data_6K8Z # _model_server_result.job_id BcS6qvWCpNqM5_LdVT-PzA _model_server_result.datetime_utc '2024-11-08 05:58:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6k8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 6K8Z # _exptl.entry_id 6K8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.93 _cell.angle_gamma 90 _cell.entry_id 6K8Z _cell.length_a 54.63 _cell.length_b 71.08 _cell.length_c 77.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6K8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 144 A ASP 124 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc2 A OD2 ASP 144 A ASP 124 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 C O1B ADP . A ADP 401 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc4 C O2B ADP . A ADP 401 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc5 C O2A ADP . A ADP 401 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc6 B OD1 ASP 144 B ASP 124 1_555 J CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc7 B OD2 ASP 144 B ASP 124 1_555 J CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc8 B O THR 163 B THR 143 1_555 L CA CA . B CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc9 B O GLY 200 B GLY 180 1_555 L CA CA . B CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc10 B O SER 263 B SER 243 1_555 K CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc11 B OD1 ASP 264 B ASP 244 1_555 K CA CA . B CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc12 H O2B ADP . B ADP 401 1_555 I CA CA . B CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc13 H O1B ADP . B ADP 401 1_555 J CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc14 H O1A ADP . B ADP 401 1_555 J CA CA . B CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6K8Z _atom_sites.fract_transf_matrix[1][1] 0.018305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002876 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014069 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 401 2 ADP ADP . D 3 CA A 1 402 1 CA CA . E 3 CA A 1 403 2 CA CA . F 4 ACT A 1 404 2 ACT ACT . G 5 CL A 1 405 1 CL CL . H 2 ADP B 1 401 3 ADP ADP . I 3 CA B 1 402 3 CA CA . J 3 CA B 1 403 4 CA CA . K 3 CA B 1 404 5 CA CA . L 3 CA B 1 405 6 CA CA . M 4 ACT B 1 406 1 ACT ACT . N 6 HOH A 1 501 307 HOH HOH . N 6 HOH A 2 502 233 HOH HOH . N 6 HOH A 3 503 51 HOH HOH . N 6 HOH A 4 504 40 HOH HOH . N 6 HOH A 5 505 79 HOH HOH . N 6 HOH A 6 506 129 HOH HOH . N 6 HOH A 7 507 100 HOH HOH . N 6 HOH A 8 508 87 HOH HOH . N 6 HOH A 9 509 223 HOH HOH . N 6 HOH A 10 510 171 HOH HOH . N 6 HOH A 11 511 330 HOH HOH . N 6 HOH A 12 512 83 HOH HOH . N 6 HOH A 13 513 159 HOH HOH . N 6 HOH A 14 514 321 HOH HOH . N 6 HOH A 15 515 315 HOH HOH . N 6 HOH A 16 516 190 HOH HOH . N 6 HOH A 17 517 151 HOH HOH . N 6 HOH A 18 518 333 HOH HOH . N 6 HOH A 19 519 314 HOH HOH . N 6 HOH A 20 520 186 HOH HOH . N 6 HOH A 21 521 310 HOH HOH . N 6 HOH A 22 522 62 HOH HOH . N 6 HOH A 23 523 125 HOH HOH . N 6 HOH A 24 524 13 HOH HOH . N 6 HOH A 25 525 14 HOH HOH . N 6 HOH A 26 