data_6K8W
#
_model_server_result.job_id            bI-UyAzFkjQqHpa9RV77YQ 
_model_server_result.datetime_utc      '2024-10-19 13:45:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6k8w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1301}' 
#
_entry.id    6K8W 
#
_exptl.entry_id    6K8W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6K8W 
_cell.length_a            85.871 
_cell.length_b            109.114 
_cell.length_c            130.907 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6K8W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     6K8W 
_atom_sites.fract_transf_matrix[1][1]    0.011645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009165 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007639 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 1301 601 NAP NAP . 
D 2 NAP B 1 1301 601 NAP NAP . 
E 3 SO4 B 1 1302 1 SO4 SO4 . 
F 4 HOH A 1 1401 5 HOH HOH . 
F 4 HOH A 2 1402 7 HOH HOH . 
F 4 HOH A 3 1403 1 HOH HOH . 
F 4 HOH A 4 1404 3 HOH HOH . 
F 4 HOH A 5 1405 8 HOH HOH . 
F 4 HOH A 6 1406 13 HOH HOH . 
F 4 HOH A 7 1407 20 HOH HOH . 
F 4 HOH A 8 1408 12 HOH HOH . 
F 4 HOH A 9 1409 11 HOH HOH . 
F 4 HOH A 10 1410 24 HOH HOH . 
G 4 HOH B 1 1401 4 HOH HOH . 
G 4 HOH B 2 1402 2 HOH HOH . 
G 4 HOH B 3 1403 9 HOH HOH . 
G 4 HOH B 4 1404 6 HOH HOH . 
G 4 HOH B 5 1405 23 HOH HOH . 
G 4 HOH B 6 1406 25 HOH HOH . 
G 4 HOH B 7 1407 10 HOH HOH . 
G 4 HOH B 8 1408 14 HOH HOH . 
G 4 HOH B 9 1409 19 HOH HOH . 
G 4 HOH B 10 1410 21 HOH HOH . 
G 4 HOH B 11 1411 17 HOH HOH . 
G 4 HOH B 12 1412 15 HOH HOH . 
G 4 HOH B 13 1413 22 HOH HOH . 
G 4 HOH B 14 1414 16 HOH HOH . 
G 4 HOH B 15 1415 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 2 9.815 2.149 3.349 1 78.54 ? PA NAP 1301 B 1 
HETATM 2 O O1A NAP . . . D 2 8.646 3.08 3.05 1 77.41 ? O1A NAP 1301 B 1 
HETATM 3 O O2A NAP . . . D 2 10.175 0.984 2.446 1 77.29 ? O2A NAP 1301 B 1 
HETATM 4 O O5B NAP . . . D 2 11.156 3.035 3.487 1 75.39 ? O5B NAP 1301 B 1 
HETATM 5 C C5B NAP . . . D 2 11.956 3.312 2.339 1 76.57 ? C5B NAP 1301 B 1 
HETATM 6 C C4B NAP . . . D 2 11.153 4.125 1.314 1 74.57 ? C4B NAP 1301 B 1 
HETATM 7 O O4B NAP . . . D 2 11.053 5.509 1.682 1 71.21 ? O4B NAP 1301 B 1 
HETATM 8 C C3B NAP . . . D 2 11.778 4.042 -0.071 1 71.82 ? C3B NAP 1301 B 1 
HETATM 9 O O3B NAP . . . D 2 10.886 3.305 -0.917 1 73.13 ? O3B NAP 1301 B 1 
HETATM 10 C C2B NAP . . . D 2 12.004 5.471 -0.529 1 68.49 ? C2B NAP 1301 B 1 
HETATM 11 O O2B NAP . . . D 2 11.366 5.726 -1.779 1 68.65 ? O2B NAP 1301 B 1 
HETATM 12 C C1B NAP . . . D 2 11.438 6.342 0.586 1 69.45 ? C1B NAP 1301 B 1 
HETATM 13 N N9A NAP . . . D 2 12.462 7.298 1.032 1 70.2 ? N9A NAP 1301 B 1 
HETATM 14 C C8A NAP . . . D 2 13.348 7.124 2.031 1 67.62 ? C8A NAP 1301 B 1 
