C28 PLX sing 613 n n C27 H271 PLX sing 614 n n C27 H272 PLX sing 615 n n C28 C29 PLX sing 616 n n C28 H281 PLX sing 617 n n C28 H282 PLX sing 618 n n C29 C30 PLX sing 619 n n C29 H291 PLX sing 620 n n C29 H292 PLX sing 621 n n C30 C31 PLX sing 622 n n C30 H301 PLX sing 623 n n C30 H302 PLX sing 624 n n C31 C32 PLX sing 625 n n C31 H311 PLX sing 626 n n C31 H312 PLX sing 627 n n C32 C33 PLX sing 628 n n C32 H321 PLX sing 629 n n C32 H322 PLX sing 630 n n C33 C34 PLX sing 631 n n C33 H331 PLX sing 632 n n C33 H332 PLX sing 633 n n C34 C35 PLX sing 634 n n C34 H341 PLX sing 635 n n C34 H342 PLX sing 636 n n C35 C36 PLX sing 637 n n C35 H351 PLX sing 638 n n C35 H352 PLX sing 639 n n C36 C37 PLX sing 640 n n C36 H361 PLX sing 641 n n C36 H362 PLX sing 642 n n C37 C38 PLX sing 643 n n C37 H371 PLX sing 644 n n C37 H372 PLX sing 645 n n C38 C39 PLX sing 646 n n C38 H381 PLX sing 647 n n C38 H382 PLX sing 648 n n C39 H391 PLX sing 649 n n C39 H392 PLX sing 650 n n C39 H393 PLX sing 651 n n O3 HO3 PLX sing 652 n n # _atom_sites.entry_id 6K7Y _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 5 CA A 1 401 401 CA CA . V 6 CDL A 1 402 402 CDL CDL . W 7 PLX A 1 403 403 PLX PLX . X 7 PLX A 1 404 404 PLX PLX . Y 6 CDL B 1 401 401 CDL CDL . Z 7 PLX B 1 402 402 PLX PLX . AA 7 PLX B 1 403 403 PLX PLX . BA 6 CDL C 1 401 401 CDL CDL . CA 7 PLX C 1 402 402 PLX PLX . DA 7 PLX C 1 403 403 PLX PLX . EA 7 PLX C 1 404 404 PLX PLX . FA 7 PLX D 1 401 401 PLX PLX . GA 6 CDL H 1 201 201 CDL CDL . HA 5 CA N 1 401 401 CA CA . IA 6 CDL N 1 402 402 CDL CDL . JA 7 PLX N 1 403 403 PLX PLX . KA 7 PLX N 1 404 404 PLX PLX . LA 6 CDL O 1 401 401 CDL CDL . MA 7 PLX O 1 402 402 PLX PLX . NA 7 PLX O 1 403 403 PLX PLX . OA 6 CDL P 1 401 401 CDL CDL . PA 7 PLX P 1 402 402 PLX PLX . QA 7 PLX P 1 403 403 PLX PLX . RA 7 PLX P 1 404 404 PLX PLX . SA 6 CDL Q 1 401 401 CDL CDL . TA 7 PLX Q 1 402 402 PLX PLX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PLX . . . X 7 118.701 182.558 207.949 1 50.73 ? C23 PLX 404 A 1 HETATM 2 C C22 PLX . . . X 7 118.116 181.521 208.881 1 50.73 ? C22 PLX 404 A 1 HETATM 3 C C21 PLX . . . X 7 118.536 181.821 210.311 1 50.73 ? C21 PLX 404 A 1 HETATM 4 C C20 PLX . . . X 7 117.781 180.893 211.276 1 50.73 ? C20 PLX 404 A 1 HETATM 5 C C19 PLX . . . X 7 118.045 181.331 212.723 1 50.73 ? C19 PLX 404 A 1 