526 107 HOH HOH . N 6 HOH A 27 527 260 HOH HOH . N 6 HOH A 28 528 30 HOH HOH . N 6 HOH A 29 529 18 HOH HOH . N 6 HOH A 30 530 34 HOH HOH . N 6 HOH A 31 531 328 HOH HOH . N 6 HOH A 32 532 80 HOH HOH . N 6 HOH A 33 533 88 HOH HOH . N 6 HOH A 34 534 217 HOH HOH . N 6 HOH A 35 535 305 HOH HOH . N 6 HOH A 36 536 243 HOH HOH . N 6 HOH A 37 537 306 HOH HOH . N 6 HOH A 38 538 8 HOH HOH . N 6 HOH A 39 539 165 HOH HOH . N 6 HOH A 40 540 317 HOH HOH . N 6 HOH A 41 541 74 HOH HOH . N 6 HOH A 42 542 210 HOH HOH . N 6 HOH A 43 543 97 HOH HOH . N 6 HOH A 44 544 24 HOH HOH . N 6 HOH A 45 545 59 HOH HOH . N 6 HOH A 46 546 109 HOH HOH . N 6 HOH A 47 547 180 HOH HOH . N 6 HOH A 48 548 325 HOH HOH . N 6 HOH A 49 549 111 HOH HOH . N 6 HOH A 50 550 124 HOH HOH . N 6 HOH A 51 551 275 HOH HOH . N 6 HOH A 52 552 3 HOH HOH . N 6 HOH A 53 553 323 HOH HOH . N 6 HOH A 54 554 329 HOH HOH . N 6 HOH A 55 555 319 HOH HOH . N 6 HOH A 56 556 263 HOH HOH . N 6 HOH A 57 557 96 HOH HOH . N 6 HOH A 58 558 23 HOH HOH . N 6 HOH A 59 559 312 HOH HOH . N 6 HOH A 60 560 106 HOH HOH . N 6 HOH A 61 561 204 HOH HOH . N 6 HOH A 62 562 309 HOH HOH . N 6 HOH A 63 563 89 HOH HOH . N 6 HOH A 64 564 144 HOH HOH . N 6 HOH A 65 565 294 HOH HOH . N 6 HOH A 66 566 69 HOH HOH . N 6 HOH A 67 567 257 HOH HOH . N 6 HOH A 68 568 313 HOH HOH . N 6 HOH A 69 569 98 HOH HOH . N 6 HOH A 70 570 234 HOH HOH . N 6 HOH A 71 571 82 HOH HOH . N 6 HOH A 72 572 298 HOH HOH . N 6 HOH A 73 573 58 HOH HOH . N 6 HOH A 74 574 160 HOH HOH . N 6 HOH A 75 575 327 HOH HOH . N 6 HOH A 76 576 201 HOH HOH . N 6 HOH A 77 577 84 HOH HOH . N 6 HOH A 78 578 81 HOH HOH . N 6 HOH A 79 579 316 HOH HOH . N 6 HOH A 80 580 292 HOH HOH . N 6 HOH A 81 581 225 HOH HOH . N 6 HOH A 82 582 320 HOH HOH . N 6 HOH A 83 583 239 HOH HOH . N 6 HOH A 84 584 167 HOH HOH . N 6 HOH A 85 585 77 HOH HOH . O 6 HOH B 1 501 166 HOH HOH . O 6 HOH B 2 502 66 HOH HOH . O 6 HOH B 3 503 95 HOH HOH . O 6 HOH B 4 504 91 HOH HOH . O 6 HOH B 5 505 75 HOH HOH . O 6 HOH B 6 506 242 HOH HOH . O 6 HOH B 7 507 35 HOH HOH . O 6 HOH B 8 508 46 HOH HOH . O 6 HOH B 9 509 94 HOH HOH . O 6 HOH B 10 510 31 HOH HOH . O 6 HOH B 11 511 108 HOH HOH . O 6 HOH B 12 512 161 HOH HOH . O 6 HOH B 13 513 54 HOH HOH . O 6 HOH B 14 514 198 HOH HOH . O 6 HOH B 15 515 136 HOH HOH . O 6 HOH B 16 516 133 HOH HOH . O 6 HOH B 17 517 12 HOH HOH . O 6 HOH B 18 518 7 HOH HOH . O 6 HOH B 19 519 16 HOH HOH . O 6 HOH B 20 520 17 HOH HOH . O 6 HOH B 21 521 28 HOH HOH . O 6 HOH B 22 522 6 HOH HOH . O 6 HOH B 23 523 156 HOH HOH . O 6 HOH B 24 524 200 HOH HOH . O 6 HOH B 25 525 41 HOH HOH . O 6 HOH B 26 526 90 HOH HOH . O 6 HOH B 27 527 61 HOH HOH . O 6 HOH B 28 528 71 HOH HOH . O 6 HOH B 29 529 72 HOH HOH . O 6 HOH B 30 530 48 HOH HOH . O 6 HOH B 31 531 56 HOH HOH . O 6 HOH B 32 532 47 HOH HOH . O 6 HOH B 33 533 267 HOH HOH . O 6 HOH B 34 534 38 HOH HOH . O 6 HOH B 35 535 258 HOH HOH . O 6 HOH B 36 536 153 HOH HOH . O 6 HOH B 37 537 33 HOH HOH . O 6 HOH B 38 538 278 HOH HOH . O 6 HOH B 39 539 334 HOH HOH . O 6 HOH B 40 