HETATM 15 N N7A NAP . . . D 2 14.156 8.205 2.162 1 65.91 ? N7A NAP 1301 B 1 
HETATM 16 C C5A NAP . . . D 2 13.771 9.085 1.217 1 67.7 ? C5A NAP 1301 B 1 
HETATM 17 C C6A NAP . . . D 2 14.196 10.425 0.785 1 63.52 ? C6A NAP 1301 B 1 
HETATM 18 N N6A NAP . . . D 2 15.21 11.005 1.442 1 58.75 ? N6A NAP 1301 B 1 
HETATM 19 N N1A NAP . . . D 2 13.538 11.013 -0.251 1 66.71 ? N1A NAP 1301 B 1 
HETATM 20 C C2A NAP . . . D 2 12.509 10.407 -0.896 1 69.3 ? C2A NAP 1301 B 1 
HETATM 21 N N3A NAP . . . D 2 12.067 9.172 -0.565 1 71.16 ? N3A NAP 1301 B 1 
HETATM 22 C C4A NAP . . . D 2 12.652 8.485 0.465 1 72.38 ? C4A NAP 1301 B 1 
HETATM 23 O O3 NAP . . . D 2 9.571 1.553 4.821 1 72.11 ? O3 NAP 1301 B 1 
HETATM 24 P PN NAP . . . D 2 8.087 1.408 5.411 1 67.76 ? PN NAP 1301 B 1 
HETATM 25 O O1N NAP . . . D 2 7.153 1.173 4.246 1 68.56 ? O1N NAP 1301 B 1 
HETATM 26 O O2N NAP . . . D 2 8.174 0.424 6.566 1 63.68 ? O2N NAP 1301 B 1 
HETATM 27 O O5D NAP . . . D 2 7.734 2.886 5.942 1 66.35 ? O5D NAP 1301 B 1 
HETATM 28 C C5D NAP . . . D 2 8.744 3.874 6.117 1 67.72 ? C5D NAP 1301 B 1 
HETATM 29 C C4D NAP . . . D 2 8.326 4.864 7.185 1 68.06 ? C4D NAP 1301 B 1 
HETATM 30 O O4D NAP . . . D 2 7.68 4.151 8.243 1 67.98 ? O4D NAP 1301 B 1 
HETATM 31 C C3D NAP . . . D 2 9.543 5.578 7.755 1 71.3 ? C3D NAP 1301 B 1 
HETATM 32 O O3D NAP . . . D 2 9.318 6.996 7.823 1 73.13 ? O3D NAP 1301 B 1 
HETATM 33 C C2D NAP . . . D 2 9.728 4.906 9.115 1 74.51 ? C2D NAP 1301 B 1 
HETATM 34 O O2D NAP . . . D 2 10.267 5.755 10.139 1 75.63 ? O2D NAP 1301 B 1 
HETATM 35 C C1D NAP . . . D 2 8.334 4.405 9.494 1 73.18 ? C1D NAP 1301 B 1 
HETATM 36 N N1N NAP . . . D 2 8.393 3.218 10.377 1 74.81 ? N1N NAP 1301 B 1 
HETATM 37 C C2N NAP . . . D 2 8.719 2.007 9.867 1 77.37 ? C2N NAP 1301 B 1 
HETATM 38 C C3N NAP . . . D 2 8.792 0.864 10.677 1 72.78 ? C3N NAP 1301 B 1 
HETATM 39 C C7N NAP . . . D 2 9.158 -0.466 10.088 1 68.99 ? C7N NAP 1301 B 1 
HETATM 40 O O7N NAP . . . D 2 9.919 -1.185 10.717 1 69.89 ? O7N NAP 1301 B 1 
HETATM 41 N N7N NAP . . . D 2 8.649 -0.823 8.903 1 67.25 ? N7N NAP 1301 B 1 
HETATM 42 C C4N NAP . . . D 2 8.527 0.982 12.037 1 72.65 ? C4N NAP 1301 B 1 
HETATM 43 C C5N NAP . . . D 2 8.189 2.234 12.545 1 73.57 ? C5N NAP 1301 B 1 
HETATM 44 C C6N NAP . . . D 2 8.129 3.342 11.693 1 72.94 ? C6N NAP 1301 B 1 
HETATM 45 P P2B NAP . . . D 2 12.206 5.702 -3.159 1 70.28 ? P2B NAP 1301 B 1 
HETATM 46 O O1X NAP . . . D 2 11.2 5.59 -4.287 1 67.57 ? O1X NAP 1301 B 1 
HETATM 47 O O2X NAP . . . D 2 12.87 7.047 -3.036 1 72.79 ? O2X NAP 1301 B 1 
HETATM 48 O O3X NAP . . . D 2 13.155 4.527 -3.089 1 63.89 ? O3X NAP 1301 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           48 
#