HETATM 6 C C18 PLX . . . X 7 117.554 180.228 213.683 1 50.73 ? C18 PLX 404 A 1 HETATM 7 C C17 PLX . . . X 7 117.517 180.783 215.127 1 50.73 ? C17 PLX 404 A 1 HETATM 8 C C16 PLX . . . X 7 116.201 180.361 215.812 1 50.73 ? C16 PLX 404 A 1 HETATM 9 C C15 PLX . . . X 7 116.492 179.919 217.255 1 50.73 ? C15 PLX 404 A 1 HETATM 10 C C14 PLX . . . X 7 115.203 179.442 217.92 1 50.73 ? C14 PLX 404 A 1 HETATM 11 C C13 PLX . . . X 7 115.545 178.446 219.01 1 50.73 ? C13 PLX 404 A 1 HETATM 12 C C12 PLX . . . X 7 114.285 178.128 219.804 1 50.73 ? C12 PLX 404 A 1 HETATM 13 C C11 PLX . . . X 7 114.308 176.675 220.216 1 50.73 ? C11 PLX 404 A 1 HETATM 14 C C10 PLX . . . X 7 114.613 176.565 221.697 1 50.73 ? C10 PLX 404 A 1 HETATM 15 C C9 PLX . . . X 7 113.759 175.436 222.289 1 50.73 ? C9 PLX 404 A 1 HETATM 16 C C8 PLX . . . X 7 114.514 174.765 223.469 1 50.73 ? C8 PLX 404 A 1 HETATM 17 C C7 PLX . . . X 7 113.515 174.411 224.597 1 50.73 ? C7 PLX 404 A 1 HETATM 18 C C6 PLX . . . X 7 113.843 172.999 225.165 1 50.73 ? C6 PLX 404 A 1 HETATM 19 O O7 PLX . . . X 7 113.322 172.884 226.439 1 50.73 ? O7 PLX 404 A 1 HETATM 20 O O6 PLX . . . X 7 113.289 172.008 224.326 1 50.73 ? O6 PLX 404 A 1 HETATM 21 C C4 PLX . . . X 7 112.017 171.555 224.716 1 50.73 ? C4 PLX 404 A 1 HETATM 22 C C3 PLX . . . X 7 111.011 171.782 223.583 1 50.73 ? C3 PLX 404 A 1 HETATM 23 O O4 PLX . . . X 7 111.242 170.862 222.536 1 50.73 ? O4 PLX 404 A 1 HETATM 24 P P1 PLX . . . X 7 110.396 171.052 221.11 1 50.73 ? P1 PLX 404 A 1 HETATM 25 O O1 PLX . . . X 7 108.754 171.005 221.414 1 50.73 ? O1 PLX 404 A 1 HETATM 26 C C2 PLX . . . X 7 107.888 171.752 220.6 1 50.73 ? C2 PLX 404 A 1 HETATM 27 C C1 PLX . . . X 7 106.57 172.007 221.37 1 50.73 ? C1 PLX 404 A 1 HETATM 28 N N1 PLX . . . X 7 105.453 172.161 220.444 1 50.73 ? N1 PLX 404 A 1 HETATM 29 C C1C PLX . . . X 7 105.291 170.951 219.676 1 50.73 ? C1C PLX 404 A 1 HETATM 30 C C1B PLX . . . X 7 105.703 173.267 219.56 1 50.73 ? C1B PLX 404 A 1 HETATM 31 C C1A PLX . . . X 7 104.241 172.421 221.194 1 50.73 ? C1A PLX 404 A 1 HETATM 32 O O2 PLX . . . X 7 110.773 172.273 220.418 1 50.73 ? O2 PLX 404 A 1 HETATM 33 C C5 PLX . . . X 7 112.081 170.065 225.046 1 50.73 ? C5 PLX 404 A 1 HETATM 34 O O3 PLX . . . X 7 110.778 170.049 220.127 1 50.73 ? O3 PLX 404 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 34 #