540 19 HOH HOH . O 6 HOH B 41 541 189 HOH HOH . O 6 HOH B 42 542 43 HOH HOH . O 6 HOH B 43 543 101 HOH HOH . O 6 HOH B 44 544 44 HOH HOH . O 6 HOH B 45 545 70 HOH HOH . O 6 HOH B 46 546 121 HOH HOH . O 6 HOH B 47 547 5 HOH HOH . O 6 HOH B 48 548 37 HOH HOH . O 6 HOH B 49 549 57 HOH HOH . O 6 HOH B 50 550 324 HOH HOH . O 6 HOH B 51 551 126 HOH HOH . O 6 HOH B 52 552 21 HOH HOH . O 6 HOH B 53 553 36 HOH HOH . O 6 HOH B 54 554 170 HOH HOH . O 6 HOH B 55 555 238 HOH HOH . O 6 HOH B 56 556 20 HOH HOH . O 6 HOH B 57 557 4 HOH HOH . O 6 HOH B 58 558 131 HOH HOH . O 6 HOH B 59 559 9 HOH HOH . O 6 HOH B 60 560 123 HOH HOH . O 6 HOH B 61 561 128 HOH HOH . O 6 HOH B 62 562 322 HOH HOH . O 6 HOH B 63 563 99 HOH HOH . O 6 HOH B 64 564 145 HOH HOH . O 6 HOH B 65 565 168 HOH HOH . O 6 HOH B 66 566 103 HOH HOH . O 6 HOH B 67 567 149 HOH HOH . O 6 HOH B 68 568 1 HOH HOH . O 6 HOH B 69 569 119 HOH HOH . O 6 HOH B 70 570 332 HOH HOH . O 6 HOH B 71 571 110 HOH HOH . O 6 HOH B 72 572 135 HOH HOH . O 6 HOH B 73 573 93 HOH HOH . O 6 HOH B 74 574 254 HOH HOH . O 6 HOH B 75 575 172 HOH HOH . O 6 HOH B 76 576 27 HOH HOH . O 6 HOH B 77 577 11 HOH HOH . O 6 HOH B 78 578 49 HOH HOH . O 6 HOH B 79 579 127 HOH HOH . O 6 HOH B 80 580 55 HOH HOH . O 6 HOH B 81 581 22 HOH HOH . O 6 HOH B 82 582 65 HOH HOH . O 6 HOH B 83 583 169 HOH HOH . O 6 HOH B 84 584 304 HOH HOH . O 6 HOH B 85 585 42 HOH HOH . O 6 HOH B 86 586 10 HOH HOH . O 6 HOH B 87 587 92 HOH HOH . O 6 HOH B 88 588 195 HOH HOH . O 6 HOH B 89 589 130 HOH HOH . O 6 HOH B 90 590 318 HOH HOH . O 6 HOH B 91 591 26 HOH HOH . O 6 HOH B 92 592 150 HOH HOH . O 6 HOH B 93 593 73 HOH HOH . O 6 HOH B 94 594 50 HOH HOH . O 6 HOH B 95 595 218 HOH HOH . O 6 HOH B 96 596 192 HOH HOH . O 6 HOH B 97 597 279 HOH HOH . O 6 HOH B 98 598 15 HOH HOH . O 6 HOH B 99 599 39 HOH HOH . O 6 HOH B 100 600 175 HOH HOH . O 6 HOH B 101 601 139 HOH HOH . O 6 HOH B 102 602 152 HOH HOH . O 6 HOH B 103 603 331 HOH HOH . O 6 HOH B 104 604 326 HOH HOH . O 6 HOH B 105 605 176 HOH HOH . O 6 HOH B 106 606 45 HOH HOH . O 6 HOH B 107 607 63 HOH HOH . O 6 HOH B 108 608 252 HOH HOH . O 6 HOH B 109 609 2 HOH HOH . O 6 HOH B 110 610 183 HOH HOH . O 6 HOH B 111 611 262 HOH HOH . O 6 HOH B 112 612 53 HOH HOH . O 6 HOH B 113 613 157 HOH HOH . O 6 HOH B 114 614 209 HOH HOH . O 6 HOH B 115 615 122 HOH HOH . O 6 HOH B 116 616 197 HOH HOH . O 6 HOH B 117 617 64 HOH HOH . O 6 HOH B 118 618 187 HOH HOH . O 6 HOH B 119 619 52 HOH HOH . O 6 HOH B 120 620 141 HOH HOH . O 6 HOH B 121 621 118 HOH HOH . O 6 HOH B 122 622 32 HOH HOH . O 6 HOH B 123 623 60 HOH HOH . O 6 HOH B 124 624 193 HOH HOH . O 6 HOH B 125 625 116 HOH HOH . O 6 HOH B 126 626 335 HOH HOH . O 6 HOH B 127 627 102 HOH HOH . O 6 HOH B 128 628 154 HOH HOH . O 6 HOH B 129 629 174 HOH HOH . O 6 HOH B 130 630 140 HOH HOH . O 6 HOH B 131 631 249 HOH HOH . O 6 HOH B 132 632 29 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.613 _atom_site.Cartn_y -1.881 _atom_site.Cartn_z 37.561 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #